BAC Information

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BAC

Clone NameB6Ng01-186F23
Chromosome14 (Build37)
Map Location 85,390,065 - 85,391,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186F23.bB6Ng01-186F23.g
ACCGA011235GA011236
length1,1551,179
definitionB6Ng01-186F23.b B6Ng01-186F23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaattctgctttccatatttctgcattatgttcaatatagcata
ttttcaccataaaacaagaacacacagttgccactctggtattcttgatt
gtgtattttctttgtgcataaatttgatgatgccagacatttgtgattaa
gcttgttgatgatgtcagataatcaaatttagatgtatattatttgattt
gtatcacatccatttcattaattcatgtttagttaagatattccatttga
atccttttaaataagcaaatttgtagacctatcagtcatacttcaagagt
tgagatcacccatttccaaaacatatcttgagctattaccaaatattgga
aatatatatagaaatatttagttccactaatcttgacttgggacagggat
aaaaaaaataaatcagtgatttctagtgttccattttctaatttctttgt
cgtaagtaaatgcattcagtcacttaaaatataaatttttcttcctagaa
gtattcacagcagcttgtcttagatcatctctactttccttcttcaaaac
aactctattgttccctgaagcaaatgtgtttttatcaacttagtggtatt
tggtaaacacataatatttttgtgctagcactgtgaattaaggaattctg
agcagtatgaacgaatctaagtgctcatcacagagacgtgatgcttgaag
gtactgtcagaaaaaaaaatgaagcaatatttcttggaagaaaattacta
tagttaagaattaactattaatgacaaatcgacagacaagaaaatgtctt
gaacactcaagcactgttgtctttggtactttgaaaatggatcagctttt
aagattcaacagattcaaggatgatggtaattcatatctctgtaaaactt
caacctgaatttacaacattttgagattttaaaatgtagaaagctatagt
tccataatcatgttttctctcaaggactgcttttagcatttgattagttc
cgatgatacatatctctgaagtctttgtaaagtcagactttgagaacagc
aaatagagtataatgggtgatggtaatttatcagcctacttcttgtttta
ttgtcaagtggtctcaattccattcatctacgtactgaatcataggcata
caggt

gaattcctaaacctgataaacagctttggtgaattagctggatataaaat
taactcaaacaagtcaatggcctttctctacacaaagaataaacaggctg
agaaagaaattagagaaacaaacccttctcaatagtcacaaataatataa
gatatcttggcgtgactctaaggaagtgaaagatctatataataaaaact
tcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagat
ctcccatgctcatggattggcaggatcaacattgtaaaaatggctatctt
gacaaaagtaatctacagattcaatgcagtccccatcaaaattccaactc
aattcttcaacgaattagaaagagcaatctgcaaattcatctggaataac
aaaaaaactaggataacaaaaactcttctcaaggataaaagaacctctcg
tggaatgaatcaccatgcctgacctaaagctttactacagagcaattgtg
ataaaaactgcatggtactggaatactgacagacaagtagaccaatggaa
cagaattgaagaaccagagatgaacccacagacctatggtcacttgatct
ttgacaagggagctaaaaccatccagtggaagaaagacagcattttcaac
aaattgtgctggcacaactggttgttatcatgtagaagaatgggaatcga
tccattcctatctccttgtactaaggtcaaatctaagtggatcaaggaaa
ttcacatgaaaccagagacactgaaacttatagaggagaaagtggggaaa
agccttgaagatatgggcacagggaaaaaattcctgaatagaacaacaat
ggcttgtgctgcaagatctagatttgacaaatggaacctcatgaaactgc
aaagcttctgcaaggcaaaagacactgtcaataagacaaaagaccaccaa
cagattgggaaaggatatttacctatcctaaatcagatagggactaatat
ccatatatataaagaactcaagaagtggactccagaaaatcataccccat
taaaaaatgggctcagactgaacaaagattctcacctgagaataccgatt
agccagagaagcacctgaaaatgtcacatctatcatcaggaaatgaaaaa
tcaaaacaaaccctcgtaggagattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85390065_85391228
seq2: B6Ng01-186F23.b_45_1199 (reverse)

seq1  ACCTGTATGCTAATGATCTCCAGTTATGTAGATG-ATAGAA-TGAGACCA  48
      ||||||||||  ||||  | ||| || ||||||| || ||| ||||||||
seq2  ACCTGTATGCCTATGA--TTCAG-TACGTAGATGAATGGAATTGAGACCA  47

seq1  CTTTTGACAAACAAAAAACAGAAGTA-GCTGATAAA-TACCATCACCCAT  96
      |  |||||||   ||||  ||||||| ||||||||| |||||||||||||
seq2  C--TTGACAA--TAAAACAAGAAGTAGGCTGATAAATTACCATCACCCAT  93

