BAC Information

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BAC

Clone NameB6Ng01-185P01
Chromosome14 (Build37)
Map Location 75,509,204 - 75,636,574
singlet/doubletdoublet
Overlap gene4921509B22Rik, LOC100043176, Lcp1
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik
Downstream geneCpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185P01.bB6Ng01-185P01.g
ACCGA010917GA010918
length9441,113
definitionB6Ng01-185P01.b B6Ng01-185P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,509,204 - 75,510,142)(75,635,465 - 75,636,574)
sequence
gaattcactgtagttcatcactggcctgtcaggtgtcacactccgattac
ttcactgcaatctcataataacttcatgtccatcagttttcacatgaaaa
cgtaaaactgaattgatctgatggttagtgtggaagtaccatcagaagaa
cattaaaacagtgtacctgagatatttgtccatctatgcatgtctcatac
acttttctattgaaatttcacagtgtaggtgtggtactttggttgaacct
actcctaaacatttcattatttttcttgtgatttttaaaagaaattgctt
caccaattttcttatcaagattgtatattgacagtatactaaaatgcagc
tgacttttttttggtattaattctatatactacaacatttctggaaatac
tcatatgctataaccatattattactggatttcttattgtatctatatca
cctgcaactggagatggctttcattcctccttttcttcaaacacagtttt
gcataatttcaacatcttaataaaactatgcagtcttttgttgggatgaa
acatttccatatctttatgggactaaatgaatccataactatattcaatc
tttttttaaaaaaatgttgaatcttggtagctattactgcttttccagtt
gccttggttagatggtctggtgcaaggttgaacagaagtggccaggatat
ccatccttgtctttttcctgatttgaggaggcaaacttccagtcttccat
catcaagtatactagctgtgagagttgtgttggaagttccttctattcct
aggtgttgagtggattcttttgggagggagtcatgaaaggaactaggatt
tcccagggatgattctgtgtatctattgagatagttgtgttttttcctcg
tctgaatcttaatcttacatcgaccttttctattgttgaagctg
gaattccagaacagctagtccttttcctctgctattttaggtggtaaact
cccatgcaaagagacagacaagcggattcagccaaacttgatcatgtgag
gcccatttcattcatggatcgggtcaccagctaatttggaatattaggtg
gcgaaaataacctaacaaggatttcatgaaacctcataacccctcttcaa
taaggcagaagtttctctaatgatttctgcttagagtttttcccaggttc
aagctctgggagaacaagggccaagccatggtcgcctccactagctcatt
tcagacatgcacttcagactcattgttagagaagcactgagagccaatta
atttggtgcctttttttttttttaattagagttcaggtgcagctcaattt
ccaagctttcttttcaaaattactcagccattaaagctgcataatcttgg
gtggctttgaagaacataattgatagatcttttcacgcttcacacgttct
ctctcatgtttattcatagaaaatgaatccgtgttataatttacaccaac
tcttaggctatctggctttctgtatttctaaaggggaggaaagaaggcac
actttaaaagacgtttaaaaagctaaaagcagacagctcaatcccgggtt
ccaatttccttgctttggtgcgcaaaactgagccagaaggttgcctggca
acccagacaggcacatgctcattggctagctggctagagcagtggagaga
gcaagcattcttgttgggacgtttttcatgagttcatattcactttgagt
gttctatttgcctgcggaggtgctccagccaggcctttcggagccatact
ccaggtacagaagagaagttctcaatgtccctgcgtactcagtcactttt
cgatatccacgttaaacccacctgtatctgaatgttggggcattgattac
agcatggactatatttctaaagctctcacggcggtttccaattgagcggc
tagcattgcttgggccagctgactggagtcagcagcccttctcaatgtgg
tgcatggaatcaccagctatacatctcttatggcaacttggaagaactgt
atggagtgtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75509204_75510142
seq2: B6Ng01-185P01.b_43_986

seq1  GAATTCACTGTAGTTCATCACTGGCCTGTCAGGTGTCACACTCCGATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAGTTCATCACTGGCCTGTCAGGTGTCACACTCCGATTAC  50

seq1  TTCACTGCAATCTCATAATAACTTCATGTCCATCAGTTTTCACATGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCAATCTCATAATAACTTCATGTCCATCAGTTTTCACATGAAAA  100

seq1  CGTAAAACTGAATTGATCTGATGGTTAGTGTGGAAGTACCATCAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAACTGAATTGATCTGATGGTTAGTGTGGAAGTACCATCAGAAGAA  150

seq1  CATTAAAACAGTGTACCTGAGATATTTGTCCATCTATGCATGTCTCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAACAGTGTACCTGAGATATTTGTCCATCTATGCATGTCTCATAC  200

