BAC Information

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BAC

Clone NameB6Ng01-196O14
Chromosome14 (Build37)
Map Location 44,764,771 - 44,914,147
singlet/doubletdoublet
Overlap geneEG666647, EG624862, EG666660, EG666667, EG546250
Upstream geneLOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik
Downstream geneEG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196O14.bB6Ng01-196O14.g
ACCGA018922GA018923
length1,1171,167
definitionB6Ng01-196O14.b B6Ng01-196O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,764,771 - 44,765,871)(44,912,990 - 44,914,147)
sequence
gaattctctctgttcatcatctcctatcacaccgcatcctttatactgac
catttctcagaatattcccagtaaacctttgatatcatcttactttaagt
ttagattcagcatgatgagagaaagtgtgtggcatttgtttttttgattt
tggttcatttcatctctttgactgtcttccattcgactccattcttcagc
agatgacataagtggattctgaataacacttcccatttcccaatgttttg
gtctagtaatgtgtttccaggcagattctataatgtggtttttgtgtaca
gtgctgcagtgcacatccttgtatgcaagcacttctactgacatcaatct
tccagctaaatgtttaaatgtaggattgcagcatagaatggcagttctat
ttcaggactttgtgcattctctaaaccaaggttttctccagcagctttgc
tagtttccagtcttagtgaatagtgctcctttcctcacatcctccacacc
attttttgtttgttcccttaattgtgcacatgctgtctggaatgagattg
cacgttggtgtggttttctttaaattttcattccttttatgcctgaaaat
attgaatatggttcattatttattcaccatttcactcctttttggaatca
tctgttcatctaatttaatgtgaacccctgtattactagaattctaccga
gaaacctgtgtccttacctacatcttgatgtggcttctcttaggaatttc
tacctattataataagatctttaattaatagtgatatgactttagtccag
tgtcacatcttggaatctgatttctgttcacatatataaggacccacatg
gccaggcaccatttgataagggtatccttttcttcaatgtaagtttgact
tcctttactagacctcacgtgcctttttctctgtcaaggacaacttcatt
ctgggtgaaaaggtcatgggtgcttggttggaagttcatattacttgtaa
atgaggagttctgatctagtcattaactaaagtttttcttgtagtaacct
gtcacaggaaaacattttccaaagttttacttgagttcagatttgtaaaa
attcatccactaggcat
gaattcatagaagataatgattcctacaggtgagtcccagacacagctga
gacccagcactaggcagggaatgcttgtggccttctaggactttgtacaa
aagtgagagctctagttctatactctctgtttcttaataggagccctccc
ttgaggcatgggtcttggatttgtacctcttagactcaggtttcctaagt
gtgaatattgtccaagaccctccagtctttattcttccaaattcaggatc
ttctgcatagaaaccatttccaccatgctgggaatctcaagcaaccctga
acttctagggttctgacagcagattacaagatctgggatccatgacaaaa
atggaaagagtttataccttttgggtcttctctcctccctaagagggcat
tgccctctccatactgatggttttctggtactacacacatatgagcaacc
atgaggaagttttcctcttctgtgatgtatatggaacactcttggtgtca
gggttttcagaaatattttgagtcttgttgcatgtggctggtctctggat
ttgacctgcctctatttggtacttatggatatacagtggtctctagtctc
gggctgtctggggatcagagaccttgcaggcatcataatatttggaagag
tggcaggcaaatcaaagctagctgggaatcaacatttatgttttgtatgt
ttgtggttcagcatcaggcacacccacctcctgaaagaatgcaatcaatt
gaagaaaaaagtaaggatgttgctgaatgagaacagaaaactgctggtag
agcagtgctgaccaggaggcatcctttggtgaagaaaagagttctgtgat
gagaccagcaagaacatacatcccaagtgcaaagcagcagcaggtaggat
gatgtgtatcagaggcagattgccctcatggctaaccataaacatagaca
atcaaatgtaacagtccaccaacttatccagggcacctcactttctgttc
tcctccaagtgtttaattaaggttgatcatctacaaggctttctctggga
ggtagacttttacaagaaacctgcatgtttagcaggtctaatttttctgg
cctgcttaatctggcagtcacttatggagaataggttgaattaccattca
cactttacatgacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44764771_44765871
seq2: B6Ng01-196O14.b_46_1162

