MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-188O16
Chromosome	14 (Build37)
Map Location	119,143,311 - 119,311,833
singlet/doublet	doublet
Overlap gene	Cldn10, Dzip1
Upstream gene	Gpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
Downstream gene	Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324, LOC100043830
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gpc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23888 MGI:1346322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	5730405N03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70509 MGI:1917759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100043822 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043822
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 49 ESTs

name	Dct (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13190 MGI:102563
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tgds (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76355 MGI:1923605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr180 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58245 MGI:1930949
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043824 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 162 ESTs, 3 Proteins pseudo : _no_value

name	LOC100043539 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043539
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Sox21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223227 MGI:2654070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043825 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043825
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs

name	EG668814 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668814 MGI:3643023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins

name	LOC435422 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435422
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Abcc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239273 MGI:2443111
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cldn10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58187 MGI:1913101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Dzip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66573 MGI:1914311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnajc3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100037258 MGI:107373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043828 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Ugcgl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66435 MGI:1913685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hs6st3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50787 MGI:1354960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619601 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619601
definition	note : tera pseudogene pseudo : _no_value

name	EG621324 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621324 MGI:3643635
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 83 ESTs pseudo : _no_value

name	LOC100043830 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Gpc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119943144 GeneID:23888 MGI:1346322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glypican 6 transcript_id : NM_001079844.1

name	Gpc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119943140 GeneID:23888 MGI:1346322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glypican 6 transcript_id : NM_011821.2

name	LOC100043822 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265866 GeneID:100043822
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 49 ESTs product : hypothetical protein LOC100043822 transcript_id : XM_001481025.1

name	Dct (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352300 GeneID:13190 MGI:102563
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dopachrome tautomerase transcript_id : NM_010024.2

name	Tgds (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42475986 GeneID:76355 MGI:1923605
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TDP-glucose 4,6-dehydratase transcript_id : NM_029578.2

name	Gpr180 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366916 GeneID:58245 MGI:1930949
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 180 transcript_id : NM_021434.3

name	LOC100043539 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265761 GeneID:100043539
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043539 transcript_id : XM_001480377.1

name	Sox21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343119 GeneID:223227 MGI:2654070
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SRY-box containing gene 21 transcript_id : NM_177753.2

name	LOC100043825 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265870 GeneID:100043825
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs product : hypothetical protein LOC100043825 transcript_id : XM_001481034.1

name	EG668814 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397363 GeneID:668814 MGI:3643023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins product : predicted gene, EG668814 transcript_id : XM_001003762.1

name	Abcc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142358785 GeneID:239273 MGI:2443111
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family C (CFTR/MRP), member 4 transcript_id : NM_001033336.2

name	Cldn10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357583 GeneID:58187 MGI:1913101
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : claudin 10 transcript_id : NM_023878.2

name	Cldn10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226219 GeneID:58187 MGI:1913101
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : claudin 10 transcript_id : NM_021386.3

name	Dzip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57242787 GeneID:66573 MGI:1914311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DAZ interacting protein 1 transcript_id : NM_025943.2

name	Dnajc3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542562 GeneID:100037258 MGI:107373
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily C, member 3A transcript_id : NM_008929.2

name	Ugcgl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486936 GeneID:66435 MGI:1913685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-glucose ceramide glucosyltransferase-like 2 transcript_id : NM_001081252.1

name	Hs6st3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802434 GeneID:50787 MGI:1354960
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heparan sulfate 6-O-sulfotransferase 3 transcript_id : NM_015820.2

name	LOC100043830 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265872 GeneID:100043830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043830 transcript_id : XM_001481042.1

name	Gpc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119943145 GeneID:23888 MGI:1346322
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : glypican 6 isoform 1 protein_id : NP_001073313.1

name	Gpc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106325 CCDS:CCDS27330.1 GeneID:23888 MGI:1346322
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : glypican 6 isoform 2 protein_id : NP_035951.1

