BAC Information

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BAC

Clone NameB6Ng01-196C04
Chromosome14 (Build37)
Map Location 112,846,831 - 112,891,299
singlet/doubletdoublet
Overlap geneEG223186
Upstream geneSlitrk5, LOC100043501
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196C04.bB6Ng01-196C04.g
ACCGA018358GA018359
length1,1401,139
definitionB6Ng01-196C04.b B6Ng01-196C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,846,831 - 112,847,969)(112,890,173 - 112,891,299)
sequence
gaattctacccacgcatctaacatttctgttactgtcttcccactgccga
acacaagcttaaatcacatttgttctagtttttcctatatctcataatgc
ttccatttagttttctttgtaacttgagtgtttttggatataattggtat
tctttttcatgtagtgcccccaatttactaattttatgtgtctgtagttt
tttgaaacagttaatgtctttattactgtaactgtgacaacaaatagcta
aacatttgatttatatttgtaatttctttacttgtggtagatagatgatt
gatagacaatagatagatagatagatagatagatagatagatagatagat
agatagtaggtttaggctatctctggaacattgtgttataatgcacaatg
atacatgatcaaattagcatagggcagccctgaattctttcttcagatct
ccataaaactatctgcctacaatacatgttgtgctctccccattcttcta
aggtaaactgtagagggggaatgaaattccactcacttctttactctagg
tgtcaaaaacttattagattacctaacttgcagtgacataattttgtcaa
agaattcaacagaggaaaacaatacacaggaaacttcaggtttattcctg
cctatgtgaatgtataacaatacctcatagcaaaaacttattgttgacac
tgttacaccgaagaatgctttacaatatagtaattctgaaattttttttc
actaataaatatccagtttatatcataatatgttttactttctcatcatt
atggttccacatgatttaaaaatacttttgagaatatttaccactcctaa
atattttcctttattcttacaattctataaatgccatactttcctcgttg
tttgtttatttgtctctgagttgctttcgatttttctttgtgcatttctt
tttgtgccaattatcataaatttagaaggtacaattctaatgaggtgact
atggctaacttttatggaacattgcattttcttatgtgtttgagaagaat
gttgtcatgctaaggtgaactcgtggtgtgttgtgtaaacatggatttat
tccgtaatataggaggtagtgacaccaaccatttttgagg

gaattcttagatggttaccaccaaaggagaatatctctaatattataaga
caggtaatcttatgtatgtagctgccaacaaaaaagattccatcttaagc
aatgcagaagacaagggcctaccccaagatgtgctattgttgttggtggt
ggtgttttcttttgtcccaacatgtgcaaatatgataaattccattttca
tctgttttgtaatttcctgtgattttcttgttactctaggcaaatgacaa
tgtgcctatagaatgtaactacaggtattttccattgcatgtttgcaaat
ctttgaggtatataattccagtatctattcatagctgtgttaatagagca
ggtttaggtattatatacttactactctacatcaagtttcttgattataa
ttgagaaaatatattttcacaggtttactttatttatggatattaactca
aggtcaaaaatgtaaagacatttgttccttaagttcacagaaatgaattg
tgaatcaaatatgactatttattctaaactttaaacacttccatatgaaa
cggctcatccaattctccttttgaaaatgcaggtgtctgtgcttgcacaa
tgattaatagaattatttggcaagacaactgcatgcccctcaagaatcaa
aaggtgattaaccagccaatgattttttttttattttcttcagcgtacaa
ctagaatttacctgtgaaccaactgcaatgaatcacttttaaattaatac
caatgttgtatctttctatttctaaattaagatttcaatgttgtaattta
tttattttttccattttttattaggtatttagctcatttacatttccaat
gctataccaaaagttcccccatatcctcccacccccactcccctgcccac
cactccccctttttggccctggggttcccctgtactggggcatataaagt
tgcaagtccaatgggcctctctttccagtgaatgggccgactagggcaat
cctttggaattaatatgccagctagagtcagagagcttccggggtactgg
tagatctcatatgtgtggtttcacacaataggggttgcagatcctttaac
ctctttggctacttctcctgagctccccaattgggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112846831_112847969
seq2: B6Ng01-196C04.b_48_1187

seq1  GAATTCTACCCACGCATCTAACATTTCTGTTACTGTCTTCCCACTGCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCCACGCATCTAACATTTCTGTTACTGTCTTCCCACTGCCGA  50

seq1  ACACAAGCTTAAATCACATTTGTTCTAGTTTTTCCTATATCTCATAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTTAAATCACATTTGTTCTAGTTTTTCCTATATCTCATAATGC  100

seq1  TTCCATTTAGTTTTCTTTGTAACTTGAGTGTTTTTGGATATAATTGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTAGTTTTCTTTGTAACTTGAGTGTTTTTGGATATAATTGGTAT  150

