BAC Information

Click to search

BAC

Clone NameB6Ng01-189I07
Chromosome14 (Build37)
Map Location 24,400,545 - 24,582,898
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189I07.bB6Ng01-189I07.g
ACCGA013521GA013522
length1,1661,065
definitionB6Ng01-189I07.b B6Ng01-189I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,400,545 - 24,401,709)(24,581,842 - 24,582,898)
sequence
gaattcattccttgaagacattcatttcaggaagttatttccaatttggc
atataacagccatgcaagtcgatgaggatttagaatccctgctccctacg
gaggacatcttatttaaagcacatccctgacaaagcaatatcaaggggac
acaactggaaatctcttcaagaggtgtaatttctccaggagcagatttag
caagtacagcagctaccagaacagcaatctgcttcctgaaattcatctaa
actttcaccagtctgctttgctgggactgccttcattcaaagtccaacca
tggagacagagcttagcaaaggacttatttatctcgccacactttagcaa
ctttaatcatactttagtctcaatgctattactaatgttcacagtatcaa
tgaattctctctctctctctctttctctctctctctctctctccctctct
ctctctctctttccctctcaaaaaattcaaacaaagggtgtggccctatg
ttttggtcccttcaagcatctacatcaaaatacctttactggataattta
taacaacatagatgtattgctcacaaatctggagggtgaagtgtccttgg
gtcaaggtaccaacatatgcagtaatactattctgggtgccccattgtca
tgacctaatcaccatctagatgctactccttctaacgatgcaggtttagg
gtgaagcttctacatgtgaatttggcgaacactaatatttagatcaaaag
agcacacatctctaatgccattgcaaatcagaccaacagtaatgacatta
actatttttttttattaagaatctggaaatgtatttaaaatggaccttct
tactctacaaggccaactgcaaagagaaaggatctctgaaaagccagctt
agtcatagaactagaattaatttaggctttaaatagtgactgagttttct
atttttcttcctcattttttctcaactgggaccatgtggaacactctgtt
agaaggtccctctggctttgtcaagtcactggaacagggagggctgcatc
tcacagtcagttggttggatggtacctcttttgggtgtaacctataacag
tgggtgggattagcatttggagcagcagaccatgaaattacaggaggact
tggaacttggaggtgg
gaattccagggagtagatatttcaacaatggctgctgtgtcagaattcca
gattgatgacttctttgcacaattggtcggaagatcaaggaaccggaagt
gccaggcaggttaatggagagggctgaggaagctgaccttgtcacttgca
gaaaaagactttttaagaaaataggctatttttgcctctcactgaaaata
aggttttgtgttgtttatctcaaggtctgagggcgatggtgttcttggga
atttgtccccattgagaggttgtttaagtttggtaagcatcccatctctt
ctgcactggcaggtagattgtgagcattaaaagggctgagtgtgccccct
tgctacttcagcttgctgagtacaatggtttggcctgtagggcaatggag
gctatttctcttcatactgccccctttgtaggtgagcagctggtttccgg
agagcaagaggtccattttaccattgcatgcctttttatgagctaaccat
tggacaggatccttgggtaagcttgcacagacaaaatggatttaaatata
taaataaaatgaccaagacatcctccaagtcttgtttcatgggctacaca
gccaggtcagagacagctctgtagaacttcctacacttattgattaagag
cctgctcttttccaggcattaattacactatcatcccatgtttcccaata
gtgctctcttacacagatgaggcaactgaggctcacagtggtgacacctg
gtgcccaaaggaatgaacatgcagacagaaaataaacccaagatttgatt
gcaagtattcccatcccattgtttccttgtttaagtccatccctgctttc
cttagtgtgtgtggacatggggtagtgtaagtgactcattcttccccagt
atatgtctttaatcttgagggtgctgtgggaaagttcacagttggccttc
tggcccgtcaggacctatctctctttcaatggtgctgggtcagtatagcc
ttcccttccccagcttgctagaaactgaagtgaaaataaatggtagacaa
agggccttcaaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24400545_24401709
seq2: B6Ng01-189I07.b_43_1208

seq1  GAATTCATTCCTTGAAGACATTCATTTCAGGAAGTTATTTCCAATTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTTGAAGACATTCATTTCAGGAAGTTATTTCCAATTTGGC  50

seq1  ATATAACAGCCATGCAAGTCGATGAGGATTTAGAATCCCTGCTCCCTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAGCCATGCAAGTCGATGAGGATTTAGAATCCCTGCTCCCTACG  100

seq1  GAGGACATCTTATTTAAAGCACATCCCTGACAAAGCAATATCAAGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATCTTATTTAAAGCACATCCCTGACAAAGCAATATCAAGGGGAC  150

seq1  ACAACTGGAAATCTCTTCAAGAGGTGTAATTTCTCCAGGAGCAGATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGAAATCTCTTCAAGAGGTGTAATTTCTCCAGGAGCAGATTTAG  200