name	LOC100043822 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265867 GeneID:100043822
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481075.1

name	Dct (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753614 CCDS:CCDS27331.1 GeneID:13190 MGI:102563
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0042470 - melanosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IDA] GO_function : GO:0004167 - dopachrome isomerase activity [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0048468 - cell development [Evidence IMP]; GO:0006583 - melanin biosynthesis from tyrosine [Evidence IDA]; GO:0008152 - metabolism [Evidence IEA]; GO:0048066 - pigmentation during development [Evidence IMP] codon_start : 1 exception : mismatches in translation note : tyrosinase-related protein-2 product : dopachrome tautomerase protein_id : NP_034154.1

name	Tgds (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42475987 CCDS:CCDS27332.1 GeneID:76355 MGI:1923605
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0050662 - coenzyme binding [Evidence IEA]; GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0044237 - cellular metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : TDP-glucose 4,6-dehydratase protein_id : NP_083854.2

name	Gpr180 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560316 CCDS:CCDS27333.1 GeneID:58245 MGI:1930949
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : intimal thickness-related receptor protein_id : NP_067409.2

name	LOC100043539 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265762 GeneID:100043539
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480427.1

name	Sox21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244252 CCDS:CCDS27334.1 GeneID:223227 MGI:2654070
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA] [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : HMG-box protein SOX21; DNA-binding protein SOX21 product : SRY-box 21 protein_id : NP_808421.1

name	LOC100043825 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265871 GeneID:100043825
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481084.1

name	EG668814 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94397364 GeneID:668814 MGI:3643023
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001003762.1

name	Abcc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83716009 CCDS:CCDS27335.1 GeneID:239273 MGI:2443111
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0005886 - plasma membrane [Evidence ISS]; GO:0031088 - platelet dense granule membrane [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO:0005254 - chloride channel activity [Evidence IEA]; GO:0015559 - multidrug efflux pump activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006855 - multidrug transport [Evidence TAS] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein_id : NP_001028508.1

name	Cldn10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21617849 CCDS:CCDS27336.1 GeneID:58187 MGI:1913101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence ISS] [Evidence IEA] GO_function : GO:0042802 - identical protein binding [Evidence ISS]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence ISS] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1; claudin-10 product : claudin 10 isoform a protein_id : NP_076367.1

name	Cldn10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946728 CCDS:CCDS27337.1 GeneID:58187 MGI:1913101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence ISS] [Evidence IEA] GO_function : GO:0042802 - identical protein binding [Evidence ISS]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence ISS] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2; claudin-10 product : claudin 10 isoform b protein_id : NP_067361.1

name	Dzip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57242788 GeneID:66573 MGI:1914311
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] [Evidence ISS]; GO:0043234 - protein complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007281 - germ cell development [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : DAZ interacting protein 1 protein_id : NP_080219.2

name	Dnajc3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542563 CCDS:CCDS27338.1 GeneID:100037258 MGI:107373
definition	codon_start : 1 note : protein kinase, interferon inducible double stranded RNA dependent inhibitor; DnaJ (Hsp40) homolog, subfamily C, member 3 product : DnaJ (Hsp40) homolog, subfamily C, member 3B protein_id : NP_032955.2

name	Ugcgl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486937 GeneID:66435 MGI:1913685
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IEA] GO_process : GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 product : UDP-glucose:glycoprotein glucosyltransferase 2 protein_id : NP_001074721.1

name	Hs6st3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657192 CCDS:CCDS27339.1 GeneID:50787 MGI:1354960
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : heparan sulfate 6-O-sulfotransferase 3 protein_id : NP_056635.1

name	LOC100043830 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265873 GeneID:100043830
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481092.1

name	LOC435422 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435422
definition	number : 2 pseudo : _no_value

name	LOC435422 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435422
definition	number : 1 pseudo : _no_value

