BAC Information

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BAC

Clone NameB6Ng01-188E16
Chromosome14 (Build37)
Map Location 51,594,449 - 51,686,120
singlet/doubletdoublet
Overlap geneLOC667210, Rnase10, Rnase9, Rnase11, Rnase12
Upstream geneLOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034
Downstream geneOlfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E16.bB6Ng01-188E16.g
ACCGA012628GA012629
length1,1501,088
definitionB6Ng01-188E16.b B6Ng01-188E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,594,449 - 51,595,583)(51,685,034 - 51,686,120)
sequence
gaattccagaagactgccctggccatggcaataaaatgtgttttaatagg
ttcaatggcatctttggaaaaatagccccatgcctattatattattgtgt
gtgctctatttcattctggggttaaatgaagtgagagatgggaggcttgt
gaagtaaaaacttgcctgtatatattctgttttctttttctttctaagac
tgttgtacgtctaaggttcagatacttgaatgcttggatcccggttgttg
gagtatttaggaaggattaggatgtgtggcctgctggaggtggtgtgtca
ctgagggtgggctttgaggttttacaagtccttgacagctccaggttcac
tttctctctgttttcatcttgcagatcagatataagtgctcagctactgc
gcgccagcgctgtgcttgcctacctgctgctgtccctgcctgcagctgtc
cctacctgcttctatccctaactgttgctgtccttatctgctgcagtccc
tacccgctgttgtttcctccctgctgctgtccctgcctgctgctatgctc
tccactattaaagtcatggattaaccctttgaagctgtaagcaatggcaa
cctgaactaagacaaggacccaagttcaatctctgcacctcatggtagaa
ggaaagaaacaactggagaaagttttcctctgatctcatatgttccatga
cacacacacacacacctgcaatcataaaatgtacacaggacaacaacaac
aacaataataaatttacaaaagaattccaacacaatgaacatttattaag
gcctttgctctttttccagctttaaacccacatttttctaagaatattac
cctgaatactattcttcataaaagtcacttccaaatcatttatacatctc
cagtggtttcctggctttgctttaatcagattattatttcaattagtgac
ccctctggagccacttcattaaaagaagtaagggaatagaagaagtgacg
gcttactgattaagggattattggtggtgggtgcagtgcaagccttttaa
ttccagcaatcaggaaggcacaaggcagtgggatcctctggatttcagcc
caggcttgacttatagagcaagttccaaggacagccaggctacacagaga

gaattctcttaaatgtgtaatggaaaaccataaaggaagataaatcagtc
cctgcagagaatggaagagagcccaccaaactgtggccaggtggggatga
gtagtattgcggggaaacagaaaggagccaaggaccagaggatgatggga
gagaagaaagagcaagaagggaaggagggagggcagttttgattgaggct
gattttgtctaaacccactctctgaaaattatagcagtaaagatgacaaa
aaaaaaaaaaccctataataatgggcacttatttctgaaaaagtacacta
catagctaaccaaatgatatagtaatttacagtcttaaagaacgaacctt
gtgactttcttgggggtgtagtggccagggccacctagaaagtctgagga
ccggtggccgggcagtgctgggagacgcgggtctaagcaagccaacaaag
accccgcttgcccggctctgtgcacaggacagcttggtgagacctctgta
gactcaaacccggatcaagaacatctgccgtagaaggcttattttcctaa
ttatcggagctcatccatttccttcaaaatgttttgaggccagcagcatc
atgtgtacatttatataagacaggatgtaatgaatgtattttaggtagtg
gatagctgaagtttttcttaagaaaacacacgtctttgtttttgtttacc
aggttatagaaacaaggatttgaaaaagtttaaagacgcaaatttgatct
attttttaatagcaaagatgtgttggggtgtgtccttagggaagggttag
atctgttctggtatgaaccgtttgcttcttcgcttgagcctttgagaaag
actttcactgtagaaaagaaggctaaaggtttgcttaggatttaggcagg
tgggcgtcgtctaagcatggcagaagtcctcgggcgcggctcctcgccgg
gtggccccgccgagtccttttctgtggcatcactgccagaggtctcgctt
cagtttccgaggtgaggacaaatggacggactgggcggcggtatttcgaa
gccagaaacattcaggactgacaaggagacggttccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51594449_51595583
seq2: B6Ng01-188E16.b_47_1196

