BAC Information

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BAC

Clone NameB6Ng01-191D20
Chromosome14 (Build37)18 (Build37)
Map Location 57,378,962 - 57,380,10846,655,197 - 46,655,338
singlet/doubletsingletsinglet
Overlap genePspc1
Upstream geneCideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik
Downstream geneLOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191D20.bB6Ng01-191D20.g
ACCGA014784GA014785
length1,152135
definitionB6Ng01-191D20.b B6Ng01-191D20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,378,962 - 57,380,108)(46,655,197 - 46,655,338)
sequence
gaattcttttattcccgacacagggtacccctggttgtcttggaactacc
tgtatagaccaggctagccttgaactcccaaaggtctgcctacctctgcc
tcctgagtgccaggattaaaggcatgtaccaccactgccttgttctaaaa
gaaatatttgcagagtccagtgagactgttagaaacacagtaaaagatct
ctattttatcctggcagaaagagaatttaccaaaaggtaaattcagagac
gagtcatcaatgttttctactttctaaactcactttatgtagcctaggct
aaccctgagatgattcttcagactctatgtcagatgttgggagtgcaagc
atagggtaccgcatagtaataaacgtgtactattccaggtacagtagtgc
acaccaatacctgagggaagaatcaggggctcaggtttatcctccaggat
ttagccaagttagaggtaagcctgggctacatgaacctcacccatctcaa
aaaatatgtaagtaagtaaataagtaaataaacaccctagaatggttttt
aaagctaaaataccagaacgggggctggagagctatatacttaattctag
cccttgggaagtagaggtaggggaattaggagataaaggtcatccccagc
ctcacagaagttcaatgtcagcttgagttacacgacagggctagaaagat
ggatcagcatttaagagtctgggctgctcttccagaagacttgggttcaa
ttcccagcaccctaatgacagcttggaaccaactgtaactccagccctag
gggattgacagctcctggcctctgaaaagactgcacacacatggctcaca
ttaagtcaaacagctaatatacataaagacaagtaactcaaaagtaaccc
taaaataacaaacacctccaaagaagagaaaaggaaaatatgagcaaaaa
atgaatgtaacaagacacagaagcgtctaggaaatatttaagcagtctat
ccttactgttagctattgcacctctaatactcttctctggctatgagggc
cagcatgcacaactgttacaagactactttgcagacctacattttgtacg
aactcagagatctaatcttgtttaacaaatcctgttcctatcctttttag
at
caggacagccagggctacacagagaaaccctgtctcaagaaaaaaagaga
agaaagagaagaaagagaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaagaaaaagaaagaagaggaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57378962_57380108
seq2: B6Ng01-191D20.b_44_1195

seq1  GAATTCTTTTATTCCCGACACAGGGTACCCCTGGTTGTCTTGGAACTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTCCCGACACAGGGTACCCCTGGTTGTCTTGGAACTACC  50

seq1  TGTATAGACCAGGCTAGCCTTGAACTCCCAAAGGTCTGCCTACCTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGACCAGGCTAGCCTTGAACTCCCAAAGGTCTGCCTACCTCTGCC  100

seq1  TCCTGAGTGCCAGGATTAAAGGCATGTACCACCACTGCCTTGTTCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCCAGGATTAAAGGCATGTACCACCACTGCCTTGTTCTAAAA  150

seq1  GAAATATTTGCAGAGTCCAGTGAGACTGTTAGAAACACAGTAAAAGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTGCAGAGTCCAGTGAGACTGTTAGAAACACAGTAAAAGATCT  200

seq1  CTATTTTATCCTGGCAGAAAGAGAATTTACCAAAAGGTAAATTCAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATCCTGGCAGAAAGAGAATTTACCAAAAGGTAAATTCAGAGAC  250

seq1  GAGTCATCAATGTTTTCTACTTTCTAAACTCACTTTATGTAGCCTAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCAATGTTTTCTACTTTCTAAACTCACTTTATGTAGCCTAGGCT  300

seq1  AACCCTGAGATGATTCTTCAGACTCTATGTCAGATGTTGGGAGTGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAGATGATTCTTCAGACTCTATGTCAGATGTTGGGAGTGCAAGC  350

seq1  ATAGGGTACCGCATAGTAATAAACGTGTACTATTCCAGGTACAGTAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTACCGCATAGTAATAAACGTGTACTATTCCAGGTACAGTAGTGC  400

seq1  ACACCAATACCTGAGGGAAGAATCAGGGGCTCAGGTTTATCCTCCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATACCTGAGGGAAGAATCAGGGGCTCAGGTTTATCCTCCAGGAT  450