name	LOC100043828 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043828
definition	number : 1 pseudo : _no_value

name	EG621324 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621324
definition	number : 1 pseudo : _no_value

name	EG621324 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621324
definition	number : 2 pseudo : _no_value

name	5730405N03Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149265868 GeneID:70509 MGI:1917759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5730405N03 gene transcript_id : XR_035474.1

name	LOC100043824 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265869 GeneID:100043824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 162 ESTs, 3 Proteins product : similar to U1 snRNP-specific protein C pseudo : _no_value transcript_id : XR_034949.1

clone name	MSMg01-435G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184C12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-542F15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-398C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221M04
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-188O16.b	B6Ng01-188O16.g
ACC	GA013079	GA013080
length	677	1,188
definition	B6Ng01-188O16.b	B6Ng01-188O16.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(119,311,161 - 119,311,833)	(119,143,311 - 119,144,491)
sequence	gaattcataagaaatcgttttctaactagatcttctcttgcacagagtat aatacaaaggcccagaccgacaggctccagaaggagattgacatgttgaa ggaacagctgcagctcactaggtctcagctggagtctgcacagcactctc atgcagttcgcttctctaaggtgggacacagggctctgtcctggagatgg tgcaatgacaagtactttaatgcagggaaagaggcatgctggcttcatgg tgtgtgtgtgtgtgtgtcagtgtgtatgtgtcagtgtgtgtgtgtgtgtg tgtgtgtcagtgtgtgtgtgtcagtgtgtgtcaatgtgtctgtgtcagtg tgtgtgtcagtgtgtgtctatgtcagtgtgtgtgtgtcagtgtgtgtcaa tgtgtctgtgtcagtgtgtgtctatgtcagtgtgtgtcagtgtgtgtcta tgtcagtgtgtgtcaacgtgtctgtgtcattgtgtgtgtcagtgtgtgtc agcatgtgtgtatgagagagagtgtgtgtgtatcgtctgtgtatgatata tgtgtgtattgagcatgatatgtgttgcatgtatgtatgcatactcgtat gggctggagtcctttattccttttgagacaatatctctcactgaaccctg gttaaaggctgaatgccctcaggcctc	gaattcacttagcaaaacacagcaaacgtcacagttagcatcatgatgct cacatagctagaagaaactatggcagctttgtgttctgtagcgccgcccc cccaccactgccctggtgtgcagagatgaacagaggtggtgtccttaact agggggtgctctgtctaggaggacactgtcattgtgacctttatggacac tgtcagttgtgacactgtgaaccccaacccgcccccacctcagaggttaa tattaaacattttcattaaactacttctctgttggcttaccaaatacaag cagcacactggagggccaactgagccttcctcatttccaacagcaaatcc agaaaggcgagcactgaggtccttccttcccaaacaaaagccctcaggga tcccaatacagctcatctctgctaatcattcacgattgcatcactcgctg