BAC Information

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BAC

Clone NameB6Ng01-200K07
Chromosome14 (Build37)
Map Location 29,833,467 - 29,978,145
singlet/doubletdoublet
Overlap geneCacna2d3, Lrtm1
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream genePpia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200K07.bB6Ng01-200K07.g
ACCGA021648GA021649
length1,155553
definitionB6Ng01-200K07.b B6Ng01-200K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,833,467 - 29,834,603)(29,977,593 - 29,978,145)
sequence
gaattcctaatagactcattccaacccatgtccaagataagctcccaata
cttccaactctgaaaatgttggatcttgctgtaagtgaaggaaaactgag
tacaagatggcacctttatgctctgagcatttagctcagtggtagagcac
ttgatgaacaagtataagaccccaggtttagtcctcagcttcagggagaa
aaatccttagacaactccaaagatctcaaaagaatattcaggcaatatgc
cgtaggtccctgtttcaactcaagctggaaatgttataaacattttaact
ctgatcccatttattaaatagtatcaagaaggcaggcatcagggctcatt
tgatagtagtagcctagcaagcacagatctctgagtgagacccccaggac
catgaaattgagcatggtgctacataccaataaccctgatacaacgacta
ttgttttgagtatgtctaaagacagaaagcaggtttctgtggggcttctg
tggagcaactctgtgaaggggcttctgggaggaaaaccagagatgattag
aagaaggttgtatgccccactaaagcactgcacttctcagtaagaagcaa
ggagatgacagaagtctgatcatctatgagaggatggtaaaagtttctgg
aagaaggatacgacttatattgtttgtaacactttttggtaattttttaa
accatcatagaaaaaaaggagaaagaggatcgccacagattgggttatac
ctgcaaagctagatagctgtttgtaagggtattccctagtcaataggacc
acctgaagccacatctgataactgaagtataaatgaattaagaccaagtc
aaaattaaagtcagttcttgggttgtagcaatcacattctgggagctcgg
gaattacaggtgtctagtgacatccatgttggagggcagcacagaacatt
tctaccacccatacaaagcttcaacaggcctaccctccttcctgaagatg
tcctttttaaaactgtgggcatcagcttccttttggtgacctttctaccc
tgcacagcctacacacactgggcctctgacctctccaaggacacccattg
accagaatgacttttccccctcacttgttccatgtgatatatcagactct
tacac
gaattcaccggcttctcatcttcacacgagtcatgcacagccattatctt
ggaggtgcagagcgaaaaatcattatgagtggaatttgttccatttcgta
agcaatcacttgcgctttgcagttgagtcttaatcagctcaggaaagcta
cccaacttgccctgtagggcagaggcagcatcaaacccaggaagcatcca
caccctgataaccccccaccagggtagtttgcactgagcttgggcgacac
acagaaggaaagcaaagaaatctttccaaaaacagtgggaatgtgaccat
cttaaaataatgagaaattcattacccagccccctccccctgcccccagt
ctctcccaatttgctgggcaatgcaattcagtaggcaatctgcaggaact
ccaaacctttttacttgctttggcaaataaacctgtatccctcctcctcc
cccccccctaagtccaacttgcaaaaaatgcttgggtttgaacaattgca
cattggttcatttcccatcaaggaaaagaccttggcattgaggatcattt
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29833467_29834603
seq2: B6Ng01-200K07.b_49_1203

seq1  GAATTCCTAATAGACTCATTCCAACCCATGTCCAAGATAAGCTCCCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAGACTCATTCCAACCCATGTCCAAGATAAGCTCCCAATA  50

seq1  CTTCCAACTCTGAAAATGTTGGATCTTGCTGTAAGTGAAGGAAAACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACTCTGAAAATGTTGGATCTTGCTGTAAGTGAAGGAAAACTGAG  100

seq1  TACAAGATGGCACCTTTATGCTCTGAGCATTTAGCTCAGTGGTAGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATGGCACCTTTATGCTCTGAGCATTTAGCTCAGTGGTAGAGCAC  150

seq1  TTGATGAACAAGTATAAGACCCCAGGTTTAGTCCTCAGCTTCAGGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAACAAGTATAAGACCCCAGGTTTAGTCCTCAGCTTCAGGGAGAA  200

seq1  AAATCCTTAGACAACTCCAAAGATCTCAAAAGAATATTCAGGCAATATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTAGACAACTCCAAAGATCTCAAAAGAATATTCAGGCAATATGC  250

seq1  CGTAGGTCCCTGTTTCAACTCAAGCTGGAAATGTTATAAACATTTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTCCCTGTTTCAACTCAAGCTGGAAATGTTATAAACATTTTAACT  300

seq1  CTGATCCCATTTATTAAATAGTATCAAGAAGGCAGGCATCAGGGCTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCATTTATTAAATAGTATCAAGAAGGCAGGCATCAGGGCTCATT  350

seq1  TGATAGTAGTAGCCTAGCAAGCACAGATCTCTGAGTGAGACCCCCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAGTAGCCTAGCAAGCACAGATCTCTGAGTGAGACCCCCAGGAC  400

seq1  CATGAAATTGAGCATGGTGCTACATACCAATAACCCTGATACAACGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATTGAGCATGGTGCTACATACCAATAACCCTGATACAACGACTA  450

seq1  TTGTTTTGAGTATGTCTAAAGACAGAAAGCAGGTTTCTGTGGGGCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGTATGTCTAAAGACAGAAAGCAGGTTTCTGTGGGGCTTCTG  500

seq1  TGGAGCAACTCTGTGAAGGGGCTTCTGGGAGGAAAACCAGAGATGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAACTCTGTGAAGGGGCTTCTGGGAGGAAAACCAGAGATGATTAG  550

