BAC Information

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BAC

Clone NameB6Ng01-188O21
Chromosome14 (Build37)
Map Location 110,008,273 - 110,062,184
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1, LOC640892
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188O21.bB6Ng01-188O21.g
ACCGA013089GA013090
length1,0741,176
definitionB6Ng01-188O21.b B6Ng01-188O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,061,101 - 110,062,184)(110,008,273 - 110,009,448)
sequence
gaattcacttttagtttttttcaaggttatacaaatcaagcaacagaaac
tttatgaggcaagcaaattatataaatgcgtattgaagacaataagtaac
cacttttgcagagaaataaacctagctcaaggctgacatttgttgataag
tacaacattttcccttatttgtttactaaatagggtcaaggacaaaacat
tttgtataacctttcttcttcttttcacttgtcaaagtgatatgaacaaa
gcaaatattctacaggaagttctccatacccttgaaggcggagactatca
tgcttagtgtggtgtgtcccctgtgacttgctcacagactacattcctga
gccagagtcatttcctaaaaggacagcaggttactggcaaatctccaccg
aaatatcatcactttgaagctaatagtaaattagaacaatgctattaaat
ttgatgggagtcaaaaccatttttctgacataaaatagatctcatatcaa
tacccttaatgaaaatgtccccaaagtatcaataatatggtcttataaac
cctgccacaacatgaactgtttaaaaattttaagagaggcctattcttgc
ctttaaaactgaattgtagtcccacatttcttattaaaggaacaactaaa
gaatgcacttgtttataaaaagtatgaacacctttgattcagctagaatg
actaggtaactatactcagagattacagatttaggatggtttcctccgac
tggtatgaaagggaacatggaaccttggtagtccgtaaaatctcctgaaa
tctgctcattagaattctgagtactcacttcagtgggttttaagggaagg
ttactgactcctggaggatcctcttaacacataagtgagtcctgattccc
ttgagacttaactgtttttttaccatttgattgttgttcattgatgttac
atgcaaaatggtttacaattgcatgcttggactcatgtctaattaaaaca
tcaggtttcaattgaccagggtaacgagtaacatgtaccactctgaggga
gggatggctgatgtgtcaacaaaa

gaattcagttttaacactaatttgaggaaaacagagtaaagacattgttc
ctatgaagtaaacattgggaatcaaaggaaacaagataaaattcaaacat
tttccatgggtaggtaaatgaatgatatgatccactttttgatatagacg
ttacaaactttttttattcatcttaaacaatggtacaattaattttcttc
atgcaaatattttattacaagtgtgcacacactctttacttataatgtaa
tgacctttgtcccaagtcctaatgcactaaattaaagatgcatatggtca
ccgctgtggtcgtaaagtggatgattttctcatccttcagcttcaatcat
tgcaatctttgtgtctgttataaatgaacaaacacacgcactgatttggc
agctggagagattacctagaaccttttttttttttttgtaagcagaaaat
ctattttgaagaatgaagactacaatgtttttgaatgtcggctttgtttc
atttatttaattttatttttcgctttttgagattacttgactagtaacta
caacaatgacaccaggggaaagatcgtttaaatgactctgcatgattgct
ttcccaaaccaaaaggagtagaaaatgaaaacactttaaaatgaaatatc
tcaaataaacatttcatttaggataaaactgaagctgcatacataccacc
ctattaaatattgaaagaacatttactgaagagctgaaggactcatttgc
aagagaataaacgtaatcgagcaagtacgctgctgagagtaaatatgtaa
aacctcggtcgaacagcatgcaattagcgcgaattcatcctggaaaacag
aaaacgatgatgagattgggattttggtaaaatctgtacttgcataacag
attgtcttacttatcatcgaacatgagcctagatgtacatgggatactct
tcggtgacctgaaaaatatcaaacagaaaggtaagaatggtgtacaatca
gggaaagtcagtagtatatttttctcaggtttatgtcttggagtagtact
acttatactttaaaatatacttacctaatttcatgggtgggtgcacacgc
atgcacacacgcacacacttaacataacatggggtggagtgcatgctgca
tggcctgtctatgcagcatgactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110061101_110062184
seq2: B6Ng01-188O21.b_48_1121 (reverse)

seq1  TTTTGTTGACAACATTCAGCCATTCCCTCCCTCAGAGTGTTACATTGTTA  50
      |||||||||| ||| ||||||| |||||||||||||||| |||| |||||
seq2  TTTTGTTGAC-ACA-TCAGCCA-TCCCTCCCTCAGAGTGGTACA-TGTTA  46

seq1  CTCGTTACCCTGGTCAAATTGAAACCCTGATGTTTTTAATTAAGACATGA  100
      ||||||||||||||| |||||||| ||||||| |||||||| ||||||||
seq2  CTCGTTACCCTGGTC-AATTGAAA-CCTGATG-TTTTAATT-AGACATGA  92

