BAC Information

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BAC

Clone NameB6Ng01-197K22
Chromosome14 (Build37)
Map Location 111,508,256 - 111,642,794
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197K22.bB6Ng01-197K22.g
ACCGA019482GA019483
length1,1341,198
definitionB6Ng01-197K22.b B6Ng01-197K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,508,256 - 111,509,382)(111,641,618 - 111,642,794)
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatcctttatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagccagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgtaggcttgtacaaccactctggaaatcagtctggcggttcctaa
gaaataagtttttatggaaatgatgcaataagactcaatggaaaatagct
ccccaagaggatgctgttaaagtagtagaaaacaacccttccatacattt
tctgtattttcatactaatcatgagttgagaatcactgccttatcacacc
ctctgtttcaatgttctgccaattttctagtaactctatagagacaaaaa
aaaatattaacttaagcctgtaataccatgaaaccaaatgagactttctt
tttctctgtttaaatgaatgtttttcttctatctgtttcccatggtttac
acttcccaacaaataagaatctctaattttcactacaatttataaattat
aacaaaaagggctcaagaaaggttgtataaatatattctaaatgatcata
tctgtgaaaagtatcactctatagcacaagcttgccttaaattcactttc
atattcctgcctcagcccccgaattcttagaatacaggtagatgccacca
tgctcagctcccaattgttgttttatagcataattaattgtattagaaaa
tagtgaatttgaagacccatacaattttatttgatagtaaaaatgtaaaa
gttaggaaacagtattgatttgtggaattgagataggcactaccattttt
cagtcccagaagaaattaaaggaataaactgcctttcttttgtttgaata
acaaatcagattgctaaaaggggaagaaaaaaatcctcaattatgaacca
ggatataatagctatgtctggtggaaaagaatattacagggaaattgata
caatggtgtcaaatacctattatgtaaatataaatagaagccaaagtttt
taaacacccaatcatggtatttactataccaagc

gaattcaaggcccataacttacaggtttttgattgagactagaaaggcag
cccagttctggaaatgcaatccagtggcaggcaatggagtttgaaactgc
ccagggtccaattttaggagtcccaaatgaagacccagttgcacaattgg
gtctaagttctaagagttctacaattaaagaactatatttttctagcaaa
tttttcagttttcatgaagccattacattcatatataagttagacatgct
agaaaaaatttaaaggatcttaaacacattaaactgaatttaatattctt
acaaatgtttctgtattatctttttatacaaaatcatccttttactataa
attatcttctgaaaaataattcatgcatagaaagtaactaaatcatgttg
cctcttgattagactcacttctactttctccaggaactcacaggatatct
actttacaaagtcatactcaccaattaatgtttctcatatgataggaatt
tgaatttattcagtggtccaggttcatcttctctcctcttcttcctattt
ttctgccttgtcctcatccttgctttttctaatacccctcccccacattt
ttgtccttttgtcagaatttcaggttttctgtgttctagaccacctgtat
gcttacctactatgaagacaatctttgtttgccatgtaatttatttagag
gttttcccggaatgatcagtaaacacttgtaaactggcacatggccatga
gatttaagatgctatagaatcaccatattctgattaattatagagaaaga
ggtgcaaattgaaagttttatgaatgtatacaagggtgagtatttagcac
agaaattgtaaaacagacccacactaataactacaactatagctctaatt
cttcctcaggcaactttaaagaggtacaatagcagttagctctcttgatt
ttagcttgagttaatccatgagattcattcctctgacagtgtgaagttac
ttgtttcttttattaaatttgtaccatagacccttcagtacattaacaac
atgttctcttcatcaatagctcacccttggtggtggagattattcattta
agatattttttcctaagaatattttctttattacattcaatgtaatcctg
ttcttggattccctcgaaacccctaattccctcctccttatatcccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111508256_111509382
seq2: B6Ng01-197K22.b_45_1178

seq1  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTTATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTTATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTAA  250

seq1  GAAATAAGTTTTTATGGAAATGATGCAATAAGACTCAATGGAAAATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGTTTTTATGGAAATGATGCAATAAGACTCAATGGAAAATAGCT  300

seq1  CCCCAAGAGGATGCTGTTAAAGTAGTAGAAAACAACCCTTCCATACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGAGGATGCTGTTAAAGTAGTAGAAAACAACCCTTCCATACATTT  350

seq1  TCTGTATTTTCATACTAATCATGAGTTGAGAATCACTGCCTTATCACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTTCATACTAATCATGAGTTGAGAATCACTGCCTTATCACACC  400

seq1  CTCTGTTTCAATGTTCTGCCAATTTTCTAGTAACTCTATAGAGACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCAATGTTCTGCCAATTTTCTAGTAACTCTATAGAGACAAAAA  450

