BAC Information

Click to search

BAC

Clone NameB6Ng01-192M01
Chromosome14 (Build37)
Map Location 98,232,952 - 98,345,031
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192M01.bB6Ng01-192M01.g
ACCGA015908GA015909
length4321,090
definitionB6Ng01-192M01.b B6Ng01-192M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,232,952 - 98,233,388)(98,343,960 - 98,345,031)
sequence
agtaacattcctgtatatgtttcttctgcaccaggaacaaacaattagta
acaaatgaaagagatcattacatcaagtgcccttttagatcaccccaatt
aaaactttagtttagctgtattttaattctaagataccaaattctaattt
tctgctctgattgctcttgttgacttatctttgaaagatgtactctcact
gcaatgtctagagattatttagcaagatgccaatgttggcaccacttaat
gtgttgattggttgtattatcagtagctgtttaaaataaattactattaa
actattattgtccttgtgtgacaagacacaatattttggtgttcttaaat
atgaaataatcattacaaataaacacttgactaatgttaagctctaatat
gtgtgattttattattaaatatcagtttgaaa

gaattccttagcttaggttgttggcattctgtggtgttccttattttcct
aaaacaaatgctgaggtgacgcctggctcagtcagtcaatgcacacattt
agcacaccccaggagggaagctgtgtggtgaacccagtagattttagagc
tcagaaaggcttcacaccctgtggtgccagcacacttctttcactgggaa
gtttgtcattaaaatatagccctcttacagtgacttcaaactagcttgat
ttgaattgtttttagttacaatgcagcacgaggaatattttcagtttgga
aaaaagaaaaaggaagaaagaaagaaaaaaagaaaagaaaagaaaagaat
ccataaggattattttattttgatagatacaatctatccatgtagtatat
ataactacactgtatctgtgtacttatgtgtagctatatatttataaaaa
taatcaaaactcacttatagatgaaaatgtataaaagaaaatctgatgtt
aactttctagcaactgaaatattcaaacaaatagataagagtggctatgc
attaaaagaaaacacatgatgaagcaaagtatagcttattaattatgagg
cattcaaatcatttttcgcattatagaatcatgttccccatgaaaacatt
gtgtattttattattaactcacagcatatgatcttcatttctgcctccct
caatttcgtccccctgggatggaacaacgtagactcacacattttattat
attaattagaaatcactacctaatataattattctggcaagcacatgggt
gagtcctgaaatattatttgacagaatttctctatttaactctggtgtta
aaaagatttgcatgtctaaaaactgccttgattagatattgtttttgacg
actctgcgtggtgtttttccttcgatgcacattaaagcacgaggactttt
agcacgttctgaagtaacatctgcttcggtcttttttgttggcagggttc
atgggtataatttagctcttatattttcagccaattacaattttttgctc
catgggagacaaagcagccatgaagaaaacttaaataatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_98232952_98233388
seq2: B6Ng01-192M01.b_47_484

seq1  GAATTCAGTAACATTCCTGTATATGTTTCTTCTGCACCAGGAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAACATTCCTGTATATGTTTCTTCTGCACCAGGAACAAACAA  50

seq1  TTAGTAACAAATGAAAGAGATCATTACATCAAGTGCCCTTTTAGATCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACAAATGAAAGAGATCATTACATCAAGTGCCCTTTTAGATCACC  100

seq1  CCAATTAAAACTTTAGTTTAGCTGTATTTTAATTCTAAGATACCAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAAACTTTAGTTTAGCTGTATTTTAATTCTAAGATACCAAATTC  150

seq1  TAATTTTCTGCTCTGATTGCTCTTGTTGACTTATCTTTGAAAGATGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTGCTCTGATTGCTCTTGTTGACTTATCTTTGAAAGATGTACT  200

seq1  CTCACTGCAATGTCTAGAGATTATTTAGCAAGATGCCAATGTTGGCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCAATGTCTAGAGATTATTTAGCAAGATGCCAATGTTGGCACCA  250

seq1  CTTAATGTGTTGATTGGTTGTATTATCAGTAGCTGTTTAAAATAAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTGTTGATTGGTTGTATTATCAGTAGCTGTTTAAAATAAATTAC  300

seq1  TATTAAACTATTATTGTCCTTGTGTGACAAGACACAATATTTTGGTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACTATTATTGTCCTTGTGTGACAAGACACAATATTTTGGTGTTC  350

seq1  TTAAATATGAAATAATCATTACAAATAAACACTTGACTAATGTTAAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGAAATAATCATTACAAATAAACACTTGACTAATGTTAAGCTC  400

seq1  TAATATGTGTGATTTTATTATT-AATATCAGTTTGTAA  437
      |||||||||||||||||||||| |||||||||||| ||
seq2  TAATATGTGTGATTTTATTATTAAATATCAGTTTGAAA  438


seq1: chr14_98343960_98345031
seq2: B6Ng01-192M01.g_63_1152 (reverse)

seq1  AATTATTTATGTTTTCTTCAT-GCTGCTTTGTCCTCCATGGGAGC--AAA  47
      ||||||||| ||||||||||| |||||||||||  |||| |||||  |||
seq2  AATTATTTAAGTTTTCTTCATGGCTGCTTTGTCTCCCAT-GGAGCAAAAA  49