seq1  ACTTTTCTATTGAAATTTCACAGTGTAGGTGTGGTACTTTGGTTGAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTATTGAAATTTCACAGTGTAGGTGTGGTACTTTGGTTGAACCT  250

seq1  ACTCCTAAACATTTCATTATTTTTCTTGTGATTTTTAAAAGAAATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAAACATTTCATTATTTTTCTTGTGATTTTTAAAAGAAATTGCTT  300

seq1  CACCAATTTTCTTATCAAGATTGTATATTGACAGTATACTAAAATGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTTTCTTATCAAGATTGTATATTGACAGTATACTAAAATGCAGC  350

seq1  TGACTTTTTTTTGGTATTAATTCTATATACTACAACATTTCTGGAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTTTTGGTATTAATTCTATATACTACAACATTTCTGGAAATAC  400

seq1  TCATATGCTATAACCATATTATTACTGGATTTCTTATTGTATCTATATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCTATAACCATATTATTACTGGATTTCTTATTGTATCTATATCA  450

seq1  CCTGCAACTGGAGATGGCTTTCATTCCTCCTTTTCTTCAAACACAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAACTGGAGATGGCTTTCATTCCTCCTTTTCTTCAAACACAGTTTT  500

seq1  GCATAATTTCAACATCTTAATAAAACTATGCAGTCTTTTGTTGGGATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTTCAACATCTTAATAAAACTATGCAGTCTTTTGTTGGGATGAA  550

seq1  ACATTTCCATATCTTTATGGGACTAAATGAATCCATAACTATATTCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCATATCTTTATGGGACTAAATGAATCCATAACTATATTCAATC  600

seq1  TTTTTTTAAAAAAATGTTGAATCTTGGTAGCTATTACTGCTTTTCCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAAATGTTGAATCTTGGTAGCTATTACTGCTTTTCCAGTT  650

seq1  GCCTTGGTTAGATGGTCTGGTGCAAGGTTGAACAGAAGTGGCCAGGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTTAGATGGTCTGGTGCAAGGTTGAACAGAAGTGGCCAGGATAT  700

seq1  CCATCCTTGTCTTTTTCCTGATTTGAGGAGGCAAACTTCCAGTCTTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTGTCTTTTTCCTGATTTGAGGAGGCAAACTTCCAGTCTTCCAT  750

seq1  CATCAAGTATACTAGCTGTGAGAGTTGTGTTGGAAGTTCCTTCTATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTATACTAGCTGTGAGAGTTGTGTTGGAAGTTCCTTCTATTCCT  800

seq1  AGGTGTTGAGTGGATTCTTTT-GGAGGGAGTCATGAAAGGAACTAGGATT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGTGTTGAGTGGATTCTTTTGGGAGGGAGTCATGAAAGGAACTAGGATT  850

seq1  TCCCAGGGATGA-TCTGTTGTATCTATTGAGATAGTTGTG-TTTTTCCTC  897
      |||||||||||| |||| |||||||||||||||||||||| |||||||||
seq2  TCCCAGGGATGATTCTG-TGTATCTATTGAGATAGTTGTGTTTTTTCCTC  899

seq1  GTCTGTATCTTAATCTTACATCGACC-TTTCTA-TGTTG-AGCTG  939
      ||||| |||||||||||||||||||| |||||| ||||| |||||
seq2  GTCTGAATCTTAATCTTACATCGACCTTTTCTATTGTTGAAGCTG  944

seq1: chr14_75635465_75636574
seq2: B6Ng01-185P01.g_65_1177 (reverse)

seq1  TCTGACACT-CACTCAGTTCCTCCAATTTGCCCCTAAGAGATTGTATAGC  49
      ||||||||| ||  |||||| ||||| ||| || ||||||| ||||||||
seq2  TCTGACACTCCATACAGTTCTTCCAAGTTG-CCATAAGAGA-TGTATAGC  48

seq1  TTGTGATT-CATGCACCACATTGGAGAGGGCTTGGCTGACTCAGGTCAGC  98
      | |||||| ||||||||||||||   ||||||  ||||||||  ||||||
seq2  TGGTGATTCCATGCACCACATTGAGAAGGGCT--GCTGACTCCAGTCAGC  96

seq1  T-GCCCAAGC-ATGCTAGCCGCTC-ATTGG-AACCGCCGTGAGAGCTTTA  144
      | |||||||| ||||||||||||| ||||| |||||||||||||||||||
seq2  TGGCCCAAGCAATGCTAGCCGCTCAATTGGAAACCGCCGTGAGAGCTTTA  146