seq1  AAAATATTAACTTAAGCCTGTAATACCATGAAACCAAATGAGACTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAACTTAAGCCTGTAATACCATGAAACCAAATGAGACTTTCTT  500

seq1  TTTCTCTGTTTAAATGAATGTTTTTCTTCTATCTGTTTCCCATGGTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTTTAAATGAATGTTTTTCTTCTATCTGTTTCCCATGGTTTAC  550

seq1  ACTTCCCAACAAATAAGAATCTCTAATTTTCACTACAATTTATAAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAACAAATAAGAATCTCTAATTTTCACTACAATTTATAAATTAT  600

seq1  AACAAAAAGGGCTCAAGAAAGGTTGTATAAATATATTCTAAATGATCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGGGCTCAAGAAAGGTTGTATAAATATATTCTAAATGATCATA  650

seq1  TCTGTGAAAAGTATCACTCTATAGCACAAGCTTGCCTTAAATTCACTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAAAGTATCACTCTATAGCACAAGCTTGCCTTAAATTCACTTTC  700

seq1  ATATTCCTGCCTCAGCCCCCGAATTCTTAGAATACAGGTAGATGCCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTGCCTCAGCCCCCGAATTCTTAGAATACAGGTAGATGCCACCA  750

seq1  TGCTCAGCTCCCAATTGTTGTTTTATAGCATAATTAATTGTATTAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCTCCCAATTGTTGTTTTATAGCATAATTAATTGTATTAGAAAA  800

seq1  TAGTGAATTTGAAGACCCATACAATTTTATTTGATAGTAAAAATGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATTTGAAGACCCATACAATTTTATTTGATAGTAAAAATGTAAAA  850

seq1  GTTAGGAAACAGTATTGATTTGTGGAATTGAGATAGGCACTACCATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAAACAGTATTGATTTGTGGAATTGAGATAGGCACTACCATTTTT  900

seq1  CAGTCCCAGAAGAAATT-AAGGAATAAACTG-CTTTCTTTTGTTTGAATA  948
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CAGTCCCAGAAGAAATTAAAGGAATAAACTGCCTTTCTTTTGTTTGAATA  950

seq1  ACAAATCAGATTGCT-AAAGGGGAAGAAAAAAAT-CTCAATTATGAACCA  996
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  ACAAATCAGATTGCTAAAAGGGGAAGAAAAAAATCCTCAATTATGAACCA  1000

seq1  GGATATAATTAGCTATGTCT-GTGGAAAAGAATATTACAGGGAAATTTGA  1045
      |||||||| ||||||||||| |||||||||||||||||||||||| ||||
seq2  GGATATAA-TAGCTATGTCTGGTGGAAAAGAATATTACAGGGAAA-TTGA  1048

seq1  TAC-ATGGTGTCAAATA-CTATTATGTTAAATAT-AATAGAAGCAAAGTT  1092
      ||| ||||||||||||| |||||||| ||||||| ||||||||| ||  |
seq2  TACAATGGTGTCAAATACCTATTATG-TAAATATAAATAGAAGCCAAAGT  1097

seq1  TTTTAAACA--CAATCATGGTAATTACTATACAAAGC  1127
      |||||||||  ||||||||||| ||||||||| ||||
seq2  TTTTAAACACCCAATCATGGTATTTACTATACCAAGC  1134


seq1: chr14_111641618_111642794
seq2: B6Ng01-197K22.g_66_1263 (reverse)

seq1  ----------------AGGGGATAGGGGGTTTTGGAGGGGAAACCAAGAA  34
                      |||| ||  ||||||| |   ||||| |||||||
seq2  AGGGGATATAAGGAGGAGGGAATTAGGGGTTTCG--AGGGAATCCAAGAA  48

seq1  CAGGGATAACATTTGAAATGTAAATAAAGAAAATA-TCTAAG--AAAAAT  81
      || |||| |||||   ||||| ||||||||||||| ||| ||  ||||||
seq2  CA-GGATTACATT--GAATGT-AATAAAGAAAATATTCTTAGGAAAAAAT  94

seq1  ATCTTAAAATGAATAATCT----CACACAAGGTGAGCTAATGGATGAAGA  127
      ||||| |||||||||||||    |||  | |||||||| || ||||||||
seq2  ATCTT-AAATGAATAATCTCCACCACCAAGGGTGAGCT-ATTGATGAAGA  142

seq1  G-ACATG-TGTTAATGTACTGAAGGGTCTATGGTACATATTTAAT-AAAG  174
      | ||||| ||||||||||||||||||||||||||||| ||||||| ||||
seq2  GAACATGTTGTTAATGTACTGAAGGGTCTATGGTACAAATTTAATAAAAG  192

