BAC Information

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BAC

Clone NameB6Ng01-187G20
Chromosome1 (Build37)14 (Build37)
Map Location 142,610,496 - 142,611,03143,916,526 - 43,917,620
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187G20.bB6Ng01-187G20.g
ACCGA012011GA012012
length1,0421,087
definitionB6Ng01-187G20.b B6Ng01-187G20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,610,496 - 142,611,031)(43,916,526 - 43,917,620)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaatggc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagattttgaagttttatcaat
atagatctttcacctccttagttagagtcacgcccaagatattttaatat
tatttgtgactattgagaagggtgttgtttccctaatttcttctcagctg
tttatcttgtatagagaaaagccattgacttggttgagttta

gaattcacatgatccttggggcctgtgtcatggagtagcttcagtgactg
gaagaatgtgttcgatttatttcctatactcaaagcaggcagaaaaggat
gaaagtcctccatgtaatatcaaatatatccagaagagggtgctagatcc
tcagtacccaaagtatccagaagatgggataagacagattgccatccagt
accaaagtcatccagagagcatcttaagatcaaagtcagctggtgttgta
gccctagcagcaaggaggaggaggctgcatcctgatgccctcttctgaca
gtcagaatgaaattaaggaactcttgcacagcagctgcagccttgccaag
tcctgctctctgtcaaacaaactgcttcccagaagctccaagctcctgat
tcccattactggaagtccaagctcaagcctaccttctctaggaagctccc
tctttcatgcccaggattcacagtgacttccccaggaccattaattcttg
ctctttaacactaagaccaaaggccatcttgtggctgcctctttctggtc
tctgtatgttcattgttctctcctccaagaggcctgctcagttttgtcaa
catgtctaagggtgaaccataaaggtagttaatgaatgctccaagagcag
ttggagtcaccataacattagtaacatcacagaaaatgccagggctctcc
agattacaacacaacatctaaggaagggacttctgatgtcacacaggtca
gctcgtaccattatgctcagtacctcacccaaatttacctgaagtcaaag
tgccttttccagagagtgggatagattgccttttggtactcaaaatatta
aaaggtggctatcaatcaccttccaatgacaaatgtatccagaagagatc
ctttgaatccccatgcaaatatacatgaaatacccagcctccagaataag
acactaggcaatactcacacatctagagaagtgtgataagatccccttgc
agtactgaaactatcagagaggtcataccgtccaggcagttctatgttgt
gattactgactggaacagattgaaatgtcactagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142610496_142611031
seq2: B6Ng01-187G20.b_553_1087 (reverse)

seq1  TAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCT  50
      ||||||||| |||||||||||| |||||||||||||   ||||||| |||
seq2  TAAACTCAACCAAGTCAATGGCTTTTCTCTATACAA--GATAAACA-GCT  47

seq1  GAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATA-  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAG-AAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATAT  96

seq1  TAAAATATCTT-GGCGTGACTCTAACTAAGGAGGTGAAAGATCTGTA-TG  147
      ||||||||||| |||||||||||||||||||||||||||||||| || ||
seq2  TAAAATATCTTGGGCGTGACTCTAACTAAGGAGGTGAAAGATCTATATTG  146

seq1  ATAAAAACTTC-AAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAG  196
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AT-AAAACTTCAAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAG  195

seq1  ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAA  245

seq1  TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA  295

seq1  ATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGT  345

seq1  CTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAA  395

seq1  GAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCC  445

seq1  ATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCA  495

seq1  ATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACC  536
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACC  535


seq1: chr14_43916526_43917620
seq2: B6Ng01-187G20.g_66_1152

seq1  GAATTCACATGATCCTTGAGGCCTGTGTCATGGAGTAGCTTCAGTGACTA  50
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GAATTCACATGATCCTTGGGGCCTGTGTCATGGAGTAGCTTCAGTGACTG  50

seq1  GAAGAATGGGTTAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTGTTCGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100

seq1  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150

seq1  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200

seq1  ACCAAAGACATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTTGTA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTTGTA  250