ttgcctgatattgcttctttggttattttgaatttaattctcattctctg aggtcaaatggaggagcaatgactgactttgaggtgaatggactgctttt ttcattgtcccttcaagcatcgctgcattttaggtttaaggtctagaaga aggaaatgatgcatgcttcttgtcttcagagtttgaaatcctactgggag aaaaaggtagtttataagaaaaaaaatgtgcatgttagcgtcgaggcgat agcccagtcagtaaaatatatgagccctgagtttggaggccgagcatcca tgtataagctatgtgtgaggagtccatgccagtaatctctacactaggat gatgccaggagggtccctggagtttgctggctggctagtttagaaagatc aacaagctccagggttcagtgagagaccctgtctcaaaaaatcagcacag gaagagattgaggtacatctaacatcagtctctagcctcagcactgaatt taaacacatacgcataaacacgttaaataccaaagggctcgggaagaaga tggagcagatattcaccacaaagaagctctaggaggtagggaacaaataa ttaagccaggaggttaggaccctgtttcatcagtcgaaatacaggaggcc atccataggtcagttaacatttgtagccgcccacttcacagaaagtcgga gttgctcctgctactaagcactcttcaccacacatcca
quality values	Open. Hide. 58 36 32 35 58 26 20 62 62 62 62 54 62 47 41 62 47 62 62 62 62 62 54 51 62 62 54 47 62 49 54 62 62 34 28 24 34 30 46 38 27 39 43 46 46 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 59 62 62 62 62 62 62 62 62 59 49 54 42 48 62 59 59 59 59 62 62 59 62 62 62 62 62 54 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 54 59 59 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 59 62 62 62 62 62 62 62 62 62 62 62 56 62 51 62 62 62 62 59 62 59 56 62 59 62 62 49 50 46 48 48 56 51 51 50 31 40 34 62 62 62 62 62 62 59 62 56 59 59 59 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 59 59 62 62 62 62 62 54 54 56 62 62 59 62 56 59 62 59 62 49 59 59 51 56 51 62 62 51 59 50 50 59 59 39 38 46 43 35 31 46 50 38 50 36 48 50 59 59 59 59 62 62 59 56 40 51 59 50 59 56 62 59 51 49 23 29 38 43 43 34 34 34 59 56 59 59 59 62 62 62 49 49 59 50 59 51 59 59 59 46 62 62 49 49 62 59 62 62 62 24 24 13 13 12 24 59 49 49 56 50 59 59 62 62 62 59 43 56 56 45 59 59 50 43 34 24 6 10 10 6 16 15 45 15 13 13 12 18 13 59 30 59 34 59 56 62 36 44 62 59 59 51 59 44 43 43 38 45 43 51 59 56 43 56 50 50 43 62 59 51 62 56 56 47 51 56 51 56 56 56 32 26 24 24 16 24 29 18 14 24 35 37 47 51 51 39 25 24 22 24 24 22 35 31 33 27 22 31 24 23 21 14 31 27 27 24 42 31 19 14 27 20 14 23 15 26 22 22 24 31 42 24 37 15 21 25 37 17 34 42 42 38 14 16 25 30 25 34 23 31 38 11 32 14 14 21 10 20 23 50 34 24 14 14 27 31 23 26 20 19 11 14 10 15 20 20 14 27 28 30 10 20 23 12 13 12 23 10 27 35 22 28 39 35 15 10 17 23 14 14 14 15	Open. Hide. 62 47 47 44 62 59 56 59 62 59 62 18 22 19 18 23 23 23 23 29 23 25 27 45 46 59 56 62 54 54 62 62 59 62 54 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 49 46 46 32 33 48 43 62 54 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 