BAC Information

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BAC

Clone NameB6Ng01-187M11
Chromosome14 (Build37)
Map Location 99,892,924 - 100,031,859
singlet/doubletdoublet
Overlap geneLOC668672
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187M11.bB6Ng01-187M11.g
ACCGA012264GA012265
length1,0661,169
definitionB6Ng01-187M11.b B6Ng01-187M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,892,924 - 99,893,990)(100,030,669 - 100,031,859)
sequence
gaattctacctcctaagctccatccacagcagtgccgtacattttgcatt
gagggtttcaaaaacggaagttgttcaagagcagtgctcgtcccgagcac
ccagtgaactcagtaagtgggttttgagctttattatatttgtctgccaa
gtctgctaaagaagtagcttaccatactgttcccgagggtgcttatggcc
ttgggatttttatacctttggtctttggctgcaatattccctacataata
aactgagattaaagttgtttcgtgtcatgagatgaataatatttaacaca
aggattcaaggtatctacctgttaacctttgaccaaatcactgggacaat
ttgattttttttttttaattagaatttcatcctgctttgatgtgagttga
ttccctgcctcaaacagaagggaggtttggaatatgtgctcaggcatgag
tgaccatcataatttaccaagaacaaaacttgagctgtgtctgacagcac
tagcctgtgatcccagctcctgatgaggctgaggaaacagaatgggttta
agcctaggtagggttacagagagagttcaagaccaatgtaggcaccttag
taagacacacattctcttaaattaaagatacaaaatggattttcagtaag
aaaagaaccgacataagaaataccctcctgaaaagatgatgattaaatat
ttgttcatatttaaagttcagatttgctgtctctcaatcatttacacaat
ccatatccctttgaggtccaatcccacgtaacatcactattttgtaaaac
tacaattaaatggcttattgcatggatcattagttaggaaaacattttct
atttcagccaatcctccataatctatatttttcaggtcttaaaatgtcaa
cttggaatggtcaagcagaaccaccataaaattcgaagacagtcagtaga
atctccacggttactggagttttttaaattagttctttaacaacaatctg
ggggcaataagtgaatatggcttctgcttagctacttaataaggattttc
cgagggatcacatata

ctgctttcccagttactcagcaaggcttaggggaagaggtgaaaagagag
aagaaaaggtttccattggctaacaataggtggcgtttccaggaatgggg
cttaaggatcaaagagaaaaggaattgattaactcatttagagaaggcaa
gaaattaggaagaaagcagaaaacacctgggctccccttgaagacagggg
cttgcgcaatctctccgaaacttatctgtcacttactcatccaccagcca
gagaacttctaaataaatattcaaggagcaactacttgctaggcaacagt
ttggagatgagaggcaaccacagcatgccgggtgattctgaaaggataga
tttacttcatgaaagaacccttagctcactctccaaaaccaaaagggatt
gggcaaaacagctatttgtcgcacccatctctaaatgaactgattctgag
tgataaaattcattttgcactctgcagtttggcagaagtcaccaaacatg
gaaccttgcccatcaccaatgttcaaaacatctgacaactccgagggcct
ggctattacctatgcatatttttgtgcgtattcacttgtccacaggactg
catagatcatcacagcacaagggtgcatagatgcacgtgtgcacacgtgc
gcgctaatacacacacacacacacacacacactcatacactcacacattc
gcacgtgcacgctcactcccacagacaggtacatgtctgggggtggcatt
aggcactgggaaatgtggatacacacaaattatctttggaaattaatatg
ggatttaaatcatacctacgggtcaatattcaacagttgcaacaagtatt
tgacccgttgtccatgataaaataacatcaagatactaatatattctcct
ttagggattatattttcgttctatttctatccatggctgatttccgttta
tatctatgaatgaggaaatgtctggtgtttgaatgtgacacatgttgcca
tgatctaaaaaaaaccaaaaaacaacaacaacacaacacacaaccaactc
agcatcaaattgtttctggtaactgcagcacctccccttctggtgttctt
ggagtcctggaatccgaatgcattagtcatgtctgagaggctgaccctca
attttatttataaatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99892924_99893990
seq2: B6Ng01-187M11.b_48_1113

seq1  GAATTCTACCTCCTAAGCTCCATCCACAGCAGTGCCGTACATTTTGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTCCTAAGCTCCATCCACAGCAGTGCCGTACATTTTGCATT  50

seq1  GAGGGTTTCAAAAACGGAAGTTGTTCAAGAGCAGTGCTCGTCCCGAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTCAAAAACGGAAGTTGTTCAAGAGCAGTGCTCGTCCCGAGCAC  100

seq1  CCAGTGAACTCAGTAAGTGGGTTTTGAGCTTTATTATATTTGTCTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAACTCAGTAAGTGGGTTTTGAGCTTTATTATATTTGTCTGCCAA  150

seq1  GTCTGCTAAAGAAGTAGCTTACCATACTGTTCCCGAGGGTGCTTATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTAAAGAAGTAGCTTACCATACTGTTCCCGAGGGTGCTTATGGCC  200

