BAC Information

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BAC

Clone NameB6Ng01-189K10
Chromosome14 (Build37)
Map Location 118,736,659 - 118,868,231
singlet/doubletdoublet
Overlap geneLOC435422
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814
Downstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189K10.bB6Ng01-189K10.g
ACCGA013615GA013616
length3891,083
definitionB6Ng01-189K10.b B6Ng01-189K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,867,837 - 118,868,231)(118,736,659 - 118,737,718)
sequence
attgatgagtgttgtttgaatgttttacctgccttgtattgtttgaggca
gggtctcattgtgcagccctagatggcttgggaccttctatttagaccag
actgacttagaactcacagagacctgttggcctccactttgtgagttctg
ggattaaaggtgtgtaccatgcctggctgtcttgtatgttttaaaaacac
attttagagaaagatatgtttgtgtagaacttctttttaagaacttgctg
tttaaaaacagagaagagatggaagaaaaaatcttgtcccaagcagattc
acacactttgggtttgggcactgcctctggatccagaactcaggaacaca
tggttagaaagagagagagaggagagaggagagggaggg
gaattccaggccacagagagaccctgtctcaaagaaacagtacattgagg
aggtgatggagggagggagtaattgaaatacattagaaacatgtaacgaa
ctttcaagaggcaaatttatttaaaaataatagaaccaaacttagaagga
aagaagtaatagaggtggtgaatctgactgaagtgcactatacacatata
tgtagagaaatgttacaataaaataccttactttacacagttaacatatg
ctaataaaaaaattcagagaggtcccaaaaagttgatagatggcacctga
gtaatgatatttgatattgttcactggcatacacacacacacacacacac
acacacacatatagatacaccacagacacacacatatatacacataaaca
cacatacatatacacacaaagacagagacacacagacatacgcatacata
catatatacatacatacatacatacatacatacatacaaagacagactca
cacacacatatacacaaaggcacacatacacagagacacacagacacaaa
cacatacatggacagacagacagacagacaggccgacaaacacacttaca
acaggagaccagatataagccacagtccaataggacaagctgcaaagcac
tgtgtgtaatcaagattcaattggtaaagctgtcaggcctggggccttct
ccctgagactctgatgtgttttagcattaaatcacctgactgccaaccct
cctgcctatcacagggcagcaaagacagaatccaggaaacagtgctcttc
ttgacagaacaccccacgccctgcaatcccactgtggagaagggaggggc
acaggtcggcccaagaaccctgcaatccaaaggtgaagagatggggaagc
cagaaggcctcagtgggtttagctgggcaacgaaacaatggtagagattc
ttgtggaaccatgaggccaagtttgcctcatcctgggggttcttaagaag
tttttattttacatatttggtcatggtggcttggtttgctggctctaaca
ggaaggttggtggctggccggcagacagcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118867837_118868231
seq2: B6Ng01-189K10.b_42_436 (reverse)

seq1  CCCTCCCTCTCCTCTCTCCTCTCTCTCTCTTTCTAACCATGTGTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCTCCTCTCTCCTCTCTCTCTCTTTCTAACCATGTGTTCCTGA  50

seq1  GTTCTGGATCCAGAGGCAGTGCCCAAACCCAAAGTGTGTGAATCTGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGATCCAGAGGCAGTGCCCAAACCCAAAGTGTGTGAATCTGCTTG  100

seq1  GGACAAGATTTTTTCTTCCATCTCTTCTCTGTTTTTAAACAGCAAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGATTTTTTCTTCCATCTCTTCTCTGTTTTTAAACAGCAAGTTCT  150

seq1  TAAAAAGAAGTTCTACACAAACATATCTTTCTCTAAAATGTGTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAGTTCTACACAAACATATCTTTCTCTAAAATGTGTTTTTAAA  200

seq1  ACATACAAGACAGCCAGGCATGGTACACACCTTTAATCCCAGAACTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAGACAGCCAGGCATGGTACACACCTTTAATCCCAGAACTCACA  250

seq1  AAGTGGAGGCCAACAGGTCTCTGTGAGTTCTAAGTCAGTCTGGTCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGCCAACAGGTCTCTGTGAGTTCTAAGTCAGTCTGGTCTAAAT  300

seq1  AGAAGGTCCCAAGCCATCTAGGGCTGCACAATGAGACCCTGCCTCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTCCCAAGCCATCTAGGGCTGCACAATGAGACCCTGCCTCAAACA  350

seq1  ATACAAGGCAGGTAAAACATTCAAACAACACTCATCAATGAATTC  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGCAGGTAAAACATTCAAACAACACTCATCAATGAATTC  395

seq1: chr14_118736659_118737718
seq2: B6Ng01-189K10.g_62_1144

seq1  GAATTCCAGGCCACAGAGAGACCCTGTCTCAAAGAAACAGTACATTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCACAGAGAGACCCTGTCTCAAAGAAACAGTACATTGAGG  50