54 62 62 62 62 62 62 59 59 54 62 62 59 59 62 59 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 59 62 62 59 62 59 54 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 59 59 59 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 59 38 49 59 62 62 62 62 62 62 59 62 62 62 59 62 62 59 62 62 56 59 56 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 59 59 59 56 56 56 62 62 62 56 62 62 62 62 62 62 62 56 56 56 56 56 56 62 62 62 54 47 62 62 62 62 62 56 62 56 62 56 56 62 62 62 62 62 62 62 56 56 62 56 43 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 46 62 58 58 58 58 58 58 58 54 39 54 52 54 54 58 43 48 52 54 42 50 52 52 58 51 54 47 58 54 58 58 58 44 46 52 54 54 52 58 54 54 54 58 58 58 54 52 50 58 58 58 54 40 47 52 54 58 54 50 45 52 54 49 54 54 52 54 58 54 58 49 58 58 58 48 54 51 58 50 58 41 46 58 41 58 50 52 54 51 50 58 53 50 58 43 23 42 49 58 58 48 58 58 39 58 54 50 58 58 49 58 53 53 54 58 58 39 41 58 37 42 22 50 58 42 53 58 58 48 58 31 33 50 50 42 50 50 49 49 41 58 48 48 32 58 58 58 58 40 31 51 30 50 41 47 58 37 50 51 41 58 38 49 58 58 58 58 58 58 23 43 53 41 41 49 39 41 53 47 28 35 37 49 50 41 37 32 47 32 51 50 37 51 39 42 39 52 46 47 42 33 47 52 45 42 52 34 54 54 41 33 33 35 41 35 35 50 21 38 40 38 40 47 30 14 40 54 50 22 9 40 21 38 26 39 33 46 29 47 37 45 29 51 21 39 38 40 33 45 37 52 31 44 34 29 45 51 40 42 35 34 31 27 51 37 33 39 42 45 29 39 53 47 47 26 40 34 30 45 32 32 34 40 37 29 33 14 21 45 41 22 53 41 30 40 32 22 40 25 25 18 32 32 15 13 52 33 12 17 30 23 14 8 16 45 18 25 51 30 27 25 30 32 40 15 31 31 51 28 31 29 23 28 46 28 31 26 46 46 30 29 28 21 19 14 31 30 21 29 30 31 37 19 31 14 18 31 16 33 21 26 31 26 31 31 33 25 46 25 31 24 23 24 28 26 22 31 35 26 21 32 41 38 39 21 38 30 15 10 15 18 23 22 27 32 18 32 30 28 24 31 17 21 27 19 34 33 18 17 27 6 17 31 24 21 30 31 22 31 21 13 9 9 19 20 27 32 38 20 32 19 19 13 13 31 29 11 24 34 37 21 11 42 48 26 21 36 22 29 13 30 8 26 25 33 9 22 14 26 17 24 11 21 7 20 24 23 19 14 43 19 8 23 17 18 4 11 19 7 37 23 8 34 32 32 43 13 16 7 6 14 15 14 34 15 23 19 25 4 13 16 12 16 6 5 13 21 24 9 7 6 6 14 7 40 24 20 8 25 11 16 28 14 27 8 9 6 18 7 13 20 15 9 28 6 16 20 6 5 28 28 16 9 9 5 8 3 8 7 8 17 10 10 6 27 5 8 7 6 27 5 6 18 7 16 10 8 20 9 28 25 16 15 21 20 9 27 6 10 9 21 30 20 9 9 21 10 12 6 14 7 22 5 9 9 20 8 13 5 3 3 5 5 10 20 4 6 6 5 21 10 12 4 2 1 1 5 5 6 11 16 15 4 5 4 3 4 6 6 5 5 2 1 2 4 7 5 3 2 1 3 17 3 2 1 4 6 6 4 8 12 6 4 7 4 2 5 8 10 5 12 5 9 3 6 21 13 13 19 5 8 4 4 10 4 7 6 5 9 12 13 6

