BAC Information

Click to search

BAC

Clone NameB6Ng01-198B01
Chromosome14 (Build37)
Map Location 46,089,166 - 46,090,266
singlet/doubletsinglet
Overlap genePlekhc1
Upstream geneBC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1
Downstream geneEG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198B01.b
ACCGA019759
length1,134
definitionB6Ng01-198B01.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaatattctccacatttgaggccatatctgacagtctgcatac
tttgctcttactaattaccatagacatttatgtgaccttaaagatagcac
atttgcccacttgaaggtatgaccagaaagtttactactgtgtgttagaa
tacaggacactggtgataggctgcaggtctttgcattgcgtgtccctaca
gatagacttcatcgggtaaatggagtcttcagaagttcagagccacttaa
cactttgagaagcagccacaccagattctgttgctctctgtataaaatct
ctcaggctcggcttgacatcagagcttattatattgttagtattctgagt
tactatgcacatttaaagtcaaccattttatattttaggaaattctaaac
cgaagactgtttcctagctagctagaagggctatgtaactgtccccacac
attctctgttcacacatggaaacagtttcctattcttagatagcgctaaa
gtatcggatcagagctggggagagtggagctggcttcctctttgtcctga
gtggttggaactgtagggcagtgagggttcatttttttccagtaacgtag
aacaaatggcttagttcatccctacagaagacttcatgcatggcctgacc
cttcatgggctgtgcatctgtatgaggccctgttccagtcggtggacacc
aaccaaccgacagacaacagaaaccctgctcattaccgtaaattcccttc
acaccaagggaagcagagaccgagttcttttgtgtgtatacagagactgt
gctcattcgagtaagtctttctgtagggctgtcacagtgatccctggcgc
catggcccagcgtttgtatcctttccagtcccaggacactgtgcttgctt
tgatgtgtgtagggtcttctgattctacattttgtctgtgcacacgtgca
tgcagtatctgtggagaccagaagagggcgaatgaatccaccagaaccca
cagagacagctttgtgagctgtggtgggtgctgggaaatcaaaacctcgg
ttcccacgtgtgtagaactagctaaagtggccttttaggccctgaaaccc
attccctctttttcccccttcccccctctcagcc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46089166_46090266
seq2: B6Ng01-198B01.b_44_1177 (reverse)

seq1  GGCTGA----GGGGGAGGGG---AAAGAGG--ATGG--TTCAGGGCCTAA  39
      ||||||    |||| |||||   |||||||  ||||  ||||||||||||
seq2  GGCTGAGAGGGGGGAAGGGGGAAAAAGAGGGAATGGGTTTCAGGGCCTAA  50

seq1  A---GCACTT--GCT-GCTCT-CAC-CGTGG--ACCGAGG-TTTGATTT-  77
      |    |||||  ||| | ||| ||| |||||  ||||||| |||||||| 
seq2  AAGGCCACTTTAGCTAGTTCTACACACGTGGGAACCGAGGTTTTGATTTC  100

seq1  CCAGCACCCA-CACAGCTCAC--AGCTGTCTCTGTGGG-TCTGGTGGCTT  123
      |||||||||| ||||||||||  ||||||||||||||| |||||||| ||
seq2  CCAGCACCCACCACAGCTCACAAAGCTGTCTCTGTGGGTTCTGGTGGATT  150

seq1  CA-TCGCCCTCTTCTGGTCTCCACAGATACTGCATGCACGTGTGCACAGA  172
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCCCTCTTCTGGTCTCCACAGATACTGCATGCACGTGTGCACAGA  200

seq1  CAAAATGTAG-ATCAG-AGA-CCTACACACATCAAAGCAAGCACAGTGTC  219
      |||||||||| ||||| ||| |||||||||||||||||||||||||||||
seq2  CAAAATGTAGAATCAGAAGACCCTACACACATCAAAGCAAGCACAGTGTC  250

seq1  CTGGGACTGG-AAGGATAC-AACGCTGGGCCATGGCGCCAGGGATCACTG  267
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  CTGGGACTGGAAAGGATACAAACGCTGGGCCATGGCGCCAGGGATCACTG  300

