BAC Information

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BAC

Clone NameB6Ng01-197O17
Chromosome14 (Build37)
Map Location 109,381,671 - 109,382,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197O17.bB6Ng01-197O17.g
ACCGA019656GA019657
length1,0371,153
definitionB6Ng01-197O17.b B6Ng01-197O17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccattatttaatgggattatttgaat
ttctggagtccagcttctagagctctttgtatatattggatattattccc
ctatcagacttaggattggtaaaaatcttttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagcagctttgcaatttta
tgaggtcccatttgtcgattcttgaccttacaacacaagccattgctgtt
cagttcaggaatttttcccgtgtccatatttttgaggcttttccccatgt
tctcctctatagatttcaatgtctctggttttatgtggaggtctttgatc
cacttagacttgagcaatgtacaaggagataagaatggatcaattcacat
tctactacatggtaatcaccacttatgccagcaatcatttgttgaaaatg
aaaatgctgtcttttatccactggatggttttagattccttgtcaaagat
caagtgaccataggtgtttgggttcatttttggatcttcaattctattcc
atctatctacctgttggttgctgtaccagtaccatgaagtttttatcaca
attgctctgtagtacagcttgaggtctggcatggtgattttagcagaggt
tcttttattgttgagaatagtttttgttatcctaggtgtttttttttttt
tgttgttgttgttttttgttgttttgttttgttcttttttttgttgttcc
agatgaatttgcaaatttccctttctaactcagtgaagaattgagttgga
attttgatggggattgcattgaatctgtagattgctttctgaaggatagc
cattcttactatattcttgccaatccatgagcatgggagatctttccatc
ttctgagatcttctttggatttctttctcagagacttgaagttcttgtta
tacagatcatttcaccgtccctagtagggtcaccccaagatatttatatt
tacttgtggactattgagaaaaggtgcttgtttctct

gaattcattaaaaattgttatcaagtgccccttgatttttaacttataat
ctttctacatttgaaatgtatttgcacatagacataagaccgtttatttt
taaaagtacctttccaaacccattttggcagaaagtatcagaactagaaa
tagcacatcgagctgccaaagccattctgtgaattcatcaataggacagg
ctgtggcaccaccaatctaccctggaggaagtgagctggcatttggagat
gcctagactaggaatcacaaatatcagggtggccatgtctcagtgtgcag
catcttctctctctgaaaagccatatttttttttcattctataaatccag
actgtcatagagcagaaacaaaaatatatgaatagaaaatattcacattt
atatatttcatatgttttaaaatatgaaataatcttgaaataaaagaaga
tttggtttttaaaatctattccaaacaccttcaaaatctataaatagcta
ttcaaagcattgtaaaagagacctcctttctctaagttggtagaaggtgt
tatattttttctctaaattatttgattatttgcccttgaaattgtcaaaa
taccttccaattaaatgagggtgtttatatgatcagttgtaaatgatgta
ttgtggatgaactcaatgaatacgaaattataaatgtgtatgttggagga
atgattcctaaagtaaagctagaagctgtgtaaaagtcatatcgtagtga
tgatagctaacaaactgaatgacacaaacaggaaagcatatatgtaaaaa
gaagtgttttgtatatattgcatacacacacttagttttacatataaata
tggtaaaactgcccacgtatattgtatatacaatatacataaacacacac
acatatacatgcatacatacatatatatatatgccaatcaccaacagcaa
aagaaatttatttgtgcttgaagttttatggagaaattcttcacactaat
tgaatacccatataattgcattaaaataatggaaaaatgtagaatattta
ggaatattaaatattctaataaaatatgaatttaattctggcaaaattga
ataatccttctattgaatgttgagttattgattacttagctgaattttct
gct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109381671_109382826
seq2: B6Ng01-197O17.g_69_1221

seq1  GAATTCATTAAAAATTGTTATCAAGTGCCCCTTGATTTTTAACTTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAAATTGTTATCAAGTGCCCCTTGATTTTTAACTTATAAT  50

seq1  CTTTCTACATTTGAAATGTATTTGCACATAGACATAAGACCGTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACATTTGAAATGTATTTGCACATAGACATAAGACCGTTTATTTT  100

seq1  TAAAAGTACCTTTCCAAACCCATTTTGGCAGAAAGTATCAGAACTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACCTTTCCAAACCCATTTTGGCAGAAAGTATCAGAACTAGAAA  150

seq1  TAGCACATCGAGCTGCCAAAGCCATTCTGTGAATTCATCAATAGGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATCGAGCTGCCAAAGCCATTCTGTGAATTCATCAATAGGACAGG  200