seq1  GAATTCTCTCTGTTCATCATCTCCTGTCACACTACATCCTTTATACTGAC  50
      ||||||||||||||||||||||||| ||||||  ||||||||||||||||
seq2  GAATTCTCTCTGTTCATCATCTCCTATCACACCGCATCCTTTATACTGAC  50

seq1  CATTTCTCAGAATATTCCCAGTAAACCTTTGATATCATCTTAATTTAAGT  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATTTCTCAGAATATTCCCAGTAAACCTTTGATATCATCTTACTTTAAGT  100

seq1  TTAGATTCAGCATGATGAGAGAAAATGTGCAGCATTTGTCCTTTTGATTT  150
      |||||||||||||||||||||||| ||||  ||||||||  |||||||||
seq2  TTAGATTCAGCATGATGAGAGAAAGTGTGTGGCATTTGTTTTTTTGATTT  150

seq1  TGGTTCATTTCATCTCTTTGACTGTCTTCCATTCGACTCCATTCTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTTCATCTCTTTGACTGTCTTCCATTCGACTCCATTCTTCAGC  200

seq1  AGATGACATAAGTGCATTCTGAATAACATTTCCCATTTCCCAATGTTTTG  250
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  AGATGACATAAGTGGATTCTGAATAACACTTCCCATTTCCCAATGTTTTG  250

seq1  GTCTAGTAATGTGTTTCCAGGCATTTTCTACGATGTGGTTTTTGTGTACA  300
      |||||||||||||||||||||||  |||||  ||||||||||||||||||
seq2  GTCTAGTAATGTGTTTCCAGGCAGATTCTATAATGTGGTTTTTGTGTACA  300

seq1  GTGCTGCAGGGCACATCCTTGTATGCAGGCACCT-AACTGACATCAATCT  349
      ||||||||| ||||||||||||||||| |||| |  ||||||||||||||
seq2  GTGCTGCAGTGCACATCCTTGTATGCAAGCACTTCTACTGACATCAATCT  350

seq1  TCCAGGTAAATGTTTAAATGTAGGATTGCAGCATACAAT-GCAGTTCTAT  398
      ||||| ||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TCCAGCTAAATGTTTAAATGTAGGATTGCAGCATAGAATGGCAGTTCTAT  400

seq1  TTCAGGACTTTGAGCATCCTCTAAACCAAGGTTTTCTCCAGCGGCTTTGC  448
      |||||||||||| |||| |||||||||||||||||||||||| |||||||
seq2  TTCAGGACTTTGTGCATTCTCTAAACCAAGGTTTTCTCCAGCAGCTTTGC  450

seq1  TAGTTTCCAGTCTTAGTGAATAGTGCTCCTTTCCTCACATCCTCTACATC  498
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TAGTTTCCAGTCTTAGTGAATAGTGCTCCTTTCCTCACATCCTCCACACC  500

seq1  ATTTGTTGTTTGTTCCCTTAATTGTGCACATGCTGTCTGGAATGAGATTG  548
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTTGTTCCCTTAATTGTGCACATGCTGTCTGGAATGAGATTG  550

seq1  CATGTTGGTGTGGTTTTCTTTAAATTTTCATTCCTTTTATGCCTGAAAAT  598
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGGTGTGGTTTTCTTTAAATTTTCATTCCTTTTATGCCTGAAAAT  600

seq1  ATTTAATGTGGTTCATTATTTATTCACCATTTCACTCCTTTTTGGAATCA  648
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATATGGTTCATTATTTATTCACCATTTCACTCCTTTTTGGAATCA  650

seq1  TCTGTTCATCTCATTTACTGTGAACCCCTGTATTACTAGAATTCTACCCA  698
      ||||||||||| ||||| |||||||||||||||||||||||||||||| |
seq2  TCTGTTCATCTAATTTAATGTGAACCCCTGTATTACTAGAATTCTACCGA  700

seq1  GAAACCTGTGTCCTTACCTACATCTTGCTGTGGCTTCTCTTAGGAATTTC  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAACCTGTGTCCTTACCTACATCTTGATGTGGCTTCTCTTAGGAATTTC  750

seq1  TACCTATTATAATAAGATCTTTAATTAATAGTGATATGACTTTAGTCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTATAATAAGATCTTTAATTAATAGTGATATGACTTTAGTCCAG  800