seq1  GAATTCCAGAAGACTGCCCTGGCCATGGCAATAAAATGTGTTTTAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGACTGCCCTGGCCATGGCAATAAAATGTGTTTTAATAGG  50

seq1  TTCAATGGCATCTTTGGAAAAATAGCCCCATGCCTATTATATTATTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGCATCTTTGGAAAAATAGCCCCATGCCTATTATATTATTGTGT  100

seq1  GTGCTCTATTTCATTCTGGGGTTAAATGAAGTGAGAGATGGGAGGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTATTTCATTCTGGGGTTAAATGAAGTGAGAGATGGGAGGCTTGT  150

seq1  GAAGTAAAAACTTGCCTGTATATATTCTGTTTTCTTTTTCTTTCTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAAACTTGCCTGTATATATTCTGTTTTCTTTTTCTTTCTAAGAC  200

seq1  TGTTGTACGTCTAAGGTTCAGATACTTGAATGCTTGGATCCCGGTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACGTCTAAGGTTCAGATACTTGAATGCTTGGATCCCGGTTGTTG  250

seq1  GAGTATTTAGGAAGGATTAGGATGTGTGGCCTGCTGGAGGTGGTGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTAGGAAGGATTAGGATGTGTGGCCTGCTGGAGGTGGTGTGTCA  300

seq1  CTGAGGGTGGGCTTTGAGGTTTTACAAGTCCTTGACAGCTCCAGGTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTGGGCTTTGAGGTTTTACAAGTCCTTGACAGCTCCAGGTTCAC  350

seq1  TTTCTCTCTGTTTTCATCTTGCAGATCAGATATAAGTGCTCAGCTACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGTTTTCATCTTGCAGATCAGATATAAGTGCTCAGCTACTGC  400

seq1  GCGCCAGCGCTGTGCTTGCCTACCTGCTGCTGTCCCTGCCTGCAGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGCGCTGTGCTTGCCTACCTGCTGCTGTCCCTGCCTGCAGCTGTC  450

seq1  CCTACCTGCTTCTATCCCTAACTGTTGCTGTCCTTATCTGCTGCAGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGCTTCTATCCCTAACTGTTGCTGTCCTTATCTGCTGCAGTCCC  500

seq1  TACCCGCTGTTGTTTCCTCCCTGCTGCTGTCCCTGCCTGCTGCTATGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGCTGTTGTTTCCTCCCTGCTGCTGTCCCTGCCTGCTGCTATGCTC  550

seq1  TCCACTATTAAAGTCATGGATTAACCCTTTGAAGCTGTAAGCAATGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATTAAAGTCATGGATTAACCCTTTGAAGCTGTAAGCAATGGCAA  600

seq1  CCTGAACTAAGACAAGGACCCAAGTTCAATCTCTGCACCTCATGGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTAAGACAAGGACCCAAGTTCAATCTCTGCACCTCATGGTAGAA  650

seq1  GGAAAGAAACAACTGGAGAAAGTTTTCCTCTGATCTCATATGTTCCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAACAACTGGAGAAAGTTTTCCTCTGATCTCATATGTTCCATGA  700

seq1  CACACACACACACACCTGCAATCATAAAATGTACACAGGACAACAACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCTGCAATCATAAAATGTACACAGGACAACAACAAC  750

seq1  AACAATAATAAATTTACAAAAGAATTCCAACACAATGAACATTTATTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATAAATTTACAAAAGAATTCCAACACAATGAACATTTATTAAG  800