seq1  GAAATATAGTCCATGCTTGTAATCATTGCCCCAACATTCAGATACA-GTT  193
      |||||||||||||||| |||||||| |||||||||||||||||||| || 
seq2  GAAATATAGTCCATGC-TGTAATCAATGCCCCAACATTCAGATACAGGTG  195

seq1  GGTTTAACGTGGATATCGAAAAGTGACTGAGTACGCAGGGACATTTGAGA  243
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTTTAACGTGGATATCGAAAAGTGACTGAGTACGCAGGGACA-TTGAGA  244

seq1  ACTTCTCTTCTGTACCTGGAGTATGGCTCCG-AAGGCCTGGCTGGAGCAC  292
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTCTCTTCTGTACCTGGAGTATGGCTCCGAAAGGCCTGGCTGGAGCAC  294

seq1  CTCCGCAGGCAAATAGAACACTCAAAGTGAATATGAACTCATG-AAAACG  341
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCCGCAGGCAAATAGAACACTCAAAGTGAATATGAACTCATGAAAAACG  344

seq1  TCCCAACAAGAATGCTTGCTCTCTCCACTGCTCTAGCCAGCTAGCCAATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAAGAATGCTTGCTCTCTCCACTGCTCTAGCCAGCTAGCCAATG  394

seq1  AGCATGTGCCTGTCTGGGTTGCCAGGCAACCTTCTGGCTCAGTTTTGCGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCCTGTCTGGGTTGCCAGGCAACCTTCTGGCTCAGTTTTGCGC  444

seq1  ACCAAAGCAAGGAAATTGGAACCCGGGATTGAGCTGTCTGCTTTTAGCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCAAGGAAATTGGAACCCGGGATTGAGCTGTCTGCTTTTAGCTT  494

seq1  TTTAAACGTCTTTTAAAGTGTGCCTTCTTTCCTCCCCTTTAGAAATACAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACGTCTTTTAAAGTGTGCCTTCTTTCCTCCCCTTTAGAAATACAG  544

seq1  AAAGCCAGATAGCCTAAGAGTTGGTGTAAATTATAACACGGATTCATTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGATAGCCTAAGAGTTGGTGTAAATTATAACACGGATTCATTTT  594

seq1  CTATGAATAAACATGAGAGAGAACGTGTGAAGCGTGAAAAGATCTATCAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATAAACATGAGAGAGAACGTGTGAAGCGTGAAAAGATCTATCAA  644

seq1  TTATGTTCTTCAAAGCCACCCAAGATTATGCAGCTTTAATGGCTGAGTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTTCAAAGCCACCCAAGATTATGCAGCTTTAATGGCTGAGTAA  694

seq1  TTTTGAAAAGAAAGCTTGGAAATTGAGCTGCACCTGAACTCTAATTAAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAGAAAGCTTGGAAATTGAGCTGCACCTGAACTCTAATTAAAA  744

seq1  AAAAAAAAAGGCACCAAATTAATTGGCTCTCAGTGCTTCTCTAACAATGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGGCACCAAATTAATTGGCTCTCAGTGCTTCTCTAACAATGA  794

seq1  GTCTGAAGTGCATGTCTGAAATGAGCTAGTGGAGGCGACCATGGCTTGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGTGCATGTCTGAAATGAGCTAGTGGAGGCGACCATGGCTTGGC  844

seq1  CCTTGTTCTCCCAGAGCTTGAACCTGGGAAAAACTCTAAGCAGAAATCAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTCCCAGAGCTTGAACCTGGGAAAAACTCTAAGCAGAAATCAT  894

seq1  TAGAGAAACTTCTGCCTTATTGAAGAGGGGTTATGAGGTTTCATGAAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACTTCTGCCTTATTGAAGAGGGGTTATGAGGTTTCATGAAATC  944

seq1  CTTGTTAGGTTATTTTCGCCACCTAATATTCCAAATTAGCTGGTGACCCG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGGTTATTTTCGCCACCTAATATTCCAAATTAGCTGGTGACCCG  994

seq1  ATCCATGAATGAAATGGGCCTCACATGATCAAGTTTGGCTGAATCCGCTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAATGAAATGGGCCTCACATGATCAAGTTTGGCTGAATCCGCTT  1044

seq1  GTCTGTCTCTTTGCATGGGAGTTTACCACCTAAAATAGCAGAGGAAAAGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTCTTTGCATGGGAGTTTACCACCTAAAATAGCAGAGGAAAAGG  1094

seq1  ACTAGCTGTTCTGGAATTC  1110
      |||||||||||||||||||
seq2  ACTAGCTGTTCTGGAATTC  1113