seq1  TCTTTTTCATGTAGTGCCCCCAATTTACTAATTTTATGTGTCTGTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCATGTAGTGCCCCCAATTTACTAATTTTATGTGTCTGTAGTTT  200

seq1  TTTGAAACAGTTAATGTCTTTATTACTGTAACTGTGACAACAAATAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAGTTAATGTCTTTATTACTGTAACTGTGACAACAAATAGCTA  250

seq1  AACATTTGATTTATATTTGTAATTTCTTTACTTGTGGTAGATAGATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGATTTATATTTGTAATTTCTTTACTTGTGGTAGATAGATGATT  300

seq1  GATAGACAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  350

seq1  AGATAGTAGGTTTAGGCTATCTCTGGAACATTGTGTTATAATGCACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTAGGTTTAGGCTATCTCTGGAACATTGTGTTATAATGCACAATG  400

seq1  ATACATGATCAAATTAGCATAGGGCAGCCCTGAATTCTTTCTTCAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGATCAAATTAGCATAGGGCAGCCCTGAATTCTTTCTTCAGATCT  450

seq1  CCATAAAACTATCTGCCTACAATACATGTTGTGCTCTCCCCATTCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAACTATCTGCCTACAATACATGTTGTGCTCTCCCCATTCTTCTA  500

seq1  AGGTAAACTGTAGAGGGGGAATGAAATTCCACTCACTTCTTTACTCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACTGTAGAGGGGGAATGAAATTCCACTCACTTCTTTACTCTAGG  550

seq1  TGTCAAAAACTTATTAGATTACCTAACTTGCAGTGACATAATTTTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAACTTATTAGATTACCTAACTTGCAGTGACATAATTTTGTCAA  600

seq1  AGAATTCAACAGAGGAAAACAATACACAGGAAACTTCAGGTTTATTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAACAGAGGAAAACAATACACAGGAAACTTCAGGTTTATTCCTG  650

seq1  CCTATGTGAATGTATAACAATACCTCATAGCAAAAACTTATTGTTGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGAATGTATAACAATACCTCATAGCAAAAACTTATTGTTGACAC  700

seq1  TGTTACACCGAAGAATGCTTTACAATATAGTAATTCTGAAATTTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACCGAAGAATGCTTTACAATATAGTAATTCTGAAATTTTTTTTC  750

seq1  ACTAATAAATATCCAGTTTATATCATAATATGTTTTACTTTCTCATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAATATCCAGTTTATATCATAATATGTTTTACTTTCTCATCATT  800

seq1  ATGGTTCCACATGATTTAAAAATACTTTTGAGAATATTTACCACTCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCACATGATTTAAAAATACTTTTGAGAATATTTACCACTCCTAA  850

seq1  ATATTTTCCTTTATTCTTACAATTCTATAAATGCCATACTTTCCTCGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTTTATTCTTACAATTCTATAAATGCCATACTTTCCTCGTTG  900

seq1  TTTGTTTATTTGTCTCTGAGTTGCTTTCGATTTTTCTTTGTGCATTTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTTGTCTCTGAGTTGCTTTCGATTTTTCTTTGTGCATTTCTT  950

seq1  TTTGTGCCAATTATCATAAATTTAGAA-GTACAATTCTAATGAGGGTGAC  999
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TTTGTGCCAATTATCATAAATTTAGAAGGTACAATTCTAATGA-GGTGAC  999

seq1  TATGGCTAAC-TTTATTGGACATTGCATTTTCTTATGTGTTTGAGAAGAA  1048
      |||||||||| ||||| | |||||||||||||||||||||||||||||||
seq2  TATGGCTAACTTTTATGGAACATTGCATTTTCTTATGTGTTTGAGAAGAA  1049

seq1  TGTTGTTCCATGCTAGGGTGAAACTCGT-GTGTG-TGTGTAAACATGGAT  1096
      ||||||  ||||||| |||| ||||||| ||||| |||||||||||||||
seq2  TGTTGT--CATGCTAAGGTG-AACTCGTGGTGTGTTGTGTAAACATGGAT  1096

seq1  TTATTCCTTAATATAAGA-GTAGTGACACAAAACATTTTTGAGG  1139
      ||||||| ||||||| || |||||||||| || |||||||||||
seq2  TTATTCCGTAATATAGGAGGTAGTGACACCAACCATTTTTGAGG  1140


seq1: chr14_112890173_112891299
seq2: B6Ng01-196C04.g_67_1205 (reverse)

seq1  GGCTCCCAATGGAGGAGCT-AGAGAAAGTAGCCAAGGAGCTAAAGGGATC  49
      |||||||||| | |||||| ||   |||||||||| ||| | || |||||
seq2  GGCTCCCAATTGGGGAGCTCAGGAGAAGTAGCCAAAGAGGTTAAAGGATC  50

