BAC Information

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BAC

Clone NameB6Ng01-196H16
Chromosome14 (Build37)
Map Location 27,831,967 - 27,938,443
singlet/doubletdoublet
Overlap geneIl17rd
Upstream geneLOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196H16.bB6Ng01-196H16.g
ACCGA018609GA018610
length1,077993
definitionB6Ng01-196H16.b B6Ng01-196H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,937,332 - 27,938,443)(27,831,967 - 27,832,947)
sequence
gaattccaggatggcctgggctacatggagaaatactgtcttgtaaaaca
aaaacaaaaaggaattaacaatattgacagaaactgactgaccaacccaa
acaaaaggggaccatgtaggactgtgacttcaacttttctctgggtccct
agcctgttggccaccctgcagattttgcactcatagggtctccacaacta
cataagcaattcctaaaagtaaatttctcaataaatagctgatagattat
ataccccactaatacttttctctctagatactaacagacactcgaaacaa
gtgatttctatcggagccatctctaagaaccagaacttgcatgaaatttc
aagtcatcagatgaacaagataaaaaaaacccacaaaatatgacaaccca
gaaaaacagtatctgtgtatgttttattcagatcttcatagaatgtgcat
ttgttttttgcgtacaatcttagatgggtgactgataataatttcctagt
aatgtgactagttcttccgatagatagcaattcattaggcagaagaaggt
atatgatatggattcagtccatgaacttttttgttgttcctggttctggg
gctcagatccccacggcctgctttggacatattatgaagctgtaatagga
ctctgactttctggtttcaaatcaaagaacagaagcaagtattgggatac
aggcctccaatggcaacaggctaagttataacttgtgcaagttcaaggcc
agcctgagctacataggaaaacattgtctcaaaagctaaaaaggaaaaca
gcgctcctggctcctcctctcagcagcattaggaccctggatacctgacc
tgatctctctggatctcagtttctcactgtgaaatggcatgagactacac
tgctagcatgcactttcaagatcacatttgactcattgtgaaatagtcag
tgataatcagcacatgaaagtacaccatctagagcgtacggaaagatatc
ataggagactatagagactacgagcgaacccacctcactgtccttgccta
aggccacggtgtgtatggcacatacac
gaattcactctgtagaccaggctggcctcgaactcagaaatcctcctgcc
tctgcctcccaagggctgggattaaaggcatgtgccaccactgcccggtt
ctctctctctttttccccccaagattttatttattttatatatctgagtg
ctgtatctgcatgtatacctgcaggccagaagaggacatcgggtccctca
tagatggttgtgagtcaccatgtggttgctgggaattgaactcaggacct
ctggaagagcagccaatgctcttaaccactgagccatctccacagccctg
aaaaaaaaaatcatctcttaagtgtgaataagaccaaagacaatgaagtt
cagataaattcaaatgcattcattgtgtgggaaacgctgcagagggaact
ttgggtgctgctttgtctatataaactcattttagagataaagaagaagg
gactggagaggttgctcagcactggactggaaagatggctgctcttgcag
aggacccaggttcatttcccagcacccacacggagctgtacaaactctgg
gctccagagcatccaacactctactctagtctccatataacacacatgca
tattcacacacacacacacacacacacacacatatatacacacacattaa
cacacacacacatatactcactcacacacatatatatacacatactcaca
cacatatgaatgctttcaaactcttctcaagattaagaactgtaagtgct
gagaatgtagctctaacgacagagcacttacttgaaatgtggcagaccct
cagtttgatcccctgttccatatatatgccatactaaatactatgtcgag
ttagtaagcttgattttcgtatgaattggccattctgaaacttattcttg
tacactaataggtttgcgcaagttcagtgaaaacaattgaggagactttg
gagctgggtttctcacaggtgttggaagtggtgggaaaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27937332_27938443
seq2: B6Ng01-196H16.b_44_1120 (reverse)

seq1  GTGTATGTGTGCATACACA-CGTGCGCCTAAGGCAAAGGGACAGTGAGGT  49
      |||||||||  |||||||| |||| |||| ||||||  ||||||||||||
seq2  GTGTATGTG-CCATACACACCGTG-GCCTTAGGCAA--GGACAGTGAGGT  46

seq1  GGTGTCTCGCTCTGTAGTCTCCTATAAGTCTCCTATGATAATTCTTTTCT  99
      || || |||||| ||||||| |||| ||||||||||||||  || |||| 
seq2  GG-GT-TCGCTC-GTAGTCT-CTAT-AGTCTCCTATGATA--TC-TTTCC  88

