BAC Information

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BAC

Clone NameB6Ng01-196C11
Chromosome14 (Build37)
Map Location 25,230,341 - 25,428,049
singlet/doubletdoublet
Overlap genePolr3a, Rps24
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325
Downstream geneLOC669315, LOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196C11.bB6Ng01-196C11.g
ACCGA018369GA018370
length1,129634
definitionB6Ng01-196C11.b B6Ng01-196C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,230,341 - 25,231,453)(25,427,412 - 25,428,049)
sequence
gaattccacatcccttttgtcagtttatagtaagaggtcactattcctga
tgtttgcttcttgtcttaattgctgctgaataagaagcactttatatcac
taggacagatgtctgtatgaactcaccatggtcagacaaggcccatggcc
tcaacaagagctccttggatgagcaactgagaatctgttacctgaactga
ggtgaatcagcactgctgcttggcttgctcaatgccactccacctcaccc
tgtccctgctgaggattccaagttgtgcctatacctgcatgtgagctagg
cctacataggccaggacaccgttctaggtacccactctcctcaattatgc
aggatttttttcaccaatgtactcatgtaaatacattactgtcacctcat
tactgtcactggtcacatcttactgagaacagtagttgcttctcaaaacc
cagtcctattacaaatctgggccatggtcaagtataacaaggtactcatt
gggttggcagtgccagaactccatgctgtactgaaagctgatggtggtgt
ggtgctgaggttatcatgtgttgtttataggccccaagatccctatgggt
cagcttgattaaatctctggctatagaagtggagtgtctttgataacgtg
tgtccagccccattggaggcatcagtggggttggcctgagaacttgagac
ttcctcctggctcagtttcactgggaaggcagagtttttcacagtatgct
agcaactggcatatcactctgtccttcaaagcttgatagccattttcatt
tggactcattgtggaatgaaggacagataagagcaacgtccttattaaag
atcacttccacgtctctgtctttcctcaaatgaaagagtggtaggcaaaa
tggtacatatccttccttttggtagcaaaggattactaggggagtccttg
gagctaggagatgttatctattttggtttttgagaacagggtgccattat
ctgatgtctgtcctcaacctagtttggcagattcttaactaggatcttag
gtcacatggactaccactttcacagcagctaggatttaaaaggtggggaa
tctccagtactggttcaggacagccacta

gaattcttttcattcatttcttcacctattgtggaaagagattcccgttc
cctgttttcctgatgaattgagttctgtggtgaatgaatcagttgtctaa
gtctctggcagcagcagaagcattcagggttgtttgactccaaagcccac
ctgaggtgggtctgtcctcagtgatgggaagcagaggaaccctagaaatg
tatgctgcaggatcattagcatgatttaatgggctgctcccttgagccag
gattgtggacagctccatctgacatggccatatgggccaacacaccaggg
gaagaggctaactatcctccagccattgcgggaagccctgccctggccag
gagggggaagttgtaagtgatgtattaaaaacagaagaaagaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggagggagg
gagggagagagaaagagagaaagagagagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagagaaagaaagagtaagagagggagagaggga
gacagagtgaaatagagaaagagagagaaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25230341_25231453
seq2: B6Ng01-196C11.b_40_1168

seq1  GAATTCCACATCCCTTTTGTCAGTTTATAGTAAGAGGTCACTATTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCCCTTTTGTCAGTTTATAGTAAGAGGTCACTATTCCTGA  50

seq1  TGTTTGCTTCTTGTCTTAATTGCTGCTGAATAAGAAGCACTTTATATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTCTTGTCTTAATTGCTGCTGAATAAGAAGCACTTTATATCAC  100

seq1  TAGGACAGATGTCTGTATGAACTCACCATGGTCAGACAAGGCCCATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGATGTCTGTATGAACTCACCATGGTCAGACAAGGCCCATGGCC  150

seq1  TCAACAAGAGCTCCTTGGATGAGCAACTGAGAATCTGTTACCTGAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGAGCTCCTTGGATGAGCAACTGAGAATCTGTTACCTGAACTGA  200

seq1  GGTGAATCAGCACTGCTGCTTGGCTTGCTCAATGCCACTCCACCTCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCAGCACTGCTGCTTGGCTTGCTCAATGCCACTCCACCTCACCC  250

seq1  TGTCCCTGCTGAGGATTCCAAGTTGTGCCTATACCTGCATGTGAGCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCTGAGGATTCCAAGTTGTGCCTATACCTGCATGTGAGCTAGG  300

seq1  CCTACATAGGCCAGGACACCGTTCTAGGTACCCACTCTCCTCAATTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAGGCCAGGACACCGTTCTAGGTACCCACTCTCCTCAATTATGC  350

seq1  AGGATTTTTTTCACCAATGTACTCATGTAAATACATTACTGTCACCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTTTCACCAATGTACTCATGTAAATACATTACTGTCACCTCAT  400

seq1  TACTGTCACTGGTCACATCTTACTGAGAACAGTAGTTGCTTCTCAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCACTGGTCACATCTTACTGAGAACAGTAGTTGCTTCTCAAAACC  450

seq1  CAGTCCTATTACAAATCTGGGCCATGGTCAAGTATAACAAGGTACTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTATTACAAATCTGGGCCATGGTCAAGTATAACAAGGTACTCATT  500

seq1  GGGTTGGCAGTGCCAGAACTCCATGCTGTACTGAAAGCTGATGGTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGCAGTGCCAGAACTCCATGCTGTACTGAAAGCTGATGGTGGTGT  550