Alignment Information

BAC End 1

BAC End 2

seq1: chr14_119311161_119311833
seq2: B6Ng01-188O16.b_51_727 (reverse)

seq1  GAGGCCTGAGGGCATTCAGCC-TTAACCA-GGTTCAGTGAGAGATATTGT  48
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  GAGGCCTGAGGGCATTCAGCCTTTAACCAGGGTTCAGTGAGAGATATTGT  50

seq1  CTC-AAAGGAAT-AAGGACTCCAGCCCATACGAGTATGCATACATACATG  96
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGAATAAAGGACTCCAGCCCATACGAGTATGCATACATACATG  100

seq1  CAACACATATCATGCTCAATACACACATATATCATACACAGACGATACAC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATATCATGCTCAATACACACATATATCATACACAGACGATACAC  150

seq1  ACACACTCTCTCTCATACACACATGCTGACACACACTGACACACACAATG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTCTCTCATACACACATGCTGACACACACTGACACACACAATG  200

seq1  ACACAGACACGTTGACACACACTGACATAGACACACACTGACACACACTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACGTTGACACACACTGACATAGACACACACTGACACACACTG  250

seq1  ACATAGACACACACTGACACAGACACATTGACACACACTGACACACACAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACACACACTGACACAGACACATTGACACACACTGACACACACAC  300

seq1  ACTGACATAGACACACACTGACACACACACTGACACAGACACATTGACAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATAGACACACACTGACACACACACTGACACAGACACATTGACAC  350

seq1  ACACTGACACACACACACTGACACACACACACACACACACACACTGACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACACACACACACTGACACACACACACACACACACACACTGACAC  400

seq1  ATACACACTGACACACACACACACACACCATGAAGCCAGCATGCCTCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTGACACACACACACACACACCATGAAGCCAGCATGCCTCTTT  450

seq1  CCCTGCATTAAAGTACTTGTCATTGCACCATCTCCAGGACAGAGCCCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATTAAAGTACTTGTCATTGCACCATCTCCAGGACAGAGCCCTGT  500

seq1  GTCCCACCTTAGAGAAGCGAACTGCATGAGAGTGCTGTGCAGACTCCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCTTAGAGAAGCGAACTGCATGAGAGTGCTGTGCAGACTCCAGC  550

seq1  TGAGACCTAGTGAGCTGCAGCTGTTCCTTCAACATGTCAATCTCCTTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTAGTGAGCTGCAGCTGTTCCTTCAACATGTCAATCTCCTTCTG  600

seq1  GAGCCTGTCGGTCTGGGCCTTTGTATTATACTCTGTGCAAGAGAAGATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTCGGTCTGGGCCTTTGTATTATACTCTGTGCAAGAGAAGATCT  650

seq1  AGTTAGAAAACGATTTCTTATGAATTC  673
      |||||||||||||||||||||||||||
seq2  AGTTAGAAAACGATTTCTTATGAATTC  677

seq1: chr14_119143311_119144491
seq2: B6Ng01-188O16.g_68_1255

seq1  GAATTCACTTAGCAAAACACAGCAAACGTCACAGTTAGCATCATGATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAGCAAAACACAGCAAACGTCACAGTTAGCATCATGATGCT  50

seq1  CACATAGCTAGAAGAAACTATGGCAGCTTTGTGTTCTGTAGCGCCGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCTAGAAGAAACTATGGCAGCTTTGTGTTCTGTAGCGCCGCCCC  100

seq1  CCCACCACTGCCCTGGTGTGCAGAGATGAACAGAGGTGGTGTCCTTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACTGCCCTGGTGTGCAGAGATGAACAGAGGTGGTGTCCTTAACT  150

seq1  AGGGGGTGCTCTGTCTAGGAGGACACTGTCATTGTGACCTTTATGGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGCTCTGTCTAGGAGGACACTGTCATTGTGACCTTTATGGACAC  200

seq1  TGTCAGTTGTGACACTGTGAACCCCAACCCGCCCCCACCTCAGAGGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTGTGACACTGTGAACCCCAACCCGCCCCCACCTCAGAGGTTAA  250

seq1  TATTAAACATTTTCATTAAACTACTTCTCTGTTGGCTTACCAAATACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACATTTTCATTAAACTACTTCTCTGTTGGCTTACCAAATACAAG  300

seq1  CAGCACACTGGAGGGCCAACTGAGCCTTCCTCATTTCCAACAGCAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACTGGAGGGCCAACTGAGCCTTCCTCATTTCCAACAGCAAATCC  350

seq1  AGAAAGGCGAGCACTGAGGTCCTTCCTTCCCAAACAAAAGCCCTCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCGAGCACTGAGGTCCTTCCTTCCCAAACAAAAGCCCTCAGGGA  400

seq1  TCCCAATACAGCTCATCTCTGCTAATCATTCACGATTGCATCACTCGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATACAGCTCATCTCTGCTAATCATTCACGATTGCATCACTCGCTG  450