seq1  TGCAA-CCCTATAG-GTGGAACAACA-TTATGA-ACTAACCAGTACCCCG  95
      ||||| |||||| | ||| ||| |||  ||||| |   ||||||||||||
seq2  TGCAACCCCTATTGTGTGAAACCACACATATGAGATCTACCAGTACCCCG  100

seq1  G-AGCTCT-TGACTCTAGCT-GCATAT--ATATCAAAAGA-TGGCCTAGT  139
      | |||||| ||||||||||| ||||||  ||  |||| || || ||||||
seq2  GAAGCTCTCTGACTCTAGCTGGCATATTAATTCCAAAGGATTGCCCTAGT  150

seq1  CGGCC--ATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATG  187
      |||||   |||||||||||||||||||||||||||||| |||||||||||
seq2  CGGCCCATTCACTGGAAAGAGAGGCCCATTGGACTTGC-AACTTTATATG  199

seq1  CCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGG  237
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CCCCAGTACAGGGGAACCCCAGGGCCAAAAAGGGGGAGT-GGTGGGCAGG  248

seq1  GGAGTGGGGGTGGGAGGATATGGGGG-ACTTTTGGTATAGCATTGGAAAT  286
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAGTGGGGGTGGGAGGATATGGGGGAACTTTTGGTATAGCATTGGAAAT  298

seq1  GTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAATAAATAAATTACA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAATAAATAAATTACA  348

seq1  ACATTGAAATCTTAATTTAGAAATAGAAAGATACAACATTGGTATTAATT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAATCTTAATTTAGAAATAGAAAGATACAACATTGGTATTAATT  398

seq1  TAAAAGTGATTCATTGCAGTTGGTTCACAGGTAAATTCTAGTTGTACGCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGATTCATTGCAGTTGGTTCACAGGTAAATTCTAGTTGTACGCT  448

seq1  GAAGAAAATAAAAAAAAAATCATTGGCTGGTTAATCACCTTTTGATTCTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATAAAAAAAAAATCATTGGCTGGTTAATCACCTTTTGATTCTT  498

seq1  GAGGGGCATGCAGTTGTCTTGCCAAATAATTCTATTAATCATTGTGCAAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCATGCAGTTGTCTTGCCAAATAATTCTATTAATCATTGTGCAAG  548

seq1  CACAGACACCTGCATTTTCAAAAGGAGAATTGGATGAGCCGTTTCATATG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACCTGCATTTTCAAAAGGAGAATTGGATGAGCCGTTTCATATG  598

seq1  GAAGTGTTTAAAGTTTAGAATAAATAGTCATATTTGATTCACAATTCATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTAAAGTTTAGAATAAATAGTCATATTTGATTCACAATTCATT  648

seq1  TCTGTGAACTTAAGGAACAAATGTCTTTACATTTTTGACCTTGAGTTAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACTTAAGGAACAAATGTCTTTACATTTTTGACCTTGAGTTAAT  698

seq1  ATCCATAAATAAAGTAAACCTGTGAAAATATATTTTCTCAATTATAATCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAATAAAGTAAACCTGTGAAAATATATTTTCTCAATTATAATCA  748

seq1  AGAAACTTGATGTAGAGTAGTAAGTATATAATACCTAAACCTGCTCTATT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGATGTAGAGTAGTAAGTATATAATACCTAAACCTGCTCTATT  798

seq1  AACACAGCTATGAATAGATACTGGAATTATATACCTCAAAGATTTGCAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCTATGAATAGATACTGGAATTATATACCTCAAAGATTTGCAAA  848

seq1  CATGCAATGGAAAATACCTGTAGTTACATTCTATAGGCACATTGTCATTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATGGAAAATACCTGTAGTTACATTCTATAGGCACATTGTCATTT  898

seq1  GCCTAGAGTAACAAGAAAATCACAGGAAATTACAAAACAGATGAAAATGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGTAACAAGAAAATCACAGGAAATTACAAAACAGATGAAAATGG  948

seq1  AATTTATCATATTTGCACATGTTGGGACAAAAGAAAACACCACCACCAAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCATATTTGCACATGTTGGGACAAAAGAAAACACCACCACCAAC  998

seq1  AACAATAGCACATCTTGGGGTAGGCCCTTGTCTTCTGCATTGCTTAAGAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGCACATCTTGGGGTAGGCCCTTGTCTTCTGCATTGCTTAAGAT  1048

seq1  GGAATCTTTTTTGTTGGCAGCTACATACATAAGATTACCTGTCTTATAAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTTTTTGTTGGCAGCTACATACATAAGATTACCTGTCTTATAAT  1098

seq1  ATTAGAGATATTCTCCTTTGGTGGTAACCATCTAAGAATTC  1127
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGATATTCTCCTTTGGTGGTAACCATCTAAGAATTC  1139


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