BAC Information

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BAC

Clone NameB6Ng01-193H09
Chromosome14 (Build37)
Map Location 111,881,076 - 112,012,794
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H09.bB6Ng01-193H09.g
ACCGA016425GA016426
length1,105690
definitionB6Ng01-193H09.b B6Ng01-193H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,881,076 - 111,882,186)(112,012,251 - 112,012,794)
sequence
gaattcttcagttgcttgtttgcttgttgttctttctttagggttgaggg
gttgagtttttgagtggagatatatatatatatatatatatatatataca
agccaaactgtttggaaagtaaattaaccttacccgaggttatctctctt
acaaaatagttccaatagagcagcaaggaacaggcaatattcattgttat
catgattcagtatttctccagagatatagaatccatagccatttaatctt
caaaaattattaaaggtgaattgtctattatgagagaaaagcaactgtta
ccacatttccaggctttcaagaatctgctgtctggtcactatgcctcgcc
tacctacatcaacacccagtgtgtgaggggagctgctgctttgaccagga
cacagggagtgcaacacaccctttatccaaagcttcagcttcttttcaag
gcaaaggtgaatacagatttcccagtttctagttctcaccaggtgctgtt
accctaaagtagcttgtcttgatttgaagtgagccaaacctccttgtaga
ctgagaaacctgtctgcagtctgactctttgaggtgttgcctatttaaac
tataaacaaagacactttctcaggagaaagggattgtgaaggccatcctt
ctcctcagatggcagaaccacaggatcctctgcatgtcttcttcacgtct
cagtttctcagaatcacaaagatcccatgcggcctctcaggtagcaagct
aggtgctgtcacctcatgccatttctctacacatatttttacagatgtcc
ccaaaacacccccaaagcaggtactatggggctctgctttggtcagagga
gataataatattaagggtttttttttcctcctcagggaagacttgaaatt
tacatgttgggaatgagcaatgaagaaataattttatctcccaaaggatg
ccattatgtatttccctaaaaataattttatttaaagaacaatgggggaa
cacttgaatgtacatatgaaataaattatcttaataaacaggagaagaat
acaaggcaacatagccatatgataaattcaatgcatctttgttatacatg
cagta

gaattcaggaaagtccaactttgtttgtaatagtctcaggaataagggta
atttaaatggtgcatgtagagcttagagctgtattgtctgctgttcttaa
ggcctgaccctgactttggttcactgcgctggaaaagaatcatacgagtg
ataaaccttgataaagtaatatttttatttagaagtaaaagcatccatga
catttccatagaattataaatattccattttaagcacaattctttccaac
aaaaatgatcacagtaatcagcacctaaactacagctacaaaattgtcat
agttatgaagagacaccatgacaagtaactcttaccacggacaacattta
atcagggccagcttacggtttccgaggtttagtcctttattgtggcacaa
atcatggcggtgtgtaggcagacatggtggagctgcagagagaggtaggt
ggggagaggatggaggtccccctgggatagcaagctactcagggtagctt
ggattagcccacagggctctgccaacagggaagattggtggagaaaggca
aggttacctgcatgtttcaggagtctgttcaaggtagaggagaggtggca
ggaaaaatggagatgctccctggggatacaggttgctcaggaccaaattt
ttattctttgttattaaaatttgtggtggttaaggcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111881076_111882186
seq2: B6Ng01-193H09.b_41_1145

seq1  GAATTCTTCAGTTGCTTGTTTGCTTGTTGTTCTTTCTTTAGGGTTGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTGCTTGTTTGCTTGTTGTTCTTTCTTTAGGGTTGAGGG  50

seq1  GTTGAGTTTTTGAGTGGAGATATATATATATATATATATATATATATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTTTTGAGTGGAGATATATATATATATATATATATATATATACA  100

seq1  AGCCAAACTGTTTGGAAAGTAAATTAACCTTACCCGAGGTTATCTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACTGTTTGGAAAGTAAATTAACCTTACCCGAGGTTATCTCTCTT  150

seq1  ACAAAATAGTTCCAATAGAGCAGCAAGGAACAGGCAATATTCATTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAGTTCCAATAGAGCAGCAAGGAACAGGCAATATTCATTGTTAT  200

seq1  CATGATTCAGTATTTCTCCAGAGATATAGAATCCATAGCCATTTAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCAGTATTTCTCCAGAGATATAGAATCCATAGCCATTTAATCTT  250

seq1  CAAAAATTATTAAAGGTGAATTGTCTATTATGAGAGAAAAGCAACTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTATTAAAGGTGAATTGTCTATTATGAGAGAAAAGCAACTGTTA  300

seq1  CCACATTTCCAGGCTTTCAAGAATCTGCTGTCTGGTCACTATGCCTCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTCCAGGCTTTCAAGAATCTGCTGTCTGGTCACTATGCCTCGCC  350

seq1  TACCTACATCAACACCCAGTGTGTGAGGGGAGCTGCTGCTTTGACCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACATCAACACCCAGTGTGTGAGGGGAGCTGCTGCTTTGACCAGGA  400

seq1  CACAGGGAGTGCAACACACCCTTTATCCAAAGCTTCAGCTTCTTTTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGTGCAACACACCCTTTATCCAAAGCTTCAGCTTCTTTTCAAG  450

seq1  GCAAAGGTGAATACAGATTTCCCAGTTTCTAGTTCTCACCAGGTGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTGAATACAGATTTCCCAGTTTCTAGTTCTCACCAGGTGCTGTT  500

seq1  ACCCTAAAGTAGCTTGTCTTGATTTGAAGTGAGCCAAACCTCCTTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAAGTAGCTTGTCTTGATTTGAAGTGAGCCAAACCTCCTTGTAGA  550