seq1  TGTCACATCTTGGAATCTGATTTCTGTTCACACATATGAGGACCCACATG  848
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TGTCACATCTTGGAATCTGATTTCTGTTCACATATATAAGGACCCACATG  850

seq1  GCCAGGCACCATTTGGTAAGGGTATCC-TTCCTTCAATGTAAGTTTGACT  897
      ||||||||||||||| ||||||||||| || |||||||||||||||||||
seq2  GCCAGGCACCATTTGATAAGGGTATCCTTTTCTTCAATGTAAGTTTGACT  900

seq1  TCC-TTACTCGTACTCACATGCC-TTTTCTCTGTC-AGGACAAC-TCATT  943
      ||| ||||| |  ||||| |||| ||||||||||| |||||||| |||||
seq2  TCCTTTACTAGACCTCACGTGCCTTTTTCTCTGTCAAGGACAACTTCATT  950

seq1  CTGGGTGAAAAGGTCATGGGTGCTTGGTT-GAAG-TCACA-TAC-TGTAA  989
      ||||||||||||||||||||||||||||| |||| ||| | ||| |||||
seq2  CTGGGTGAAAAGGTCATGGGTGCTTGGTTGGAAGTTCATATTACTTGTAA  1000

seq1  A-GAGGAGTTCTGGCCTAGTCA-TGCCTAAAG-TTTTCTTGTAGT-ACCT  1035
      | |||||||||||  ||||||| |  |||||| |||||||||||| ||||
seq2  ATGAGGAGTTCTGATCTAGTCATTAACTAAAGTTTTTCTTGTAGTAACCT  1050

seq1  GTCAACAGG-AAACATTTTCCAAAGTTTTAC-TGAGTTCAGATTTGTAAA  1083
      ||| ||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GTC-ACAGGAAAACATTTTCCAAAGTTTTACTTGAGTTCAGATTTGTAAA  1099

seq1  AATTCATCCACTAGGCAT  1101
      ||||||||||||||||||
seq2  AATTCATCCACTAGGCAT  1117

seq1: chr14_44912990_44914147
seq2: B6Ng01-196O14.g_67_1233 (reverse)

seq1  TTATGTCATGTAGAGTTGTGATGTGTAA-TCAACTTA-TCTCCCCTAGTG  48
      |||||||||||| || |||||   |||| ||||| || |||||   ||||
seq2  TTATGTCATGTAAAG-TGTGAATGGTAATTCAACCTATTCTCCATAAGTG  49

seq1  AACTG-CAGATTCTAGCAGGGCAGAAAAATT-GGCTTGCTAAACATGCA-  95
       |||| ||||||  |||||| |||||||||| | | ||||||||||||| 
seq2  -ACTGCCAGATT-AAGCAGGCCAGAAAAATTAGACCTGCTAAACATGCAG  97

seq1  GTTTCTTGTAAAAGGCTACCT-CCAGAGAAAGCCTTGTAGATGATCA--C  142
      |||||||||||||| |||||| |||||||||||||||||||||||||  |
seq2  GTTTCTTGTAAAAGTCTACCTCCCAGAGAAAGCCTTGTAGATGATCAACC  147

seq1  CTAAATAAACACTTGGAGAAG-ACAG-AGGTGA-GTG-CCTGGATGAGTT  188
       ||| ||||||||||||| || |||| | |||| ||| ||||||| ||||
seq2  TTAATTAAACACTTGGAGGAGAACAGAAAGTGAGGTGCCCTGGATAAGTT  197

seq1  GGTGGACTGTTACATTGGATTGTCTATGTTTATGGTTAGCCATGAGGGCA  238
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTGGACTGTTACATTTGATTGTCTATGTTTATGGTTAGCCATGAGGGCA  247

seq1  ATCTGCCTCTGATACACATCATCCTACCTGCTGCTGCTTTGCACTTGGGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCTGATACACATCATCCTACCTGCTGCTGCTTTGCACTTGGGA  297

seq1  TGTATGTTCTTGCTGGTCTCATCACAGAACCTCTTTTCTTCACCAAAGGA  338
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTATGTTCTTGCTGGTCTCATCACAGAA-CTCTTTTCTTCACCAAAGGA  346