seq1  TGACAGCCCTACAGAAAGACTTACTCGAATGAGCACAGTCTCTGTATACA  317
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCCTACAGAAAGACTTACTCGAATGAGCACAGTCTCTGTATACA  350

seq1  CACAAAAGAACTCGGTCTCTGCTTCCCTTGGTGTGAAGGGAATTTACGGT  367
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAACTCGGTCTCTGCTTCCCTTGGTGTGAAGGGAATTTACGGT  400

seq1  AATGAGCAGGGTTTCTGTTGTCTGTCGGTTGGTTGGTGTCCACCGACTGG  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGGGTTTCTGTTGTCTGTCGGTTGGTTGGTGTCCACCGACTGG  450

seq1  AACAGGGCCTCATACAGATGCACAGCCCATGAAGGGTCAGGCCATGCATG  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCCTCATACAGATGCACAGCCCATGAAGGGTCAGGCCATGCATG  500

seq1  AAGTCTTCTGTAGGGATGAACTAAGCCATTTGTTCTACGTTACTGGAAAA  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCTGTAGGGATGAACTAAGCCATTTGTTCTACGTTACTGGAAAA  550

seq1  AAATGAACCCTCACTGCCCTACAGTTCCAACCACTCAGGACAAAGAGGAA  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACCCTCACTGCCCTACAGTTCCAACCACTCAGGACAAAGAGGAA  600

seq1  GCCAGCTCCACTCTCCCCAGCTCTGATCCGATACTTTAGCGCTATCTAAG  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCACTCTCCCCAGCTCTGATCCGATACTTTAGCGCTATCTAAG  650

seq1  AATAGGAAACTGTTTCCATGTGTGAACAGAGAATGTGTGGGGACAGTTAC  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAACTGTTTCCATGTGTGAACAGAGAATGTGTGGGGACAGTTAC  700

seq1  ATAGCCCTTCTAGCTAGCTAGGAAACAGTCTTCGGTTTAGAATTTCCTAA  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTTCTAGCTAGCTAGGAAACAGTCTTCGGTTTAGAATTTCCTAA  750

seq1  AATATAAAATGGTTGACTTTAAATGTGCATAGTAACTCAGAATACTAACA  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATGGTTGACTTTAAATGTGCATAGTAACTCAGAATACTAACA  800

seq1  ATATAATAAGCTCTGATGTCAAGCCGAGCCTGAGAGATTTTATACAGAGA  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAGCTCTGATGTCAAGCCGAGCCTGAGAGATTTTATACAGAGA  850

seq1  GCAACAGAATCTGGTGTGGCTGCTTCTCAAAGTGTTAAGTGGCTCTGAAC  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAATCTGGTGTGGCTGCTTCTCAAAGTGTTAAGTGGCTCTGAAC  900

seq1  TTCTGAAGACTCCATTTACCCGATGAAGTCTATCTGTAGGGACACGCAAT  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGACTCCATTTACCCGATGAAGTCTATCTGTAGGGACACGCAAT  950

seq1  GCAAAGACCTGCAGCCTATCACCAGTGTCCTGTATTCTAACACACAGTAG  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACCTGCAGCCTATCACCAGTGTCCTGTATTCTAACACACAGTAG  1000

seq1  TAAACTTTCTGGTCATACCTTCAAGTGGGCAAATGTGCTATCTTTAAGGT  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCTGGTCATACCTTCAAGTGGGCAAATGTGCTATCTTTAAGGT  1050

seq1  CACATAAATGTCTATGGTAATTAGTAAGAGCAAAGTATGCAGACTGTCAG  1067
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATGTCTATGGTAATTAGTAAGAGCAAAGTATGCAGACTGTCAG  1100

seq1  ATATGGCCTCAAATGTGGAGAATATTAAGAATTC  1101
      ||||||||||||||||||||||||||||||||||
seq2  ATATGGCCTCAAATGTGGAGAATATTAAGAATTC  1134