seq1  CAAGTACAGCAGCTACCAGAACAGCAATCTGCTTCCTGAAATTCATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAGCAGCTACCAGAACAGCAATCTGCTTCCTGAAATTCATCTAA  250

seq1  ACTTTCACCAGTCTGCTTTGCTGGGACTGCCTTCATTCAAAGTCCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACCAGTCTGCTTTGCTGGGACTGCCTTCATTCAAAGTCCAACCA  300

seq1  TGGAGACAGAGCTTAGCAAAGGACTTATTTATCTCGCCACACTTTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGAGCTTAGCAAAGGACTTATTTATCTCGCCACACTTTAGCAA  350

seq1  CTTTAATCATACTTTAGTCTCAATGCTATTACTAATGTTCACAGTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCATACTTTAGTCTCAATGCTATTACTAATGTTCACAGTATCAA  400

seq1  TGAATTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCCTCTCT  450

seq1  CTCTCTCTCTTTCCCTCTCAAAAAATTCAAACAAAGGGTGTGGCCCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTCCCTCTCAAAAAATTCAAACAAAGGGTGTGGCCCTATG  500

seq1  TTTTGGTCCCTTCAAGCATCTACATCAAAATACCTTTACTGGATAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCCCTTCAAGCATCTACATCAAAATACCTTTACTGGATAATTTA  550

seq1  TAACAACATAGATGTATTGCTCACAAATCTGGAGGGTGAAGTGTCCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACATAGATGTATTGCTCACAAATCTGGAGGGTGAAGTGTCCTTGG  600

seq1  GTCAAGGTACCAACATATGCAGTAATACTATTCTGGGTGCCCCATTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTACCAACATATGCAGTAATACTATTCTGGGTGCCCCATTGTCA  650

seq1  TGACCTAATCACCATCTAGATGCTACTCCTTCTAACGATGCAGGTTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAATCACCATCTAGATGCTACTCCTTCTAACGATGCAGGTTTAGG  700

seq1  GTGAAGCTTCTACATGTGAATTTGGCGAACACTAATATTTAGATCAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTTCTACATGTGAATTTGGCGAACACTAATATTTAGATCAAAAG  750

seq1  AGCACACATCTCTAATGCCATTGCAAATCAGACCAACAGTAATGACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATCTCTAATGCCATTGCAAATCAGACCAACAGTAATGACATTA  800

seq1  ACTATTTTTTTTTATTAAGAATCTGGAAATGTATTTAAAATGGACCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTTTTTATTAAGAATCTGGAAATGTATTTAAAATGGACCTTCT  850

seq1  TACTCTACAAGGCCAACTGCAAAGAG-AAGGATCTCTGAAAAGCCAGCTT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACTCTACAAGGCCAACTGCAAAGAGAAAGGATCTCTGAAAAGCCAGCTT  900

seq1  AGTCATAGAACTAGAATTAATTTAGGCTTTAAATAGTGACTGAGTTTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGAACTAGAATTAATTTAGGCTTTAAATAGTGACTGAGTTTTCT  950

seq1  ATTTTTCTTCCTCATTTTTTCTCAACTGGGACCATGTGGAACACTCTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCCTCATTTTTTCTCAACTGGGACCATGTGGAACACTCTGTT  1000

seq1  AGAAGGTCCCTCTGGCTTTGTCAGGTCACTGGAACAAGGGAAGGCTGCAT  1049
      ||||||||||||||||||||||| ||||||||||| ||||| ||||||||
seq2  AGAAGGTCCCTCTGGCTTTGTCAAGTCACTGGAAC-AGGGAGGGCTGCAT  1049

seq1  CTCACAGTCAGTTTGGTTGGATGGTACTCCTTTTGTGTGTAA-CTATAAC  1098
      ||||||||||| |||||||||||||||  |||||| |||||| |||||||
seq2  CTCACAGTCAG-TTGGTTGGATGGTACCTCTTTTGGGTGTAACCTATAAC  1098

seq1  AGTTGGGTGCGATTAGCATTT-GAGCAGCAG--CATAGAATTACAGGAGG  1145
      || |||||| ||||||||||| |||||||||  |||  ||||||||||||
seq2  AG-TGGGTGGGATTAGCATTTGGAGCAGCAGACCATGAAATTACAGGAGG  1147

seq1  AACCTGGACTTTGGAGGTGG  1165
       || ||||  ||||||||||
seq2  -ACTTGGAACTTGGAGGTGG  1166

seq1: chr14_24581842_24582898
seq2: B6Ng01-189I07.g_65_1129 (reverse)

seq1  CTCCCTGAAGGCCCTTTGTCT-CCATT--ATTTCAC-TCAGTTCCTAGCA  46
      |||| |||||||||||||||| |||||   |||||| |||||| ||||||
seq2  CTCCTTGAAGGCCCTTTGTCTACCATTTATTTTCACTTCAGTTTCTAGCA  50