seq1  GTCCAAGCATGCAATTGTAAACCATTTTGCATGTAACATCAATGAAACAA  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCAAGCATGCAATTGTAAACCATTTTGCATGTAACATCAATG-AACAA  141

seq1  CAAATCAAATGGTAAAAAAACAGTTAAGTCTCAAGGGAATCAGGACTCAC  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AATCAAATGGTAAAAAAACAGTTAAGTCTCAAGGGAATCAGGACTCAC  190

seq1  TTATGTGTTAAGAGGATCCTCCAGGAGTCAGTAACCTTCCCTTAAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTTAAGAGGATCCTCCAGGAGTCAGTAACCTTCCCTTAAAACCC  240

seq1  ACTGAAGTGAGTACTCAGAATTCTAATGAGCAGATTTCAGGAGATTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTGAGTACTCAGAATTCTAATGAGCAGATTTCAGGAGATTTTAC  290

seq1  GGACTACCAAGGTTCCATGTTCCCTTTCATACCAGTCGGAGGAAACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACCAAGGTTCCATGTTCCCTTTCATACCAGTCGGAGGAAACCATC  340

seq1  CTAAATCTGTAATCTCTGAGTATAGTTACCTAGTCATTCTAGCTGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTGTAATCTCTGAGTATAGTTACCTAGTCATTCTAGCTGAATCA  390

seq1  AAGGTGTTCATACTTTTTATAAACAAGTGCATTCTTTAGTTGTTCCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTCATACTTTTTATAAACAAGTGCATTCTTTAGTTGTTCCTTTA  440

seq1  ATAAGAAATGTGGGACTACAATTCAGTTTTAAAGGCAAGAATAGGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATGTGGGACTACAATTCAGTTTTAAAGGCAAGAATAGGCCTCT  490

seq1  CTTAAAATTTTTAAACAGTTCATGTTGTGGCAGGGTTTATAAGACCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTTTTAAACAGTTCATGTTGTGGCAGGGTTTATAAGACCATAT  540

seq1  TATTGATACTTTGGGGACATTTTCATTAAGGGTATTGATATGAGATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATACTTTGGGGACATTTTCATTAAGGGTATTGATATGAGATCTAT  590

seq1  TTTATGTCAGAAAAATGGTTTTGACTCCCATCAAATTTAATAGCATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCAGAAAAATGGTTTTGACTCCCATCAAATTTAATAGCATTGTT  640

seq1  CTAATTTACTATTAGCTTCAAAGTGATGATATTTCGGTGGAGATTTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTACTATTAGCTTCAAAGTGATGATATTTCGGTGGAGATTTGCCA  690

seq1  GTAACCTGCTGTCCTTTTAGGAAATGACTCTGGCTCAGGAATGTAGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGCTGTCCTTTTAGGAAATGACTCTGGCTCAGGAATGTAGTCTG  740

seq1  TGAGCAAGTCACAGGGGACACACCACACTAAGCATGATAGTCTCCGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGTCACAGGGGACACACCACACTAAGCATGATAGTCTCCGCCTT  790

seq1  CAAGGGTATGGAGAACTTCCTGTAGAATATTTGCTTTGTTCATATCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTATGGAGAACTTCCTGTAGAATATTTGCTTTGTTCATATCACTT  840

seq1  TGACAAGTGAAAAGAAGAAGAAAGGTTATACAAAATGTTTTGTCCTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGAAAAGAAGAAGAAAGGTTATACAAAATGTTTTGTCCTTGAC  890

seq1  CCTATTTAGTAAACAAATAAGGGAAAATGTTGTACTTATCAACAAATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAGTAAACAAATAAGGGAAAATGTTGTACTTATCAACAAATGTC  940

seq1  AGCCTTGAGCTAGGTTTATTTCTCTGCAAAAGTGGTTACTTATTGTCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAGCTAGGTTTATTTCTCTGCAAAAGTGGTTACTTATTGTCTTC  990

seq1  AATACGCATTTATATAATTTGCTTGCCTCATAAAGTTTCTGTTGCTTGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGCATTTATATAATTTGCTTGCCTCATAAAGTTTCTGTTGCTTGAT  1040

seq1  TTGTATAACCTTGAAAAAAACTAAAAGTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TTGTATAACCTTGAAAAAAACTAAAAGTGAATTC  1074


seq1: chr14_110008273_110009448
seq2: B6Ng01-188O21.g_67_1242

seq1  GAATTCAGTTTTAACACTAATTTGAGGAAAACAGAGTAAAGACATTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTAACACTAATTTGAGGAAAACAGAGTAAAGACATTGTTC  50

seq1  CTATGAAGTAAACATTGGGAATCAAAGGAAACAAGATAAAATTCAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGTAAACATTGGGAATCAAAGGAAACAAGATAAAATTCAAACAT  100

seq1  TTTCCATGGGTAGGTAAATGAATGATATGATCCACTTTTTGATATAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGGGTAGGTAAATGAATGATATGATCCACTTTTTGATATAGACG  150