seq1  GCCCTAGGAGCAAGGAGGAGGAATCTGCCTCCTGATGCCCTCTTCTGACA  300
      ||||||| ||||||||||||||  |||| |||||||||||||||||||||
seq2  GCCCTAGCAGCAAGGAGGAGGAGGCTGCATCCTGATGCCCTCTTCTGACA  300

seq1  GTCAGAATGAAATTGAGGAACTCTTGCACAGCAGCTGCAGCCTTGCCAAG  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGAAATTAAGGAACTCTTGCACAGCAGCTGCAGCCTTGCCAAG  350

seq1  TCCTGCTCTCTGTCAAACAAACTGCTTCCCAGAAGCTCCAAGCTCCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTCTGTCAAACAAACTGCTTCCCAGAAGCTCCAAGCTCCTGAT  400

seq1  TCCTATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTCTAGGAAGCTCCC  450
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCCATTACTGGAAGTCCAAGCTCAAGCCTACCTTCTCTAGGAAGCTCCC  450

seq1  TCTTTCATGCCCAGGAATCACAGTGACTTCCCCTGGGCCATTAATTCTTG  500
      |||||||||||||||| |||||||||||||||| || |||||||||||||
seq2  TCTTTCATGCCCAGGATTCACAGTGACTTCCCCAGGACCATTAATTCTTG  500

seq1  CTCTTTAACACTAAGACCAAAGGCCATCTTGTGGCTGCCTCTTTCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAACACTAAGACCAAAGGCCATCTTGTGGCTGCCTCTTTCTGGTC  550

seq1  TCTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAA  600

seq1  CATGTCTAAGGGTGAACCATAAAGGTAGTTAATGAATGCTCCAAGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAAGGGTGAACCATAAAGGTAGTTAATGAATGCTCCAAGAGCAG  650

seq1  TTGGAGTCACCATAACATTAGTAACATCACAGAAAATGCCAGGGCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCACCATAACATTAGTAACATCACAGAAAATGCCAGGGCTCTCC  700

seq1  AGATTACAACACAACATCTAAGGAAGGGACTTCTGATGTCACACAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACAACACAACATCTAAGGAAGGGACTTCTGATGTCACACAGGTCA  750

seq1  GCTTGTACCATTATGCTCAGTACCTCACCCAAATTTACCTGAAGTCAAAG  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTACCATTATGCTCAGTACCTCACCCAAATTTACCTGAAGTCAAAG  800

seq1  TGCCTTTTCCAGAGAGTGGGATAGATTGCCTTTTGGTACTCAAAATATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTCCAGAGAGTGGGATAGATTGCCTTTTGGTACTCAAAATATTA  850

seq1  AAAGGTGGCTATCAATCACCTTCCAATGACAAATGTATCCAGAAGAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGCTATCAATCACCTTCCAATGACAAATGTATCCAGAAGAGATC  900

seq1  CTTTGAATCCCCATGCAAATATACATGAAATACCCAGCCTCCAGAATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATCCCCATGCAAATATACATGAAATACCCAGCCTCCAGAATAAG  950

seq1  ACACTAGGCAATACTCAACACATCTAGATAAAGTGTGAT-AGATCCCCTT  999
      |||||||||||||||| |||||||||||  ||||||||| ||||||||||
seq2  ACACTAGGCAATACTC-ACACATCTAGA-GAAGTGTGATAAGATCCCCTT  998

seq1  GCAGTACTGAAACTATCCAGAAGAGGTCAATACCCGTCCAGCCAGTTTCT  1049
      |||||||||||||||| ||| ||||||| ||| |||||||| ||| ||||
seq2  GCAGTACTGAAACTAT-CAG-AGAGGTC-ATA-CCGTCCAGGCAG-TTCT  1043

seq1  ATGTTGTGATTACTGACCTGGACAGAATGGAAAATGTCACTAGTAA  1095
      |||||||||||||||||  | ||||| ||  |||||||||||||||
seq2  ATGTTGTGATTACTGACTGGAACAGATTG--AAATGTCACTAGTAA  1087


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