seq1  CTGAGAAACCTGTCTGCAGTCTGACTCTTTGAGGTGTTGCCTATTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACCTGTCTGCAGTCTGACTCTTTGAGGTGTTGCCTATTTAAAC  600

seq1  TATAAACAAAGACACTTTCTCAGGAGAAAGGGATTGTGAAGGCCATCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAAGACACTTTCTCAGGAGAAAGGGATTGTGAAGGCCATCCTT  650

seq1  CTCCTCAGATGGCAGAACCACAGGATCCTCTGCATGTCTTCTTCACGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGATGGCAGAACCACAGGATCCTCTGCATGTCTTCTTCACGTCT  700

seq1  CAGTTTCTCAGAATCACAAAGATCCCATGCGGCCTCTCAGGTAGCAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCAGAATCACAAAGATCCCATGCGGCCTCTCAGGTAGCAAGCT  750

seq1  AGGTGCTGTCACCTCATGCCATTTCTCTACACATATTTTTACAGATGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGTCACCTCATGCCATTTCTCTACACATATTTTTACAGATGTCC  800

seq1  CCAAAACACCCCCAAAGCAGGTACTAT-GGGCTCTGCTTTGGTCAGAGGA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAAAACACCCCCAAAGCAGGTACTATGGGGCTCTGCTTTGGTCAGAGGA  850

seq1  GATAATAATATTAA-GGTTTTTTTTTCTTCCTCA-GGAAGACTTGAAAAT  897
      |||||||||||||| |||||||||||| |||||| ||||||||||||| |
seq2  GATAATAATATTAAGGGTTTTTTTTTCCTCCTCAGGGAAGACTTGAAATT  900

seq1  TACATGTT-GGAATGAGCAATTGAAG-AATAA-TTTATTTCCCAAAGGAT  944
      |||||||| ||||||||||| ||||| ||||| ||||| |||||||||||
seq2  TACATGTTGGGAATGAGCAA-TGAAGAAATAATTTTATCTCCCAAAGGAT  949

seq1  G-CATTATTGTATTTCCCTAAAAATAA-TTTATTTAAAG-ACAATGGGGG  991
      | ||||| ||||||||||||||||||| ||||||||||| ||||||||||
seq2  GCCATTA-TGTATTTCCCTAAAAATAATTTTATTTAAAGAACAATGGGGG  998

seq1  AACACTTGAAATGTACATATAAAATAAAATAAC-TAATAAAAAAGAAAGA  1040
      |||||||| ||||||||||| ||||||| || | ||||||| | |  |||
seq2  AACACTTG-AATGTACATATGAAATAAATTATCTTAATAAACAGG--AGA  1045

seq1  AGAAAAACAAAGCCAACAATAGCCATTTAATGATAAAATTCAATAGCATT  1090
      |||| |   ||| |||| ||||||||   ||||| ||||||||| |||| 
seq2  AGAATA--CAAGGCAAC-ATAGCCAT---ATGAT-AAATTCAAT-GCAT-  1086

seq1  CTTTTTTTATACATGCCAGTA  1111
        ||| ||||||||| |||||
seq2  -CTTTGTTATACATG-CAGTA  1105


seq1: chr14_112012251_112012794
seq2: B6Ng01-193H09.g_210_754 (reverse)

seq1  TTAAGCCTTAAACCACCACAAATTTTAATAACAAAGAATAAAAATTTGGT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTT-AACCACCACAAATTTTAATAACAAAGAATAAAAATTTGGT  49

seq1  CCTGAGCAACCTGCTAT-CCCAGGG-GCATCTCCA-TTTTCCTGCCACCT  97
      ||||||||||||| ||| ||||||| ||||||||| ||||||||||||||
seq2  CCTGAGCAACCTG-TATCCCCAGGGAGCATCTCCATTTTTCCTGCCACCT  98

seq1  CTCCTCTACCTTGAACAGACTCCTGAAACATGCAGGTAACCTTGCCTTTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTACCTTGAACAGACTCCTGAAACATGCAGGTAACCTTGCCTTTC  148

seq1  TCCACCAATCTTCCCTGTTGGCAGAGCCCTGTGGGCTAATCCAAGCTACC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAATCTTCCCTGTTGGCAGAGCCCTGTGGGCTAATCCAAGCTACC  198

seq1  CTGAGTAGCTTGCTATCCCAGGGGGACCTCCATCCTCTCCCCACCTACCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGCTTGCTATCCCAGGGGGACCTCCATCCTCTCCCCACCTACCT  248

seq1  CTCTCTGCAGCTCCACCATGTCTGCCTACACACCGCCATGATTTGTGCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCAGCTCCACCATGTCTGCCTACACACCGCCATGATTTGTGCCA  298

seq1  CAATAAAGGACTAAACCTCGGAAACCGTAAGCTGGCCCTGATTAAATGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGGACTAAACCTCGGAAACCGTAAGCTGGCCCTGATTAAATGTT  348

seq1  GTCCGTGGTAAGAGTTACTTGTCATGGTGTCTCTTCATAACTATGACAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTGGTAAGAGTTACTTGTCATGGTGTCTCTTCATAACTATGACAAT  398

seq1  TTTGTAGCTGTAGTTTAGGTGCTGATTACTGTGATCATTTTTGTTGGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCTGTAGTTTAGGTGCTGATTACTGTGATCATTTTTGTTGGAAA  448

seq1  GAATTGTGCTTAAAATGGAATATTTATAATTCTATGGAAATGTCATGGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGCTTAAAATGGAATATTTATAATTCTATGGAAATGTCATGGAT  498

seq1  GCTTTTACTTCTAAATAAAAATATTACTTTATCAAGGTTTATCACTC  544
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACTTCTAAATAAAAATATTACTTTATCAAGGTTTATCACTC  545


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