seq1  TTGCCTGATATTGCTTCTTTGGTTATTTTGAATTTAATTCTCATTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGATATTGCTTCTTTGGTTATTTTGAATTTAATTCTCATTCTCTG  500

seq1  AGGTCAAATGGAGGAGCAATGACTGACTTTGAGGTGAATGGACTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATGGAGGAGCAATGACTGACTTTGAGGTGAATGGACTGCTTTT  550

seq1  TTCATTGTCCCTTCAAGCATCGCTGCATTTTAGGTTTAAGGTCTAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTCCCTTCAAGCATCGCTGCATTTTAGGTTTAAGGTCTAGAAGA  600

seq1  AGGAAATGATGCATGCTTCTTGTCTTCAGAGTTTGAAATCCTACTGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGATGCATGCTTCTTGTCTTCAGAGTTTGAAATCCTACTGGGAG  650

seq1  AAAAAGGTAGTTTATAAGAAAAAAAATGTGCATGTTAGCGTCGAGGCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTAGTTTATAAGAAAAAAAATGTGCATGTTAGCGTCGAGGCGAT  700

seq1  AGCCCAGTCAGTAAAATATATGAGCCCTGAGTTTGGAGGCCGAGCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTCAGTAAAATATATGAGCCCTGAGTTTGGAGGCCGAGCATCCA  750

seq1  TGTATAAGCTATGTGTGAGGAGTCCATGCCAGTAATCTCTACACTAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGCTATGTGTGAGGAGTCCATGCCAGTAATCTCTACACTAGGAT  800

seq1  GATGCCAGGAGGGTCCCTGGAGTTTGCTGGCTGGCTAGTTTAGAAAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGGAGGGTCCCTGGAGTTTGCTGGCTGGCTAGTTTAGAAAGATC  850

seq1  AACAAGCTCCA-GGTTCAGTGAGAGACCCTGTCTC-AAAAATCAGCACAG  898
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AACAAGCTCCAGGGTTCAGTGAGAGACCCTGTCTCAAAAAATCAGCACAG  900

seq1  GAAGAGATTGAGGTACATCTAACATCAGTCTCTAGCCTCAGCACTG-ATT  947
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAGAGATTGAGGTACATCTAACATCAGTCTCTAGCCTCAGCACTGAATT  950

seq1  TAAACACATACGCATAAACACGTTAAATACCAAA-GGCTCGGGAAG-AGA  995
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAAACACATACGCATAAACACGTTAAATACCAAAGGGCTCGGGAAGAAGA  1000

seq1  TGGAAGCAGAATAATTCA-CACAAAGAAGCTCTTAGA-GTAGGAAACAAA  1043
      ||| ||||||   ||||| ||||||||||||||  || ||||| ||||||
seq2  TGG-AGCAGA--TATTCACCACAAAGAAGCTCTAGGAGGTAGGGAACAAA  1047

seq1  TAATTTAAAGCCAGAAG--TAAGA-CCTGTTTCATCAGGTCGAAATACA-  1089
      |||||  ||||||| ||  || || |||||||||||| ||||||||||| 
seq2  TAATT--AAGCCAGGAGGTTAGGACCCTGTTTCATCA-GTCGAAATACAG  1094

seq1  GAGG-CATCCATAAGTCCAGTAACATATGTAGCCGCACACTCCACAGAGA  1138
      |||| |||||||| |||   |||||| ||||||||| |||| |||||| |
seq2  GAGGCCATCCATAGGTCAGTTAACATTTGTAGCCGCCCACTTCACAGAAA  1144

seq1  GCCCGGTGTGCTCCTGCTTACTAAGCCATCTTCA-CACAC-TCCA  1181
      | | |   ||||||||| ||||||||  |||||| ||||| ||||
seq2  GTCGGAGTTGCTCCTGC-TACTAAGCACTCTTCACCACACATCCA  1188

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information