seq1  GCC-TTGCTCTTTTTCCAGCTTTAAACCCACA-TTTTCTAAGAATATTAC  848
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCTTTGCTCTTTTTCCAGCTTTAAACCCACATTTTTCTAAGAATATTAC  850

seq1  CCTGAATACTATTCTTCATAAAAGTCACTTCCAAATCATTTATACATCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATACTATTCTTCATAAAAGTCACTTCCAAATCATTTATACATCTC  900

seq1  CAGTGG-TTCCTGGCTTTGCTTT-ATCAGATTATTA-TTCCATTAGTGAC  945
      |||||| |||||||||||||||| |||||||||||| ||| |||||||||
seq2  CAGTGGTTTCCTGGCTTTGCTTTAATCAGATTATTATTTCAATTAGTGAC  950

seq1  CCCTCTGGAGCCAC-TCATTAAAAAGAAGTAAGGG-ATAGAAG-AGTGAC  992
      |||||||||||||| ||||| |||||||||||||| ||||||| ||||||
seq2  CCCTCTGGAGCCACTTCATT-AAAAGAAGTAAGGGAATAGAAGAAGTGAC  999

seq1  GGCTTACTGATTAAGG--ATATTGGTGGTGGTGGCAGTGCAAGCC-TTTA  1039
      ||||||||||||||||   ||||||||||||  |||||||||||| ||||
seq2  GGCTTACTGATTAAGGGATTATTGGTGGTGGGTGCAGTGCAAGCCTTTTA  1049

seq1  ATCCCAGC-ATCAGG-AGGCACAA-GCAGGTGGAT-CTCTGAATTCAAGG  1085
      || ||||| |||||| |||||||| ||||  |||| ||||| |||  || 
seq2  ATTCCAGCAATCAGGAAGGCACAAGGCAGTGGGATCCTCTGGATTTCAGC  1099

seq1  CCAGCCTGGTC-TATAGAGCAAGTTCC-AGGACAGCCAGGGCTACACAGA  1133
      |||| || | | ||||||||||||||| |||||||||| |||||||||||
seq2  CCAGGCTTGACTTATAGAGCAAGTTCCAAGGACAGCCA-GGCTACACAGA  1148

seq1  GA  1135
      ||
seq2  GA  1150

seq1: chr14_51685034_51686120
seq2: B6Ng01-188E16.g_67_1154 (reverse)

seq1  CTGGAACGTTCT-CTTGTCCTGTTCCTGAAATGTTCT-GCTTCG-AATAC  47
      |||||||  ||| ||||||    |||||||   |||| |||||| |||||
seq2  CTGGAACCGTCTCCTTGTC--AGTCCTGAATGTTTCTGGCTTCGAAATAC  48

seq1  GGCCGCCCCAGTCCGT-CATTTGTCCCTCACCTCGGAAACTGAAGCGGGA  96
       |||| |||||||||| ||||||| |||||||||||||||||||||| ||
seq2  CGCCG-CCCAGTCCGTCCATTTGT-CCTCACCTCGGAAACTGAAGCGAGA  96

seq1  CCTCTGGCAGTGATG-CACAG-AAAGGACTCGGCCGGGGCCACCCGGCGG  144
      ||||||||||||||| ||||| ||||||||||| |||||||||||||| |
seq2  CCTCTGGCAGTGATGCCACAGAAAAGGACTCGG-CGGGGCCACCCGGC-G  144

seq1  AGGAGCCGCGCCCGAGGACTTCTGCCATGCTTAGACGGCGCCCACCTGCC  194
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAGCCGCGCCCGAGGACTTCTGCCATGCTTAGACGACGCCCACCTGCC  194

seq1  TAAATCCT-AGCAAACCTTTAGCCTTCTTTTCTACAGTGAAAGTCTTTCT  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTAAGCAAACCTTTAGCCTTCTTTTCTACAGTGAAAGTCTTTCT  244