seq1  AGCTGGGGAAGGGAAGGCTATACTGACACAGCACCA-TGAAAGAGAAGAT  95
      ||||||||||||||||||||||||||| |||||||| |||||||| ||||
seq2  AGCTGGGGAAGGGAAGGCTATACTGACCCAGCACCATTGAAAGAG-AGAT  99

seq1  AGGTCCTGACGGGCCAGAA-GCCAACTGTG-ACTTTCCCACAGCACCCTC  143
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  AGGTCCTGACGGGCCAGAAGGCCAACTGTGAACTTTCCCACAGCACCCTC  149

seq1  AAGATTAAAGACATATACTGGGGGAGAATGAGTCACTTACACTACCCCAT  193
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGATTAAAGACATATACTGGGGAAGAATGAGTCACTTACACTACCCCAT  199

seq1  GTCCACACACACTAAGG-AAGCAGGGATGGACTTAAACAAGG-AACAATG  241
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  GTCCACACACACTAAGGAAAGCAGGGATGGACTTAAACAAGGAAACAATG  249

seq1  GGATGGGAATACTTGCAATCAAATCTTGGGTTTATTTTCTGTCTGCATGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAATACTTGCAATCAAATCTTGGGTTTATTTTCTGTCTGCATGT  299

seq1  TCATTCCTTTGGGCACCAGGTGTCACCACTGTGAGCCTCAGTTGCCTCAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTTGGGCACCAGGTGTCACCACTGTGAGCCTCAGTTGCCTCAT  349

seq1  CTGTGTAAGAGAGCACTATTGGGAAACATGGGATGATAGTGTAATTAATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGAGAGCACTATTGGGAAACATGGGATGATAGTGTAATTAATG  399

seq1  CCTGGAAAAGAGCAGGCTCTTAATCAATAAGTGTAGGAAGTTCTACAGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAAGAGCAGGCTCTTAATCAATAAGTGTAGGAAGTTCTACAGAG  449

seq1  CTGTCTCTGACCTGGCTGTGTAGCCCATGAAACAAGACTTGGAGGATGTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGACCTGGCTGTGTAGCCCATGAAACAAGACTTGGAGGATGTC  499

seq1  TTGGTCATTTTATTTATATATTTAAATCCATTTTGTCTGTGCAAGCTTAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATTTTATTTATATATTTAAATCCATTTTGTCTGTGCAAGCTTAC  549

seq1  CCAAGGATCCTGTCCAATGGTTAGCTCATAAAAAGGCATGCAATGGTAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATCCTGTCCAATGGTTAGCTCATAAAAAGGCATGCAATGGTAAA  599

seq1  ATGGACCTCTTGCTCTCCGGAAACCAGCTGCTCACCTACAAAGGGGGCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTCTTGCTCTCCGGAAACCAGCTGCTCACCTACAAAGGGGGCAG  649

seq1  TATGAAGAGAAATAGCCTCCATTGCCCTACAGGCCAAACCATTGTACTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAGAAATAGCCTCCATTGCCCTACAGGCCAAACCATTGTACTCA  699

seq1  GCAAGCTGAAGTAGCAAGGGGGCACACTCAGCCCTTTTAATGCTCACAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGAAGTAGCAAGGGGGCACACTCAGCCCTTTTAATGCTCACAAT  749

seq1  CTACCTGCCAGTGCAGAAGAGATGGGATGCTTACCAAACTTAAACAACCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCCAGTGCAGAAGAGATGGGATGCTTACCAAACTTAAACAACCT  799

seq1  CTCAATGGGGACAAATTCCCAAGAACACCATCGCCCTCAGACCTTGAGAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGGGACAAATTCCCAAGAACACCATCGCCCTCAGACCTTGAGAT  849

seq1  AAACAACACAAAACCTTATTTTCAGTGAGAGGCAAAAATAGCCTATTTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACAAAACCTTATTTTCAGTGAGAGGCAAAAATAGCCTATTTTC  899

seq1  TTAAAAAGTCTTTTTCTGCAAGTGACAAGGTCAGCTTCCTCAGCCCTCTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTCTTTTTCTGCAAGTGACAAGGTCAGCTTCCTCAGCCCTCTC  949

seq1  CATTAACCTGCCTGGCACTTCCGGTTCCTTGATCTTCCGACCAATTGTGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCTGCCTGGCACTTCCGGTTCCTTGATCTTCCGACCAATTGTGC  999

seq1  AAAGAAGTCATCAATCTGGAATTCTGACACAGCAGCCATTGTTGAAATAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTCATCAATCTGGAATTCTGACACAGCAGCCATTGTTGAAATAT  1049

seq1  CTACTCCCTGGAATTC  1057
      ||||||||||||||||
seq2  CTACTCCCTGGAATTC  1065