BAC Information

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BAC

Clone NameB6Ng01-189N02
Chromosome14 (Build37)
Map Location 103,348,404 - 103,462,686
singlet/doubletdoublet
Overlap geneKctd12, LOC668699, Irg1
Upstream geneLOC545567, LOC669278
Downstream geneCln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189N02.bB6Ng01-189N02.g
ACCGA013738GA013739
length940724
definitionB6Ng01-189N02.b B6Ng01-189N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,348,404 - 103,349,338)(103,462,130 - 103,462,686)
sequence
gaattccagagcctaggaaactgaggcaggagacaagggatgagtttgag
gccatcctgtagacaatagagagtagcaagccaacctgggctacagaatg
aattcctgtcagagagagatggggaggaagagagagagagacagagacag
agacatcaactctgaatttaaatgttcaaatcctacaaatttcaaacttt
ctactcttcacaaattccataaacctatgccttaaaataaatgcctgtat
gtaagtggcaggtgatagagatacaacacatagtgtgtgacattatgcaa
tagttatgtaaaacactaaaatatttataaatagattatcctgtatgtaa
tacttgcttgcttctccgaaaatgatgacacagatctgtagtagggggtc
cagtttagttagtagccaggctcccccaaaaaaatggaaagccagggcca
agctcatggggcccaccatcattcagattcccccttacaaatgaagacca
catcagcaagtgtccatggctactcctcttagaacttctcttcatcaaca
tagttctgttacttgttttgagtccctaccattcccgagtagatagaggg
tgagtcatcctttatttcttctattctccccctgtgtctgcttggtcaca
gtccctgcttttcatccttcccctctttgcttcatcctgactctgagaaa
cacagcaccactctgtgacttttccccaggcaacttttcaagacgtaagg
tttctgtcctccttattgcagtgtatcacacttactgcagaagacaattg
agtttgacaaagctcatcattccagaccttgcacacacagatctgaacta
aagagctgggaattgggtatgggagtcacagaggccaggcttcaaccatc
agagactgtctcctcgtggggttaggggaaggtggggggt
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacgatgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttattgattcttgatcttcagcacaagccattgctgttc
tattcaggaatttttcccctgtacccatatcttcaaggcttttccctact
ttctcctctataagtttcaggcgtctagcttctttctccaagactatgtc
ttcaaggcacacatttgtaaatttcattgtattaatgtttccacaaacaa
gtgtacaaacacgcagacacgtgtgaccctgttttttattgctctgtgta
catgcctaactcctaattctattgaaaacactcatcctcatatatgaggt
cctcatcagagaaacatctccttgcaacagatggcgatcattaaggaaaa
ccacaactgatcaaagtgactgtgtggagcccagtcccatctgacacatc
cacaatacaactactgcacctcagggatcaccatggaagacggggtggga
caattcctaggaatgacatggaaaccacaccctggatgtcttctttcttc
ctttccttccttccttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103348404_103349338
seq2: B6Ng01-189N02.b_32_971

seq1  GAATTCCAGAGCCTAGGAAACTGAGGCAGGAGACAAGGGATGAGTTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCTAGGAAACTGAGGCAGGAGACAAGGGATGAGTTTGAG  50

seq1  GCCATCCTGTAGACAATAGAGAGTAGCAAGCCAACCTGGGCTACAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGTAGACAATAGAGAGTAGCAAGCCAACCTGGGCTACAGAATG  100

seq1  AATTCCTGTCAGAGAGAGATGGGGAGGAAGAGAGAGAGAGACAGAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGTCAGAGAGAGATGGGGAGGAAGAGAGAGAGAGACAGAGACAG  150

seq1  AGACATCAACTCTGAATTTAAATGTTCAAATCCTACAAATTTCAAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAACTCTGAATTTAAATGTTCAAATCCTACAAATTTCAAACTTT  200

seq1  CTACTCTTCACAAATTCCATAAACCTATGCCTTAAAATAAATGCCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTTCACAAATTCCATAAACCTATGCCTTAAAATAAATGCCTGTAT  250

seq1  GTAAGTGGCAGGTGATAGAGATACAACACATAGTGTGTGACATTATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGGCAGGTGATAGAGATACAACACATAGTGTGTGACATTATGCAA  300

seq1  TAGTTATGTAAAACACTAAAATATTTATAAATAGATTATCCTGTATGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGTAAAACACTAAAATATTTATAAATAGATTATCCTGTATGTAA  350

seq1  TACTTGCTTGCTTCTCCGAAAATGATGACACAGATCTGTAGTAGGGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTTGCTTCTCCGAAAATGATGACACAGATCTGTAGTAGGGGGTC  400