seq1  TATACTCTATTTGCTGTTCTCAAAGTCTGACCTTTTACAAAGACTTTCAG  146
      |||||||||||||||||||||||||||||||  ||||||||||| |||||
seq2  TATACTCTATTTGCTGTTCTCAAAGTCTGAC--TTTACAAAGAC-TTCAG  140

seq1  AGATATGTTATCATCGGGAACCTAATCAAATGCTAAAAGCAGTCCTTGAG  196
      ||||||| |||||||||  | |||||||||||||||||||||||||||||
seq2  AGATATG-TATCATCGG--AACTAATCAAATGCTAAAAGCAGTCCTTGAG  187

seq1  AGAAAACATGATTATGGAACTATAGCTTTCTACATTTTAAAATCTCAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATGATTATGGAACTATAGCTTTCTACATTTTAAAATCTCAAAA  237

seq1  TGTTGTAAATTCAGGTTGAAGTTTTACAGAGATATGAATTACCATCATCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAATTCAGGTTGAAGTTTTACAGAGATATGAATTACCATCATCC  287

seq1  TTGAATCTGTTGAATCTTAAAAGCTGATCCATTTTCAAAGTACCAAAGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGTTGAATCTTAAAAGCTGATCCATTTTCAAAGTACCAAAGAC  337

seq1  AACAGTGCTTGAGTGTTCAAGACATTTTCTTGTCTGTCGATTTGTCATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCTTGAGTGTTCAAGACATTTTCTTGTCTGTCGATTTGTCATTA  387

seq1  ATAGTTAATTCTTAACTATAGTAATTTTCTTCCAAGAAATATTGCTTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATTCTTAACTATAGTAATTTTCTTCCAAGAAATATTGCTTCAT  437

seq1  TTTTTTTTCTGACAGTACCTTCAAGCATCACGTCTCTGTGATGAGCACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTGACAGTACCTTCAAGCATCACGTCTCTGTGATGAGCACTT  487

seq1  AGATTCGTTCATACTGCTCAGAATTCCTTAATTCACAGTGCTAGCACAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCGTTCATACTGCTCAGAATTCCTTAATTCACAGTGCTAGCACAAA  537

seq1  AATATTATGTGTTTACCAAATACCACTAAGTTGATAAAAACACATTTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATGTGTTTACCAAATACCACTAAGTTGATAAAAACACATTTGCT  587

seq1  TCAGGGAACAATAGAGTTGTTTTGAAGAAGGAAAGTAGAGATGATCTAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAACAATAGAGTTGTTTTGAAGAAGGAAAGTAGAGATGATCTAAG  637

seq1  ACAAGCTGCTGTGAATACTTCTAGGAAGAAAAATTTATATTTTAAGTGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGCTGTGAATACTTCTAGGAAGAAAAATTTATATTTTAAGTGAC  687

seq1  TGAATGCATTTACTTACGACAAAGAAATTAGAAAATGGAACACTAGAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCATTTACTTACGACAAAGAAATTAGAAAATGGAACACTAGAAAT  737

seq1  CACTGATTTATTTTTTTTATCCCTGTCCCAAGTCAAGATTAGTGGAACTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTATTTTTTTTATCCCTGTCCCAAGTCAAGATTAGTGGAACTA  787

seq1  AATATTTCTATATATATTTCCAATATTTGGTAATAGCTCAAGATATGTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTATATATATTTCCAATATTTGGTAATAGCTCAAGATATGTTT  837

seq1  TGGAAATGGGTGATCTCAACTCTTGAAGTATGACTGATAGGTCTACAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGGGTGATCTCAACTCTTGAAGTATGACTGATAGGTCTACAAAT  887

seq1  TTGCTTATTTAAAAGGATTCAAATGGAATATCTTAACTAAACATGAATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTTAAAAGGATTCAAATGGAATATCTTAACTAAACATGAATTA  937

seq1  ATGAAATGGATGTGATACAAATCAAATAATATACATCTAAATTTGATTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGGATGTGATACAAATCAAATAATATACATCTAAATTTGATTAT  987

seq1  CTGACATCATCAACAAGCTTAATCACAAATGTCTGGCATCATCAAATTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCATCAACAAGCTTAATCACAAATGTCTGGCATCATCAAATTTA  1037

seq1  TGCACAAAGAAAATACACAATCAAGAATACCAGAGTGGCAACTGTGTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAAGAAAATACACAATCAAGAATACCAGAGTGGCAACTGTGTGTT  1087

seq1  CTTGTTTTATGGTGAAAATATGCTATATTGAACATAATGCAGAAATATGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTATGGTGAAAATATGCTATATTGAACATAATGCAGAAATATGG  1137

seq1  AAAGCAGAATTGGAATTC  1164
      ||||||||||||||||||
seq2  AAAGCAGAATTGGAATTC  1155


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