seq1  ATTGT-ATTTGCTG-AAATAT-AGAGCT-AATTATA-CCATGAACCCTG-  91
      ||||| ||| |||| |||||| |||||| ||||||| |||||||||||| 
seq2  ATTGTAATTGGCTGAAAATATAAGAGCTAAATTATACCCATGAACCCTGC  99

seq1  CAAC-AAAAAGA-CGGAGCAGATGTTACTTCAG-ACGTGCTAAAAGTCCT  138
      |||| ||||||| || ||||||||||||||||| ||||||||||||||||
seq2  CAACAAAAAAGACCGAAGCAGATGTTACTTCAGAACGTGCTAAAAGTCCT  149

seq1  CGTGC-TTAATGTGCATCGA--GGAAAACACCACGCAGAGTCGTCAAAAA  185
      ||||| ||||||||||||||  | ||||||||||||||||||||||||||
seq2  CGTGCTTTAATGTGCATCGAAGGAAAAACACCACGCAGAGTCGTCAAAAA  199

seq1  CAATATCTAATCAAGGCAG-TTTTAGACATGCAAATCTTTTTAACACCAG  234
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATATCTAATCAAGGCAGTTTTTAGACATGCAAATCTTTTTAACACCAG  249

seq1  AGTTAAATAGAGAAATTCTGTC-AATAATATTTCAGGACTCA-CCATGTG  282
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  AGTTAAATAGAGAAATTCTGTCAAATAATATTTCAGGACTCACCCATGTG  299

seq1  CTTGCCAGAATAATTATATTAGGTAGTGATTTCTAATTAATATAAT-AAA  331
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGCCAGAATAATTATATTAGGTAGTGATTTCTAATTAATATAATAAAA  349

seq1  TGTGTGAGTCTACGTTGTTCCATCCCAGGGGGACGAAATTGAGGGAGGCA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTCTACGTTGTTCCATCCCAGGGGGACGAAATTGAGGGAGGCA  399

seq1  GAAATGAAGATCATATGCTGTGAGTTAATAATAAAATACACAATGTTTTC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGATCATATGCTGTGAGTTAATAATAAAATACACAATGTTTTC  449

seq1  ATGGGGAACATGATTCTATAATGCGAAAAATGATTTGAATGCCTCATAAT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAACATGATTCTATAATGCGAAAAATGATTTGAATGCCTCATAAT  499

seq1  TAATAAGCTATACTTTGCTTCATCATGTGTTTTCTTTTAATGCATAGCCA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGCTATACTTTGCTTCATCATGTGTTTTCTTTTAATGCATAGCCA  549

seq1  CTCTTATCTATTTGTTTGAATATTTCAGTTGCTAGAAAGTTAACATCAGA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCTATTTGTTTGAATATTTCAGTTGCTAGAAAGTTAACATCAGA  599

seq1  TTTTCTTTTATACATTTTCATCTATAAGTGAGTTTTGATTATTTTTATAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATACATTTTCATCTATAAGTGAGTTTTGATTATTTTTATAA  649

seq1  ATATATAGCTACACATAAGTACACAGATACAGTGTAGTTATATATACTAC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGCTACACATAAGTACACAGATACAGTGTAGTTATATATACTAC  699

seq1  ATGGATAGATTGTATCTATCAAAATAAAATAATCCTTATGGATTCTTTTC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGATTGTATCTATCAAAATAAAATAATCCTTATGGATTCTTTTC  749

seq1  TTTTCTTTTCTTTTTTTCTTTCTTTCTTCCTTTTTCTTTTTTCCAAACTG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTTTTCTTTCTTTCTTCCTTTTTCTTTTTTCCAAACTG  799

seq1  AAAATATTCCTCGTGCTGCATTGTAACTAAAAACAATTCAAATCAAGCTA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCCTCGTGCTGCATTGTAACTAAAAACAATTCAAATCAAGCTA  849

seq1  GTTTGAAGTCACTGTAAGAGGGCTATATTTTAATGACAAACTTCCCAGTG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGTCACTGTAAGAGGGCTATATTTTAATGACAAACTTCCCAGTG  899

seq1  AAAGAAGTGTGCTGGCACCACAGGGTGTGAAGCCTTTCTGAGCTCTAAAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTGTGCTGGCACCACAGGGTGTGAAGCCTTTCTGAGCTCTAAAA  949

seq1  TCTACTGGGTTCACCACACAGCTTCCCTCCTGGGGTGTGCTAAATGTGTG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGTTCACCACACAGCTTCCCTCCTGGGGTGTGCTAAATGTGTG  999

seq1  CATTGACTGACTGAGCCAGGCGTCACCTCAGCATTTGTTTTAGGAAAATA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTGACTGAGCCAGGCGTCACCTCAGCATTTGTTTTAGGAAAATA  1049

seq1  AGGAACACCACAGAATGCCAACAACCTAAGCTAAGGAATTC  1072
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCACAGAATGCCAACAACCTAAGCTAAGGAATTC  1090


| Home | SequenceCutter | Blast | Download |