seq1  CAGTTTAGTTAGTAGCCAGGCTCCCCCAAAAAAATGGAAAGCCAGGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGTTAGTAGCCAGGCTCCCCCAAAAAAATGGAAAGCCAGGGCCA  450

seq1  AGCTCATGGGGCCCACCATCATTCAGATTCCCCCTTACAAATGAAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGGGGCCCACCATCATTCAGATTCCCCCTTACAAATGAAGACCA  500

seq1  CATCAGCAAGTGTCCATGGCTACTCCTCTTAGAACTTCTCTTCATCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAAGTGTCCATGGCTACTCCTCTTAGAACTTCTCTTCATCAACA  550

seq1  TAGTTCTGTTACTTGTTTTGAGTCCCTACCATTCCCGAGTAGATAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGTTACTTGTTTTGAGTCCCTACCATTCCCGAGTAGATAGAGGG  600

seq1  TGAGTCATCCTTTATTTCTTCTATTCTCCCCCTGTGTCTGCTTGGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATCCTTTATTTCTTCTATTCTCCCCCTGTGTCTGCTTGGTCACA  650

seq1  GTCCCTGCTTTTCATCCTTCCCCTCTTTGCTTCATCCTGACTCTGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCTTTTCATCCTTCCCCTCTTTGCTTCATCCTGACTCTGAGAAA  700

seq1  CACAGCACCACTCTGTGACTTTTCCCCAGGCAACTTTTCAAGACGTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACCACTCTGTGACTTTTCCCCAGGCAACTTTTCAAGACGTAAGG  750

seq1  TTTCTGTCCTCCTTATTGCAGTGTATCACACTTACTGCAGAAGACAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCCTCCTTATTGCAGTGTATCACACTTACTGCAGAAGACAATTG  800

seq1  AG-TTGACAAAGCTCATCATTCCAGACCTTGCACACACAGATCTGAACTA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGACAAAGCTCATCATTCCAGACCTTGCACACACAGATCTGAACTA  850

seq1  AAGAGCT-GGAATTGGGTATGGGAGTCACAGAGGCCAGGC-TCAACCATC  897
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAGCTGGGAATTGGGTATGGGAGTCACAGAGGCCAGGCTTCAACCATC  900

seq1  AGAGACTGTCTCCTCGTGGGG-TAGGGG-AGGTGGGGGTT  935
      ||||||||||||||||||||| |||||| ||||||||| |
seq2  AGAGACTGTCTCCTCGTGGGGTTAGGGGAAGGTGGGGGGT  940

seq1: chr14_103462130_103462686
seq2: B6Ng01-189N02.g_237_794 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGG-AAGGAAGAAAGAAGACATCCAGGGTGTGG  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAAGGAAGAAAGAAGACATCCAGGGTGTGG  50

seq1  TTTCCATGTCATTCCTAGGAATTGTCCCACCCCGTCTTCCATGGTGATCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGTCATTCCTAGGAATTGTCCCACCCCGTCTTCCATGGTGATCC  100

seq1  CTGAGGTGCAGTAGTTGTATTGTGGATGTGTCAGATGGGACTGGGCTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGCAGTAGTTGTATTGTGGATGTGTCAGATGGGACTGGGCTCCA  150

seq1  CACAGTCACTTTGATCAGTTGTGGTTTTCCTTAATGATCGCCATCTGTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACTTTGATCAGTTGTGGTTTTCCTTAATGATCGCCATCTGTTG  200

seq1  CAAGGAGATGTTTCTCTGATGAGGACCTCATATATGAGGATGAGTGTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGATGTTTCTCTGATGAGGACCTCATATATGAGGATGAGTGTTTT  250

seq1  CAATAGAATTAGGAGTTAGGCATGTACACAGAGCAATAAAAAACAGGGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAATTAGGAGTTAGGCATGTACACAGAGCAATAAAAAACAGGGTC  300

seq1  ACACGTGTCTGCGTGTTTGTACACTTGTTTGTGGAAACATTAATACAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTCTGCGTGTTTGTACACTTGTTTGTGGAAACATTAATACAATG  350

seq1  AAATTTACAAATGTGTGCCTTGAAGACATAGTCTTGGAGAAAGAAGCTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACAAATGTGTGCCTTGAAGACATAGTCTTGGAGAAAGAAGCTAG  400

seq1  ACGCCTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTTGAAGATATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTTGAAGATATGG  450

seq1  GTACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGAAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGAAGAT  500

seq1  CAAGAATCAATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCAATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCA  550

seq1  AAAGACAT  557
      ||||||||
seq2  AAAGACAT  558