seq1  TTACAAACTTTTTTTATTCATCTTAAACAATGGTACAATTAATTTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACTTTTTTTATTCATCTTAAACAATGGTACAATTAATTTTCTTC  200

seq1  ATGCAAATATTTTATTACAAGTGTGCACACACTCTTTACTTATAATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATATTTTATTACAAGTGTGCACACACTCTTTACTTATAATGTAA  250

seq1  TGACCTTTGTCCCAAGTCCTAATGCACTAAATTAAAGATGCATATGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGTCCCAAGTCCTAATGCACTAAATTAAAGATGCATATGGTCA  300

seq1  CCGCTGTGGTCGTAAAGTGGATGATTTTCTCATCCTTCAGCTTCAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTGGTCGTAAAGTGGATGATTTTCTCATCCTTCAGCTTCAATCAT  350

seq1  TGCAATCTTTGTGTCTGTTATAAATGAACAAACACACGCACTGATTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCTTTGTGTCTGTTATAAATGAACAAACACACGCACTGATTTGGC  400

seq1  AGCTGGAGAGATTACCTAGAACCTTTTTTTTTTTTTTGTAAGCAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGATTACCTAGAACCTTTTTTTTTTTTTTGTAAGCAGAAAAT  450

seq1  CTATTTTGAAGAATGAAGACTACAATGTTTTTGAATGTCGGCTTTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGAAGAATGAAGACTACAATGTTTTTGAATGTCGGCTTTGTTTC  500

seq1  ATTTATTTAATTTTATTTTTCGCTTTTTGAGATTACTTGACTAGTAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTAATTTTATTTTTCGCTTTTTGAGATTACTTGACTAGTAACTA  550

seq1  CAACAATGACACCAGGGGAAAGATCGTTTAAATGACTCTGCATGATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGACACCAGGGGAAAGATCGTTTAAATGACTCTGCATGATTGCT  600

seq1  TTCCCAAACCAAAAGGAGTAGAAAATGAAAACACTTTAAAATGAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACCAAAAGGAGTAGAAAATGAAAACACTTTAAAATGAAATATC  650

seq1  TCAAATAAACATTTCATTTAGGATAAAACTGAAGCTGCATACATACCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAACATTTCATTTAGGATAAAACTGAAGCTGCATACATACCACC  700

seq1  CTATTAAATATTGAAAGAACATTTACTGAAGAGCTGAAGGACTCATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAATATTGAAAGAACATTTACTGAAGAGCTGAAGGACTCATTTGC  750

seq1  AAGAGAATAAACGTAATCGAGCAAGTACGCTGCTGAGAGTAAATATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAAACGTAATCGAGCAAGTACGCTGCTGAGAGTAAATATGTAA  800

seq1  AACCTCGGTCGAACAGCATGCAATTAGCGCGAATTCATCCTGGAAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCGGTCGAACAGCATGCAATTAGCGCGAATTCATCCTGGAAAACAG  850

seq1  AAAACGATGATGAGATTGGGATTTTGGTAAAATCTGTACTTGCATAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGATGATGAGATTGGGATTTTGGTAAAATCTGTACTTGCATAACAG  900

seq1  ATTGTCTTACTTATCATCGAACATGAGCCTAGATGTACAT-GGATACTCT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTGTCTTACTTATCATCGAACATGAGCCTAGATGTACATGGGATACTCT  950

seq1  TCGGTGACCTG-AAAATATCAAACAGAAAGTTAAGAAT-GTGTAC-ATCA  996
      ||||||||||| |||||||||||||||||| ||||||| |||||| ||||
seq2  TCGGTGACCTGAAAAATATCAAACAGAAAGGTAAGAATGGTGTACAATCA  1000

seq1  GGGAAAGTCAGTAGTATA-TTTTCTCAGTTTTATGTCTTGAGTTAGTAAC  1045
      |||||||||||||||||| ||||||||| |||||||||||   |||||  
seq2  GGGAAAGTCAGTAGTATATTTTTCTCAGGTTTATGTCTTGGAGTAGTA--  1048

seq1  TTACTTTATTACTTTAAAATATACTTACTTATTTTCAATTGTGTGTGCAC  1095
       |||||   ||||||||||||||||||| || |||||   ||| ||||||
seq2  CTACTT--ATACTTTAAAATATACTTACCTAATTTCATGGGTGGGTGCAC  1096

seq1  ACGCATGCACACACACGCACACACTT-ACAT-ACATGTG--TGAGTGCAT  1141
      |||||||  ||||||||||||||||| |||| ||||| |   ||||||||
seq2  ACGCATG--CACACACGCACACACTTAACATAACATGGGGTGGAGTGCAT  1144

seq1  GCCTGGCAT-GCCTGTCTATGCACAGCATGAGTGAG  1176
      ||   |||| |||||||||||  |||||||| ||||
seq2  GC--TGCATGGCCTGTCTATG--CAGCATGACTGAG  1176


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