seq1  TGCCTCTTGGTCAGC-CTGCTCTACCAGCAGCTTTCTGTTCTCATTCAGC  387
      |||||| |||||||| ||||||||||||||| ||||||||||||||||||
seq2  TGCCTCCTGGTCAGCACTGCTCTACCAGCAGTTTTCTGTTCTCATTCAGC  396

seq1  AACATCCTTACTTTTTCCTTCAATTGATTGCATTCTTTCAGGACGTGGGT  437
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AACATCCTTACTTTTTTCTTCAATTGATTGCATTCTTTCAGGAGGTGGGT  446

seq1  GTGCCTGATGCTGAACCACAAAGAAATAAAACATAAATGTTGATCCCCAG  487
      |||||||||||||||||||||| | | ||||||||||||||||| |||||
seq2  GTGCCTGATGCTGAACCACAAACATACAAAACATAAATGTTGATTCCCAG  496

seq1  CTAGCTTTGATTTGCCTGCCACTCTTCCAAATATTATGATGCCTGCAAGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTGATTTGCCTGCCACTCTTCCAAATATTATGATGCCTGCAAGG  546

seq1  GCTCTGATCCCCAGACAGCCCGAGACTAGAGACCACTGTATACACATCAG  587
       |||||||||||||||||||||||||||||||||||||||||  ||| ||
seq2  TCTCTGATCCCCAGACAGCCCGAGACTAGAGACCACTGTATATCCATAAG  596

seq1  TACCAAATAGAGGCAGGTCAAATCCAGAGACCAGCCACATGCAACAAGAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACCAAATAGAGGCAGGTCAAATCCAGAGACCAGCCACATGCAACAAGAC  646

seq1  TCAAAATATTTCTGAAAACCCTGACACCAAGAGTGTTCCACATACATCAC  687
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAAAATATTTCTGAAAACCCTGACACCAAGAGTGTTCCATATACATCAC  696

seq1  AGAAGAGCAAAACTTCCTCATGGTTG-TTATATGTGTGTAGTACCAGAAA  736
      ||||||| |||||||||||||||||| | |||||||||||||||||||||
seq2  AGAAGAGGAAAACTTCCTCATGGTTGCTCATATGTGTGTAGTACCAGAAA  746

seq1  ACCATCAGTATGGAGAGGGCAATGCCCTCTTAGGGAGGAGAGAAGACCCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGTATGGAGAGGGCAATGCCCTCTTAGGGAGGAGAGAAGACCCA  796

seq1  AAAGGTATAAACTCTTTCCATTTTATTGTCATGGATCCCAGATCTTGTAA  836
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  AAAGGTATAAACTCTTTCCATTT--TTGTCATGGATCCCAGATCTTGTAA  844

seq1  TCTGCTGTCAGAACCCTAG-AGGTCAGGGTTGCTTGAGATTCCCAGCATG  885
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  TCTGCTGTCAGAACCCTAGAAGTTCAGGGTTGCTTGAGATTCCCAGCATG  894

seq1  GTGGAAATGGTTTCGATGCAGAAGATCCTGAATTTGGAAGAATAAAGACT  935
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGGAAATGGTTTCTATGCAGAAGATCCTGAATTTGGAAGAATAAAGACT  944

seq1  GGAGGGTCTTGGACAATATTCACACTTAGGAAACCTGAGTCTAAGAGGTA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTCTTGGACAATATTCACACTTAGGAAACCTGAGTCTAAGAGGTA  994

seq1  CAAATCCAAGACCCATGCCTCAAGGGAGGGCTCCTATTAAGAAACAGAGA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAAGACCCATGCCTCAAGGGAGGGCTCCTATTAAGAAACAGAGA  1044

seq1  GTATAGAACTAGAGCTCTTACTTTTGTACAAAGTCCTAGAAGGCCACAAG  1085
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTATAGAACTAGAGCTCTCACTTTTGTACAAAGTCCTAGAAGGCCACAAG  1094

seq1  CATTCCCTGCCTAGTGCTGGGTCTCAGCTGTGTCTGGGACTCACCTGTAG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTGCCTAGTGCTGGGTCTCAGCTGTGTCTGGGACTCACCTGTAG  1144

seq1  GAATCATTATCTTCTATGAATTC  1158
      |||||||||||||||||||||||
seq2  GAATCATTATCTTCTATGAATTC  1167