seq1  TTAGCCAAGTTAGAGGTAAGCCTGGGCTACATGAACCTCACCCATCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAAGTTAGAGGTAAGCCTGGGCTACATGAACCTCACCCATCTCAA  500

seq1  AAAATATGTAAGTAAGTAAATAAGTAAATAAACACCCTAGAATGGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTAAGTAAGTAAATAAGTAAATAAACACCCTAGAATGGTTTTT  550

seq1  AAAGCTAAAATACCAGAACGGGGGCTGGAGAGCTATATACTTAATTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAATACCAGAACGGGGGCTGGAGAGCTATATACTTAATTCTAG  600

seq1  CCCTTGGGAAGTAGAGGTAGGGGAATTAGGAGATAAAGGTCATCCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGAAGTAGAGGTAGGGGAATTAGGAGATAAAGGTCATCCCCAGC  650

seq1  CTCACAGAAGTTCAATGTCAGCTTGAGTTACACGACAGGGCTAGAAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAAGTTCAATGTCAGCTTGAGTTACACGACAGGGCTAGAAAGAT  700

seq1  GGATCAGCATTTAAGAGTCTGGGCTGCTCTTCCAGAAGACTTGGGTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCATTTAAGAGTCTGGGCTGCTCTTCCAGAAGACTTGGGTTCAA  750

seq1  TTCCCAGCACCCTAATGACAGCTTGGAACCAACTGTAACTCCAGCCCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCACCCTAATGACAGCTTGGAACCAACTGTAACTCCAGCCCTAG  800

seq1  GGGATTGACAGCTCCTGGCCTCTGAAAAGACTGCACACACATGGCTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGACAGCTCCTGGCCTCTGAAAAGACTGCACACACATGGCTCACA  850

seq1  TTAAGTCAAACAGCTAATATACATAAAGACAAGTAACTCAAAAGTAA-CC  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAAGTCAAACAGCTAATATACATAAAGACAAGTAACTCAAAAGTAACCC  900

seq1  TAAAATAAACAAACACCTCCAAAGAAGAGAAAAGGAAAATATGAGCAAAA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAT-AACAAACACCTCCAAAGAAGAGAAAAGGAAAATATGAGCAAAA  949

seq1  AATGAATGTAACAAAGACACAGAAGCGTCTAGGAAATATTTAAGCAGTCT  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTAAC-AAGACACAGAAGCGTCTAGGAAATATTTAAGCAGTCT  998

seq1  AT-CTTACTGTTAGCTA-TGCA-CTCTAATACTC-TCTCTGGCTTATGAG  1045
      || |||||||||||||| |||| ||||||||||| |||||||| ||||||
seq2  ATCCTTACTGTTAGCTATTGCACCTCTAATACTCTTCTCTGGC-TATGAG  1047

seq1  GGGCAGCATGCACACTTGTTACAAAGACATAC-TTGCAGA-CTACATTTG  1093
      || |||||||||||  |||||| ||||| ||| ||||||| |||||||| 
seq2  GGCCAGCATGCACAACTGTTAC-AAGAC-TACTTTGCAGACCTACATTTT  1095

seq1  GTACCGACCCAGAGATCTAA--ATCTGTAACAAAT-CTGTTCCCAATCTT  1140
      ||||  || |||||||||||   | | |||||||| ||||||| |  |||
seq2  GTACGAACTCAGAGATCTAATCTTGTTTAACAAATCCTGTTCCTATCCTT  1145

seq1  TTTAGAT  1147
      |||||||
seq2  TTTAGAT  1152

seq1: chr18_46655197_46655338
seq2: B6Ng01-191D20.g_71_205 (reverse)

seq1  CTTCCTCCTCTTCTTTCTTTTTGTT--TTTGTTTTTAAAGGGGAGAGGGT  48
      |||||||||||||||||||||| ||  ||  ||  |             |
seq2  CTTCCTCCTCTTCTTTCTTTTTCTTCCTTCCTTCCT----------TCCT  40

seq1  AAAATTATGATCCCATGTTGAAGCTTTTTGGTATTTGTT-TGTTTGT--T  95
          |  |  |||    ||    | ||    | ||| || | ||| |  |
seq2  TCCTTCCT--TCCTTCCTTCCTTCCTTCCTCTCTTTCTTCTCTTTCTTCT  88

seq1  TTTGGTTTTTTGAGAAAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  142
       ||  ||| |||||| |||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  135