seq1  GTACCGCTCTAGATTGTTGTTACCTTTCAATTGTGCTTGATGGTTCCACT  149
      ||| ||||||||| || |||   ||||||  ||||| ||||  |  ||||
seq2  GTA-CGCTCTAGA-TGGTGT--ACTTTCA--TGTGC-TGAT--TATCACT  129

seq1  GAACTTATTTCACAAATGAGTCAAAATGTGATCTTTGAAAAGTGCCATGC  199
      ||   |||||||| |||||||| ||||||||||||   |||||| |||||
seq2  GA--CTATTTCAC-AATGAGTC-AAATGTGATCTT--GAAAGTG-CATGC  172

seq1  TAGGCAGTTGTAGTCTTCATGCCCATTTCACAGGTGGAGAAACTGAGATC  249
      || |||| ||||||| ||||| |||||||||||   ||||||||||||||
seq2  TA-GCAG-TGTAGTC-TCATG-CCATTTCACAG--TGAGAAACTGAGATC  216

seq1  CAGAGAGATCAGGTCAGGTATCCAGGGTCCTAATGCTGCTGAGAGGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATCAGGTCAGGTATCCAGGGTCCTAATGCTGCTGAGAGGAGGA  266

seq1  GCCAGGAGCGCTGTTTTCCTTTTTTAGCTTTTTGAGACAATGTTTTCCTA  349
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GCCAGGAGCGCTGTTTTCC-TTTTTAGC-TTTTGAGACAATGTTTTCCTA  314

seq1  TGTAGCTCAGGCTGGCCTTGAACTTGCACAAGTTATAACTTAGCCTGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCAGGCTGGCCTTGAACTTGCACAAGTTATAACTTAGCCTGTTG  364

seq1  CCATTGGAGGCCTGTATCCCAATACTTGCTTCTGTTCTTTGATTTGAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAGGCCTGTATCCCAATACTTGCTTCTGTTCTTTGATTTGAAAC  414

seq1  CAGAAAGTCAGAGTCCTATTACAGCTTCATAATATGTCCAAAGCAGGCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTCAGAGTCCTATTACAGCTTCATAATATGTCCAAAGCAGGCCG  464

seq1  TGGGGATCTGAGCCCCAGAACCAGGAACAACAAAAAAGTTCATGGACTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATCTGAGCCCCAGAACCAGGAACAACAAAAAAGTTCATGGACTGA  514

seq1  ATCCATATCATATACCTTCTTCTGCCTAATGAATTGCTATCTATCGGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATCATATACCTTCTTCTGCCTAATGAATTGCTATCTATCGGAAG  564

seq1  AACTAGTCACATTACTAGGAAATTATTATCAGTCACCCATCTAAGATTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTCACATTACTAGGAAATTATTATCAGTCACCCATCTAAGATTGT  614

seq1  ACGCAAAAAACAAATGCACATTCTATGAAGATCTGAATAAAACATACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAAAAACAAATGCACATTCTATGAAGATCTGAATAAAACATACACA  664

seq1  GATACTGTTTTTCTGGGTTGTCATATTTTGTGGGTTTTTTTTATCTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTTTTCTGGGTTGTCATATTTTGTGGGTTTTTTTTATCTTGTT  714

seq1  CATCTGATGACTTGAAATTTCATGCAAGTTCTGGTTCTTAGAGATGGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATGACTTGAAATTTCATGCAAGTTCTGGTTCTTAGAGATGGCTC  764

seq1  CGATAGAAATCACTTGTTTCGAGTGTCTGTTAGTATCTAGAGAGAAAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGAAATCACTTGTTTCGAGTGTCTGTTAGTATCTAGAGAGAAAAGT  814

seq1  ATTAGTGGGGTATATAATCTATCAGCTATTTATTGAGAAATTTACTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGGGGTATATAATCTATCAGCTATTTATTGAGAAATTTACTTTTA  864

seq1  GGAATTGCTTATGTAGTTGTGGAGACCCTATGAGTGCAAAATCTGCAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCTTATGTAGTTGTGGAGACCCTATGAGTGCAAAATCTGCAGGG  914

seq1  TGGCCAACAGGCTAGGGACCCAGAGAAAAGTTGAAGTCACAGTCCTACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACAGGCTAGGGACCCAGAGAAAAGTTGAAGTCACAGTCCTACAT  964

seq1  GGTCCCCTTTTGTTTGGGTTGGTCAGTCAGTTTCTGTCAATATTGTTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTTTTGTTTGGGTTGGTCAGTCAGTTTCTGTCAATATTGTTAAT  1014