seq1  TTGGGATTTTTATACCTTTGGTCTTTGGCTGCAATATTCCCTACATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTTTATACCTTTGGTCTTTGGCTGCAATATTCCCTACATAATA  250

seq1  AACTGAGATTAAAGTTGTTTCGTGTCATGAGATGAATAATATTTAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATTAAAGTTGTTTCGTGTCATGAGATGAATAATATTTAACACA  300

seq1  AGGATTCAAGGTATCTACCTGTTAACCTTTGACCAAATCACTGGGACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCAAGGTATCTACCTGTTAACCTTTGACCAAATCACTGGGACAAT  350

seq1  TTGATTTTTTTTTTTTAATTAGAATTTCATCCTGCTTTGATGTGAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTTTTTTAATTAGAATTTCATCCTGCTTTGATGTGAGTTGA  400

seq1  TTCCCTGCCTCAAACAGAAGGGAGGTTTGGAATATGTGCTCAGGCATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCCTCAAACAGAAGGGAGGTTTGGAATATGTGCTCAGGCATGAG  450

seq1  TGACCATCATAATTTACCAAGAACAAAACTTGAGCTGTGTCTGACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCATAATTTACCAAGAACAAAACTTGAGCTGTGTCTGACAGCAC  500

seq1  TAGCCTGTGATCCCAGCTCCTGATGAGGCTGAGGAAACAGAATGGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTGATCCCAGCTCCTGATGAGGCTGAGGAAACAGAATGGGTTTA  550

seq1  AGCCTAGGTAGGGTTACAGAGAGAGTTCAAGACCAATGTAGGCACCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGTAGGGTTACAGAGAGAGTTCAAGACCAATGTAGGCACCTTAG  600

seq1  TAAGACACACATTCTCTTAAATTAAAGATACAAAATGGATTTTCAGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACACATTCTCTTAAATTAAAGATACAAAATGGATTTTCAGTAAG  650

seq1  AAAAGAACCGACATAAGAAATACCCTCCTGAAAAGATGATGATTAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCGACATAAGAAATACCCTCCTGAAAAGATGATGATTAAATAT  700

seq1  TTGTTCATATTTAAAGTTCAGATTTGCTGTCTCTCAATCATTTACACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATATTTAAAGTTCAGATTTGCTGTCTCTCAATCATTTACACAAT  750

seq1  CCATATCCCTTTGAGGTCCAATCCCACGTAACATCACTATTTTGTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCCTTTGAGGTCCAATCCCACGTAACATCACTATTTTGTAAAAC  800

seq1  TACAATTAAATGGCTTATTGCATGGATCATTAGTTAGGAAAACATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAATGGCTTATTGCATGGATCATTAGTTAGGAAAACATTTTCT  850

seq1  ATTTCAGCCAATCCTCCATAATCTATATTTTTCAGGTCTTAAAATGTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCCAATCCTCCATAATCTATATTTTTCAGGTCTTAAAATGTCAA  900

seq1  CTTGGAATGGTCAAGCAGAACCACCATAAAATTCGAAGACAGTCAAGTAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGGAATGGTCAAGCAGAACCACCATAAAATTCGAAGACAGTC-AGTAG  949

seq1  AATCTCCACGGTTACTGGAGTTTTTTAAATTAGTTCTTTTTAACAACAAT  1000
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  AATCTCCACGGTTACTGGAGTTTTTTAAATTAGTTC--TTTAACAACAAT  997

seq1  CTGGGGGCAATAAGTGAATATGGCTTTCTGCTTAGCTACTTAATAA-GAT  1049
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  CTGGGGGCAATAAGTGAATATGGC-TTCTGCTTAGCTACTTAATAAGGAT  1046

seq1  TTTCAGA-GGATCA-ATATA  1067
      |||| || |||||| |||||
seq2  TTTCCGAGGGATCACATATA  1066


seq1: chr14_100030669_100031859
seq2: B6Ng01-187M11.g_69_1237 (reverse)

seq1  AGAAATT----AATAAAA-TGAGGTTCAGCCTCAAGGAACATGACTAATG  45
      |||||||    ||||||| ||||| ||||||||   | ||||||||||||
seq2  AGAAATTTATAAATAAAATTGAGGGTCAGCCTCTCAG-ACATGACTAATG  49

seq1  CATCTGAAATCAGAGACTCAAAG-ACACCAGAAAGGGGAGGTGCTTGCAG  94
      |||  | | ||   ||||| ||| ||||||| |||||||||||| |||||
seq2  CATTCGGATTCCAGGACTCCAAGAACACCAG-AAGGGGAGGTGC-TGCAG  97

seq1  TTTTACCAGGAAACAATTTTGAATTGCTTGAGTTTTGTTGT-TGTTGTTG  143
        |||||| ||||||| |||||  ||| |||| || ||||| ||||| ||
seq2  --TTACCA-GAAACAA-TTTGA--TGC-TGAG-TTGGTTGTGTGTTG-TG  138