seq1  GGTGCTGAGGTTATCATGTGTTGTTTATAGGCCCCAAGATCCCTATGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAGGTTATCATGTGTTGTTTATAGGCCCCAAGATCCCTATGGGT  600

seq1  CAGCTTGATTAAATCTCTGGCTATAGAAGTGGAGTGTCTTTGATAACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGATTAAATCTCTGGCTATAGAAGTGGAGTGTCTTTGATAACGTG  650

seq1  TGTCCAGCCCCATTGGAGGCATCAGTGGGGTTGGCCTGAGAACTTGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCCCCATTGGAGGCATCAGTGGGGTTGGCCTGAGAACTTGAGAC  700

seq1  TTCCTCCTGGCTCAGTTTCACTGGGAAGGCAGAGTTTTTCACAGTATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGGCTCAGTTTCACTGGGAAGGCAGAGTTTTTCACAGTATGCT  750

seq1  AGCAACTGGCATATCACTCTGTCCTTCAAAGCTTGATAGCCATTTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGGCATATCACTCTGTCCTTCAAAGCTTGATAGCCATTTTCATT  800

seq1  TGGACTCATTGTGGAATGAAGGACAGATAAGAGCAACGTCCTTATTAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCATTGTGGAATGAAGGACAGATAAGAGCAACGTCCTTATTAAAG  850

seq1  ATCACTTCCACGTCTCTGTC-TTCCTCAAATGAAAGAGTGGTAGGCAAAA  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCACTTCCACGTCTCTGTCTTTCCTCAAATGAAAGAGTGGTAGGCAAAA  900

seq1  TGGTACATAT-CTTCCTTTTGGTAGCAAAGGATTACTAGGTGAGTCCTTG  948
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TGGTACATATCCTTCCTTTTGGTAGCAAAGGATTACTAGGGGAGTCCTTG  950

seq1  GAGCTAGGAGATG-TATCCATTTTGGTTTTTGAG-ACAGGGTGCCATTAT  996
      ||||||||||||| |||| ||||||||||||||| |||||||||||||||
seq2  GAGCTAGGAGATGTTATCTATTTTGGTTTTTGAGAACAGGGTGCCATTAT  1000

seq1  CTGATG-CTGTCCTCAACCTAGTTTTGCAGAT--CTAACTA-GATCTTAG  1042
      |||||| |||||||||||||||||| ||||||   |||||| ||||||||
seq2  CTGATGTCTGTCCTCAACCTAGTTTGGCAGATTCTTAACTAGGATCTTAG  1050

seq1  GTCACAT-GACTACCAC-TTCACAGCAGCTAGGATT--AAAAGTGGG--A  1086
      ||||||| ||||||||| ||||||||||||||||||  ||| |||||  |
seq2  GTCACATGGACTACCACTTTCACAGCAGCTAGGATTTAAAAGGTGGGGAA  1100

seq1  TCTCCAGGACTGG-TCAGGACAG-CACTA  1113
      ||||||| ||||| ||||||||| |||||
seq2  TCTCCAGTACTGGTTCAGGACAGCCACTA  1129


seq1: chr14_25427412_25428049
seq2: B6Ng01-196C11.g_68_701 (reverse)

seq1  TCTCTTTCTCTCTCTTTCTCTCTTTCTCTCTGTCTCCCTCTCTCCCTCTC  50
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TCTCTTTCTCTCTCTTTCTCTATTTCACTCTGTCTCCCTCTCTCCCTCTC  50

seq1  TTTCTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  100
      || |||||||||||    ||||||||||||||||||||||||||||||||
seq2  TTACTCTTTCTTTC----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  96

seq1  TCTTTCTTTCTCTCTCTTTCTCTCTTTCTCTCTCCCTCCCTCCCTCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTCTCTCTTTCTCTCTTTCTCTCTCCCTCCCTCCCTCCCTT  146

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  196

seq1  TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTT  246

seq1  TCTTCTGTTTTTAATACATCACTTACAACTTCCCCCTCCTGGCCAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTTTTAATACATCACTTACAACTTCCCCCTCCTGGCCAGGGCA  296

seq1  GGGCTTCCCGCAATGGCTGGAGGATAGTTAGCCTCTTCCCCTGGTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCCGCAATGGCTGGAGGATAGTTAGCCTCTTCCCCTGGTGTGTT  346

seq1  GGCCCATATGGCCATGTCAGATGGAGCTGTCCACAATCCTGGCTCAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATATGGCCATGTCAGATGGAGCTGTCCACAATCCTGGCTCAAGGG  396

seq1  AGCAGCCCATTAAATCATGCTAATGATCCTGCAGCATACATTTCTAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCATTAAATCATGCTAATGATCCTGCAGCATACATTTCTAGGGT  446

seq1  TCCTCTGCTTCCCATCACTGAGGACAGACCCACCTCAGGTGGGCTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTTCCCATCACTGAGGACAGACCCACCTCAGGTGGGCTTTGGA  496

seq1  GTCAAACAACCCTGAATGCTTCTGCTGCTGCCAGAGACTTAGACAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAACCCTGAATGCTTCTGCTGCTGCCAGAGACTTAGACAACTGA  546

seq1  TTCATTCACCACAGAACTCAATTCATCAGGAAAACAGGGAACGGGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACCACAGAACTCAATTCATCAGGAAAACAGGGAACGGGAATCT  596

seq1  CTTTCCACAATAGGTGAAGAAATGAATGAAAAGAATTC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACAATAGGTGAAGAAATGAATGAAAAGAATTC  634


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