seq1  TCCTTTTTGTTTTTGTTTTACAAGACAGTATTTCTCCATGTAGCCCAGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGTTTTTGTTTTACAAGACAGTATTTCTCCATGTAGCCCAGGC  1064

seq1  CATCCTGGAATTC  1112
      |||||||||||||
seq2  CATCCTGGAATTC  1077

seq1: chr14_27831967_27832947
seq2: B6Ng01-196H16.g_68_1060

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCC  50

seq1  TCTGCCTCCCAAGGGCTGGGATTAAAGGCATGTGCCACCACTGCCCGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGGGCTGGGATTAAAGGCATGTGCCACCACTGCCCGGTT  100

seq1  CTCTCTCTCTTTTTCCCCCCAAGATTTTATTTATTTTATATATCTGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTTTCCCCCCAAGATTTTATTTATTTTATATATCTGAGTG  150

seq1  CTGTATCTGCATGTATACCTGCAGGCCAGAAGAGGACATCGGGTCCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTGCATGTATACCTGCAGGCCAGAAGAGGACATCGGGTCCCTCA  200

seq1  TAGATGGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  250

seq1  CTGGAAGAGCAGCCAATGCTCTTAACCACTGAGCCATCTCCACAGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGCAGCCAATGCTCTTAACCACTGAGCCATCTCCACAGCCCTG  300

seq1  AAAAAAAAAATCATCTCTTAAGTGTGAATAAGACCAAAGACAATGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCATCTCTTAAGTGTGAATAAGACCAAAGACAATGAAGTT  350

seq1  CAGATAAATTCAAATGCATTCATTGTGTGGGAAACGCTGCAGAGGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATTCAAATGCATTCATTGTGTGGGAAACGCTGCAGAGGGAACT  400

seq1  TTGGGTGCTGCTTTGTCTATATAAACTCATTTTAGAGATAAAGAAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGCTGCTTTGTCTATATAAACTCATTTTAGAGATAAAGAAGAAGG  450

seq1  GACTGGAGAGGTTGCTCAGCACTGGACTGGAAAGATGGCTGCTCTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAGGTTGCTCAGCACTGGACTGGAAAGATGGCTGCTCTTGCAG  500

seq1  AGGACCCAGGTTCATTTCCCAGCACCCACACGGAGCTGTAC-AACTCT-G  548
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  AGGACCCAGGTTCATTTCCCAGCACCCACACGGAGCTGTACAAACTCTGG  550

seq1  GCTCCAGAGCATCCAACACTCTACTCTAGTCTCCATATAACACACATGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGCATCCAACACTCTACTCTAGTCTCCATATAACACACATGCA  600

seq1  TATTCACACACACACACACACACACACACACATATATACACACACATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACACACACACACACACACACACACACATATATACACACACATTAA  650

seq1  CACACACACACATATACTCACTCACACACATATATATACACATACTCACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATATACTCACTCACACACATATATATACACATACTCACA  700

seq1  CACATATGAATGCTTTCAAACTCTTCTCAAGATTAAGAACTGTAAGTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGAATGCTTTCAAACTCTTCTCAAGATTAAGAACTGTAAGTGCT  750

seq1  GAGAATGTAGCCCTAACGACAGAGCACTTACTTGAAATGTGGCAGACCCT  798
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTAGCTCTAACGACAGAGCACTTACTTGAAATGTGGCAGACCCT  800

seq1  CAGTTTGATCCCCTGTTCCATATATATG-CATACTAAATACTATGTCGAG  847
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGTTTGATCCCCTGTTCCATATATATGCCATACTAAATACTATGTCGAG  850

seq1  TTAGTAAGCTTGATTTTCGTATGAATTGGCCATTCTGAAAC-TATTC-TG  895
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  TTAGTAAGCTTGATTTTCGTATGAATTGGCCATTCTGAAACTTATTCTTG  900

seq1  TACACT-ATAGGTTTGCGCAAG-TCAGTGAAAAC-ATTGAGGAGACTAT-  941
      |||||| ||||||||||||||| ||||||||||| |||||||||||| | 
seq2  TACACTAATAGGTTTGCGCAAGTTCAGTGAAAACAATTGAGGAGACTTTG  950

seq1  GAGCT-GGTTTCTCACAGGTG-TGGAAGT-GTGGGAAAAGGCA  981
      ||||| ||||||||||||||| ||||||| |||||||||||||
seq2  GAGCTGGGTTTCTCACAGGTGTTGGAAGTGGTGGGAAAAGGCA  993