seq1  AAACAAGT-ACTTCACACTGTCAGA-GAATGAATCTCATGGATTAACTCA  222
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AAACAAGTAACTTCACACTGTCAGAGGAATGAATCTCATGGATTAACTCA  242

seq1  AGCTAAAATCAAGAGAGCTAACTGCTATTGTACCTCCTTAAAG-TGCCTG  271
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  AGCTAAAATCAAGAGAGCTAACTGCTATTGTACCTCTTTAAAGTTGCCTG  292

seq1  AGGAAGAATTAGAGCTATAGTTGTAGTTATTAGTGTGGGTCTGTTTTACA  321
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATTAGAGCTATAGTTGTAGTTATTAGTGTGGGTCTGTTTTACA  342

seq1  ATTTCTGTGCTAAATACTCACCCTTGTATACATTCATAAAACTTTCAATT  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGCTAAATACTCACCCTTGTATACATTCATAAAACTTTCAATT  392

seq1  TGCACCTCTTTCTCTATAATTAATCAGAATATGGTGATTCTATAGCATCT  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCTTTCTCTATAATTAATCAGAATATGGTGATTCTATAGCATCT  442

seq1  TAAATCTCATGGCCATGTGCCAGTTTACAAGTGTTTACTGATCATTCCGG  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCATGGCCATGTGCCAGTTTACAAGTGTTTACTGATCATTCCGG  492

seq1  GAAAACCTCTAAATAAATTACATGGCAAACAAAGATTGTCTTCATAGTAG  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTCTAAATAAATTACATGGCAAACAAAGATTGTCTTCATAGTAG  542

seq1  GTAAGCATACAGGTGGTCTAGAACACAGAAAACCTGAAATTCTGACAAAA  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATACAGGTGGTCTAGAACACAGAAAACCTGAAATTCTGACAAAA  592

seq1  GGACAAAAATGTGGGGGAGGGGTATTAGAAAAAGCAAGGATGAGGACAAG  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAATGTGGGGGAGGGGTATTAGAAAAAGCAAGGATGAGGACAAG  642

seq1  GCAGAAAAATAGGAAGAAGAGGAGAGAAGATGAACCTGGACCACTGAATA  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAATAGGAAGAAGAGGAGAGAAGATGAACCTGGACCACTGAATA  692

seq1  AATTCAAATTCCTATCATATGAGAAACATTAATTGGTGAGTATGACTTTG  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATTCCTATCATATGAGAAACATTAATTGGTGAGTATGACTTTG  742

seq1  TAAAGTAGATATCCTGTGAGTTCCTGGAGAAAGTAGAAGTGAGTCTAATC  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGATATCCTGTGAGTTCCTGGAGAAAGTAGAAGTGAGTCTAATC  792

seq1  AAGAGGCAACATGATTTAGTTACTTTCTATGCATGAATTATTTTTCAGAA  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAACATGATTTAGTTACTTTCTATGCATGAATTATTTTTCAGAA  842

seq1  GATAATTTATAGTAAAAGGATGATTTTGTATAAAAAGATAATACAGAAAC  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTATAGTAAAAGGATGATTTTGTATAAAAAGATAATACAGAAAC  892

seq1  ATTTGTAAGAATATTAAATTCAGTTTAATGTGTTTAAGATCCTTTAAATT  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAGAATATTAAATTCAGTTTAATGTGTTTAAGATCCTTTAAATT  942

seq1  TTTTCTAGCATGTCTAACTTATATATGAATGTAATGGCTTCATGAAAACT  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCATGTCTAACTTATATATGAATGTAATGGCTTCATGAAAACT  992

seq1  GAAAAATTTGCTAGAAAAATATAGTTCTTTAATTGTAGAACTCTTAGAAC  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTTGCTAGAAAAATATAGTTCTTTAATTGTAGAACTCTTAGAAC  1042

seq1  TTAGACCCAATTGTGCAACTGGGTCTTCATTTGGGACTCCTAAAATTGGA  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCCAATTGTGCAACTGGGTCTTCATTTGGGACTCCTAAAATTGGA  1092

seq1  CCCTGGGCAGTTTCAAACTCCATTGCCTGCCACTGGATTGCATTTCCAGA  1121
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCAGTTTCAAACTCCATTGCCTGCCACTGGATTGCATTTCCAGA  1142

seq1  ACTGGGCTGCCTTTCTAGTCTCAATCAAAAACCTGTAAGTTATGGGCCTT  1171
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGCCTTTCTAGTCTCAATCAAAAACCTGTAAGTTATGGGCCTT  1192

seq1  GAATTC  1177
      ||||||
seq2  GAATTC  1198


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