seq1  CTGTGGCACCACCAATCTACCCTGGAGGAAGTGAGCTGGCATTTGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCACCACCAATCTACCCTGGAGGAAGTGAGCTGGCATTTGGAGAT  250

seq1  GCCTAGACTAGGAATCACAAATATCAGGGTGGCCATGTCTCAGTGTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGACTAGGAATCACAAATATCAGGGTGGCCATGTCTCAGTGTGCAG  300

seq1  CATCTTCTCTCTCTGAAAAGCCATATTTTTTTTTCATTCTATAAATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCTCTCTGAAAAGCCATATTTTTTTTTCATTCTATAAATCCAG  350

seq1  ACTGTCATAGAGCAGAAACAAAAATATATGAATAGAAAATATTCACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATAGAGCAGAAACAAAAATATATGAATAGAAAATATTCACATTT  400

seq1  ATATATTTCATATGTTTTAAAATATGAAATAATCTTGAAATAAAAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCATATGTTTTAAAATATGAAATAATCTTGAAATAAAAGAAGA  450

seq1  TTTGGTTTTTAAAATCTATTCCAAACACCTTCAAAATCTATAAATAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTAAAATCTATTCCAAACACCTTCAAAATCTATAAATAGCTA  500

seq1  TTCAAAGCATTGTAAAAGAGACCTCCTTTCTCTAAGTTGGTAGAAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCATTGTAAAAGAGACCTCCTTTCTCTAAGTTGGTAGAAGGTGT  550

seq1  TATATTTTTTCTCTAAATTATTTGATTATTTGCCCTTGAAATTGTCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTTCTCTAAATTATTTGATTATTTGCCCTTGAAATTGTCAAAA  600

seq1  TACCTTCCAATTAAATGAGGGTGTTTATATGATCAGTTGTAAATGATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCAATTAAATGAGGGTGTTTATATGATCAGTTGTAAATGATGTA  650

seq1  TTGTGGATGAACTCAATGAATACGAAATTATAAATGTGTATGTTGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATGAACTCAATGAATACGAAATTATAAATGTGTATGTTGGAGGA  700

seq1  ATGATTCCTAAAGTAAAGCTAGAAGCTGTGTAAAAGTCATATCGTAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCTAAAGTAAAGCTAGAAGCTGTGTAAAAGTCATATCGTAGTGA  750

seq1  TGATAGCTAACAAACTGAATGACACAAACAGGAAAGCATATATGTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTAACAAACTGAATGACACAAACAGGAAAGCATATATGTAAAAA  800

seq1  GAAGTG-TTTGTATATA-TGCATACACACACTTAGTTTTACATATAAATA  848
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTTGTATATATTGCATACACACACTTAGTTTTACATATAAATA  850

seq1  TGGTAAAACTG-CCACGTATATTGTATATACAATATACATAAACACACAC  897
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAACTGCCCACGTATATTGTATATACAATATACATAAACACACAC  900

seq1  ACATATACATGCATACATACATATATTATATATGCCAATCACCAACAGCA  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATATACATGCATACATACATATA-TATATATGCCAATCACCAACAGCA  949

seq1  AAAGAAATT--ATTGTGCTTGAAGTTTTAT-GAGAAAT--CTCACACT-A  991
      |||||||||   |||||||||||||||||| |||||||   ||||||| |
seq2  AAAGAAATTTATTTGTGCTTGAAGTTTTATGGAGAAATTCTTCACACTAA  999

seq1  TTGAATACACATATATTTTGCA-TAAAATTATTGAAAATGTTAGAATATT  1040
      |||||||| ||||||  ||||| |||||| || |||||   |||||||||
seq2  TTGAATACCCATATA-ATTGCATTAAAATAATGGAAAAATGTAGAATATT  1048

seq1  TA-GAATATTAAATATTCTAATAAAATATTGGAAATTTAATTCTTGGAAA  1089
      || ||||||||||||||||||||||||||    |||||||||| ||| ||
seq2  TAGGAATATTAAATATTCTAATAAAATAT---GAATTTAATTC-TGGCAA  1094

seq1  AATTAAAATAAATACTTCTAATTGAAATGTTTGATGTTATTTTATTTACT  1139
      |||| ||   ||| ||||| |||| |||| |||| ||||  ||  |||||
seq2  AATTGAA--TAATCCTTCT-ATTG-AATG-TTGA-GTTA--TTGATTACT  1136

seq1  TAGTTGATTTTTCTGCT  1156
      ||| ||| |||||||||
seq2  TAGCTGAATTTTCTGCT  1153


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