seq1  TTGTTTTTGTTTGTTTGTTTTTTTGGTTTTTTTTTAGAATCATGGCAACA  193
      ||||| |||         |||||||| |||||||||| ||||||||||||
seq2  TTGTTGTTG---------TTTTTTGG-TTTTTTTTAG-ATCATGGCAACA  177

seq1  TTGTGTTCACATTTCAAACACCAGAACATTTCCTCATTTCATAGATATAA  243
       |||| ||||| |||||||||||| ||||||||||| |||||||||||||
seq2  -TGTG-TCACA-TTCAAACACCAG-ACATTTCCTCA-TTCATAGATATAA  222

seq1  ACGGAAATCAGCCATTGGATAGAAATAGAACGAAAATATAATCCCTAAAG  293
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACGGAAATCAGCCA-TGGATAGAAATAGAACGAAAATATAATCCCTAAAG  271

seq1  GAGAATATATTAGTATCTTGATGTTATTTTATCATGGACAACGGGTCAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATATTAGTATCTTGATGTTATTTTATCATGGACAACGGGTCAAA  321

seq1  TACTTGTTGCAACTGTTGAATATTGACCCGTAGGTATGATTTAAATCCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTGCAACTGTTGAATATTGACCCGTAGGTATGATTTAAATCCCA  371

seq1  TATTAATTTCCAAAGATAATTTGTGTGTATCCACATTTCCCAGTGCCTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCCAAAGATAATTTGTGTGTATCCACATTTCCCAGTGCCTAA  421

seq1  TGCCACCCCCAGACATGTACCTGTCTGTGGGAGTGAGCGTGCACGTGCGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCCCAGACATGTACCTGTCTGTGGGAGTGAGCGTGCACGTGCGA  471

seq1  ATGTGTGAGTGTATGAGTGTGTGTGTGTGTGTGTGTGTGTATTAGCGCGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAGTGTATGAGTGTGTGTGTGTGTGTGTGTGTGTATTAGCGCGC  521

seq1  ACGTGTGCACACGTGCATCTATGCACCCTTGTGCTGTGATGATCTATGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGCACACGTGCATCTATGCACCCTTGTGCTGTGATGATCTATGCA  571

seq1  GTCCTGTGGACAAGTGAATACGCACAAAAATATGCATAGGTAATAGCCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGGACAAGTGAATACGCACAAAAATATGCATAGGTAATAGCCAG  621

seq1  GCCCTCGGAGTTGTCAGATGTTTTGAACATTGGTGATGGGCAAGGTTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGGAGTTGTCAGATGTTTTGAACATTGGTGATGGGCAAGGTTCCA  671

seq1  TGTTTGGTGACTTCTGCCAAACTGCAGAGTGCAAAATGAATTTTATCACT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGACTTCTGCCAAACTGCAGAGTGCAAAATGAATTTTATCACT  721

seq1  CAGAATCAGTTCATTTAGAGATGGGTGCGACAAATAGCTGTTTTGCCCAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGTTCATTTAGAGATGGGTGCGACAAATAGCTGTTTTGCCCAA  771

seq1  TCCCTTTTGGTTTTGGAGAGTGAGCTAAGGGTTCTTTCATGAAGTAAATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTGGTTTTGGAGAGTGAGCTAAGGGTTCTTTCATGAAGTAAATC  821

seq1  TATCCTTTCAGAATCACCCGGCATGCTGTGGTTGCCTCTCATCTCCAAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTCAGAATCACCCGGCATGCTGTGGTTGCCTCTCATCTCCAAAC  871

seq1  TGTTGCCTAGCAAGTAGTTGCTCCTTGAATATTTATTTAGAAGTTCTCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTAGCAAGTAGTTGCTCCTTGAATATTTATTTAGAAGTTCTCTG  921

seq1  GCTGGTGGATGAGTAAGTGACAGATAAGTTTCGGAGAGATTGCGCAAGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGATGAGTAAGTGACAGATAAGTTTCGGAGAGATTGCGCAAGCC  971

seq1  CCTGTCTTCAAGGGGAGCCCAGGTGTTTTCTGCTTTCTTCCTAATTTCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCAAGGGGAGCCCAGGTGTTTTCTGCTTTCTTCCTAATTTCTT  1021

seq1  GCCTTCTCTAAATGAGTTAATCAATTCCTTTTCTCTTTGATCCTTAAGCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTAAATGAGTTAATCAATTCCTTTTCTCTTTGATCCTTAAGCC  1071

seq1  CCATTCCTGGAAACGCCACCTATTGTTAGCCAATGGAAACCTTTTCTTCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTGGAAACGCCACCTATTGTTAGCCAATGGAAACCTTTTCTTCT  1121

seq1  CTCTTTTCACCTCTTCCCCTAAGCCTTGCTGAGTAACTGGGAAAGCAG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCACCTCTTCCCCTAAGCCTTGCTGAGTAACTGGGAAAGCAG  1169


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