seq1  CAAAGGCTCAAGCGAAGAAGCAAACGGTTCATACCAGAACAGATCTAACC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTCAAGCGAAGAAGCAAACGGTTCATACCAGAACAGATCTAACC  294

seq1  CTTCCCTAAGGACACACCCCAACACATCTTTGCTATTAAAAAATAGATCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAAGGACACACCCCAACACATCTTTGCTATTAAAAAATAGATCA  344

seq1  AATTTGCGTCTTTAAACTTTTTCAAATCCTTGTTTCTATAACCTGGTAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCGTCTTTAAACTTTTTCAAATCCTTGTTTCTATAACCTGGTAAA  394

seq1  CAAAAACAAAGACGTGTGTTTTCTTAAGAAAAACTTCAGCTATCCACTAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAGACGTGTGTTTTCTTAAGAAAAACTTCAGCTATCCACTAC  444

seq1  CTAAAATACATTCATTACATCCTGTCTTATATAAATGTACACATGATGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATACATTCATTACATCCTGTCTTATATAAATGTACACATGATGCT  494

seq1  GCTGGCCTCAAAACATTTTGAAGGAAATGGATGAGCTCCGATAATTAGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCAAAACATTTTGAAGGAAATGGATGAGCTCCGATAATTAGGA  544

seq1  AAATAAGCCTTCTACGGCAGATGTTCTTGATCCGGGTTTGAGTCTACAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCCTTCTACGGCAGATGTTCTTGATCCGGGTTTGAGTCTACAGA  594

seq1  GGTCTCACCAAGCTGTCCTGTGCACAGAGCCGGGCAAGCGGGGTCTTTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACCAAGCTGTCCTGTGCACAGAGCCGGGCAAGCGGGGTCTTTGT  644

seq1  TGGCTTGCTTAGACCCGCGTCTCCCAGCACTGCCCGGCCACCGGTCCTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTTAGACCCGCGTCTCCCAGCACTGCCCGGCCACCGGTCCTCA  694

seq1  GACTTTCTAGGTGGCCCTGGCCACTACACCCCCAAGAAAGTCACAAGGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTAGGTGGCCCTGGCCACTACACCCCCAAGAAAGTCACAAGGTT  744

seq1  CGTTCTTTAAGACTGTAAATTACTATATCATTTGGTTAGCTATGTAGTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTTAAGACTGTAAATTACTATATCATTTGGTTAGCTATGTAGTGT  794

seq1  ACTTTTTCAGAAATAAGTGCCCATTATTATAGGGTTTTTTTTTTTTTGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCAGAAATAAGTGCCCATTATTATAGGGTTTTTTTTTTTTTGTC  844

seq1  ATCTTTACTGCTATAATTTTCAGAGAGTGGGTTTAGACAAAATCAGCCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTGCTATAATTTTCAGAGAGTGGGTTTAGACAAAATCAGCCTC  894

seq1  AATCAAAACTGCCCTCCCTCCTTCCCTTCTTGCTCTTTCTTCTCTCCCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACTGCCCTCCCTCCTTCCCTTCTTGCTCTTTCTTCTCTCCCAT  944

seq1  CATCCTCTGGTCCTTGGCTCCTTTCTGTTTCCCCGCAATACTACTCATCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTGGTCCTTGGCTCCTTTCTGTTTCCCCGCAATACTACTCATCC  994

seq1  CCACCTGGCCACAGTTTGGTGGGCTCTCTTCCATTCTCTGCAGGGACTGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGCCACAGTTTGGTGGGCTCTCTTCCATTCTCTGCAGGGACTGA  1044

seq1  TTTATCTTCCTTTATGGTTTTCCATTACACATTTAAGAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCCTTTATGGTTTTCCATTACACATTTAAGAGAATTC  1088