seq1  AGGTGATGGAGGGAGGGAGTAATTGAAATACATTAGAAACATGTAACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGGAGGGAGGGAGTAATTGAAATACATTAGAAACATGTAACGAA  100

seq1  CTTTCAAGAGGCAAATTTATTTAAAAATAATAGAACCAAACTTAGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGAGGCAAATTTATTTAAAAATAATAGAACCAAACTTAGAAGGA  150

seq1  AAGAAGTAATAGAGGTGGTGAATCTGACTGAAGTGCACTATACACATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAATAGAGGTGGTGAATCTGACTGAAGTGCACTATACACATATA  200

seq1  TGTAGAGAAATGTTACAATAAAATACCTTACTTTACACAGTTAACATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAAATGTTACAATAAAATACCTTACTTTACACAGTTAACATATG  250

seq1  CTAATAAAAAAATTCAGAGAGGTCCCAAAAAGTTGATAGATGGCACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAAATTCAGAGAGGTCCCAAAAAGTTGATAGATGGCACCTGA  300

seq1  GTAATGATATTTGATATTGTTCACTGGCATACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATATTTGATATTGTTCACTGGCATACACACACACACACACACAC  350

seq1  ACACACACATATAGATACACCACAGACACACACATATATACACATAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATAGATACACCACAGACACACACATATATACACATAAACA  400

seq1  CACATACATATACACACAAAGACAGAGACACACAGACATACGCATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATATACACACAAAGACAGAGACACACAGACATACGCATACATA  450

seq1  CATATATACATACATACATACATACATACATACATACAAAGACAGACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACATACATACATACATACATACATACATACAAAGACAGACTCA  500

seq1  CACACACATATACACAAAGGCACACATACACAGAGACACACAGACACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATATACACAAAGGCACACATACACAGAGACACACAGACACAAA  550

seq1  CACATACATGGACAGACAGACAGACAGACAGGCCGACAAACACACTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATGGACAGACAGACAGACAGACAGGCCGACAAACACACTTACA  600

seq1  ACAGGAGACCAGATATAAGCCACAGTCCAATAGGACAAGCTGCAAAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGACCAGATATAAGCCACAGTCCAATAGGACAAGCTGCAAAGCAC  650

seq1  TGTGTGTAATCAAGATTCAATTGGTAAAGCTGTCAGGCCTGGGGCCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAATCAAGATTCAATTGGTAAAGCTGTCAGGCCTGGGGCCTTCT  700

seq1  CCCTGAGACTCTGATGTGTTTTAGCATTAAATCACCTGACTGCCAACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACTCTGATGTGTTTTAGCATTAAATCACCTGACTGCCAACCCT  750

seq1  CCTGCCTATCACAGGGCAGCAAAGACAGAAT-CAGGAAACAGTGCTCTTC  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTGCCTATCACAGGGCAGCAAAGACAGAATCCAGGAAACAGTGCTCTTC  800

seq1  TTGACAGAACACCCCACGCCCTGCAATCCCACTGTGGAGAAGGGAAGGGG  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGACAGAACACCCCACGCCCTGCAATCCCACTGTGGAGAAGGG-AGGGG  849

seq1  CACAGGTCGGCCCAAGAACCCTGCAGTCCAAAGGTGAAGAGATGGGGAAG  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACAGGTCGGCCCAAGAACCCTGCAATCCAAAGGTGAAGAGATGGGGAAG  899

seq1  CCAG-AGGCCTCAGT-GGTTTAGCT-GGCAACGAA--CAGGGTAGAGAT-  943
      |||| |||||||||| ||||||||| |||||||||   | ||||||||| 
seq2  CCAGAAGGCCTCAGTGGGTTTAGCTGGGCAACGAAACAATGGTAGAGATT  949

seq1  -CTGT-GAACCA-GAGGCCCAGTT--GCTCATCCT-GGGGTTC-TAAGAA  986
        ||| |||||| |||||| ||||   |||||||| ||||||| ||||||
seq2  CTTGTGGAACCATGAGGCCAAGTTTGCCTCATCCTGGGGGTTCTTAAGAA  999

seq1  GTTTT--ATTTACATATTT-GTCATG--TGCTT-GTTTGCTTGCTCT-AC  1029
      |||||   ||||||||||| ||||||   |||| ||||||| ||||| ||
seq2  GTTTTTATTTTACATATTTGGTCATGGTGGCTTGGTTTGCTGGCTCTAAC  1049

seq1  AGGAA-GTTGGT-GCT-GCCGGCAGACAGCATAA  1060
      ||||| |||||| ||| |||||||||||||||||
seq2  AGGAAGGTTGGTGGCTGGCCGGCAGACAGCATAA  1083