seq1  AAGAAGGTTGTATGCCCCACTAAAGCACTGCACTTCTCAGTAAGAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTTGTATGCCCCACTAAAGCACTGCACTTCTCAGTAAGAAGCAA  600

seq1  GGAGATGACAGAAGTCTGATCATCTATGAGAGGATGGTAAAAGTTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACAGAAGTCTGATCATCTATGAGAGGATGGTAAAAGTTTCTGG  650

seq1  AAGAAGGATACGACTTATATTGTTTGTAACACTTTTTGGTAATTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGATACGACTTATATTGTTTGTAACACTTTTTGGTAATTTTTTAA  700

seq1  ACCATCATAGAAAAAAAGGAGAAAGAGGATCGCCACAGATTGGGTTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATAGAAAAAAAGGAGAAAGAGGATCGCCACAGATTGGGTTATAC  750

seq1  CTGCAAAGCTAGATAGCTGTTTGTAAGGGTATTCCCTAGTCAATAGGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGCTAGATAGCTGTTTGTAAGGGTATTCCCTAGTCAATAGGACC  800

seq1  ACCTGAAGCCACATCTGATAACTGAAGTATAAATGAATTAAGACCAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGCCACATCTGATAACTGAAGTATAAATGAATTAAGACCAAGTC  850

seq1  AAAATTAAAAGTCAGTTCTTGGGTTGTAGCAATCACATTCTGGGAGCTCG  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATT-AAAGTCAGTTCTTGGGTTGTAGCAATCACATTCTGGGAGCTCG  899

seq1  GGAATTACAGGTGTCTAGTGACATCCATGTTGGAGGGCAGGCACAGAACA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAATTACAGGTGTCTAGTGACATCCATGTTGGAGGGCA-GCACAGAACA  948

seq1  TTTCTACCA-CCATACAAAGC-TCAACAGGCCTACCCTCC-TCCTG-AGA  996
      ||||||||| ||||||||||| |||||||||||||||||| ||||| |||
seq2  TTTCTACCACCCATACAAAGCTTCAACAGGCCTACCCTCCTTCCTGAAGA  998

seq1  GGTCC-TTTTAGAACTGTGGGCATCAGC-TCCTTTT-GTGACCTTTCTAC  1043
       |||| ||||| |||||||||||||||| ||||||| |||||||||||||
seq2  TGTCCTTTTTAAAACTGTGGGCATCAGCTTCCTTTTGGTGACCTTTCTAC  1048

seq1  CTGCCACAGCCCACACAC-CTGG--CTCTGACCTC-CAAAGGACA--CAT  1087
      |   ||||||| |||||| ||||  |||||||||| | |||||||  |||
seq2  CCTGCACAGCCTACACACACTGGGCCTCTGACCTCTCCAAGGACACCCAT  1098

seq1  GACCCAGAATGACTTT--CCCCTCAC-TGTTTCATGTG--ATATCAG--T  1130
         |||||||||||||  |||||||| |||| ||||||  |||||||  |
seq2  TGACCAGAATGACTTTTCCCCCTCACTTGTTCCATGTGATATATCAGACT  1148

seq1  CTTACAC  1137
      |||||||
seq2  CTTACAC  1155

seq1: chr14_29977593_29978145
seq2: B6Ng01-200K07.g_66_618 (reverse)

seq1  CCCAAATGACTCCTCAATGGCCAAGGTGCTATTCCTAGATGGGAAACTGA  50
      ||||||||| |||||||| |||||||| || ||||| ||||||||| || 
seq2  CCCAAATGA-TCCTCAAT-GCCAAGGT-CTTTTCCTTGATGGGAAA-TG-  45

seq1  AACAAATGTGCAATTGATCAAACCCAAGGCATTTTCTGCAAGTTGGACTT  100
      ||| |||||||||||| |||||||||| ||||||| ||||||||||||||
seq2  AACCAATGTGCAATTGTTCAAACCCAA-GCATTTTTTGCAAGTTGGACTT  94

seq1  AGTGGGGGGTGAGGAGGAGGGATACAGGTCTAATTTGCCAACGCAAGTAA  150
      || |||||| ||||||||||||||||||| | ||||||||| ||||||||
seq2  AGGGGGGGGGGAGGAGGAGGGATACAGGT-TTATTTGCCAAAGCAAGTAA  143

seq1  ATAGGTTTGGAGTTCCTGCAGATTGCCTACTGAATTGCATTG-CCAGCAA  199
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGGTTTGGAGTTCCTGCAGATTGCCTACTGAATTGCATTGCCCAGCAA  193

seq1  A-TGGGAGAGACTGGGGGCAGGGGGAGGGGGCTGGGTAATGAA-TTCTCA  247
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGGGAGAGACTGGGGGCAGGGGGAGGGGGCTGGGTAATGAATTTCTCA  243

seq1  TTATTTT-AGATGGTCACATTCCCACTGTTTTTGG-AAGATTTCTTTGCT  295
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TTATTTTAAGATGGTCACATTCCCACTGTTTTTGGAAAGATTTCTTTGCT  293

seq1  TTCCTTCTGTGTGTCG-CCAAGCTCAGTGCAAACTACCCTGGT-GGGGGT  343
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TTCCTTCTGTGTGTCGCCCAAGCTCAGTGCAAACTACCCTGGTGGGGGGT  343

seq1  TATCAGGGTGTGGATGCTTCCTGGGTTTGATGCTGCCTCTGCCCTACAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGTGTGGATGCTTCCTGGGTTTGATGCTGCCTCTGCCCTACAGG  393

seq1  GCAAGTTGGGTAGCTTTCCTGAGCTGATTAAGACTCAACTGCAAAGCGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGGGTAGCTTTCCTGAGCTGATTAAGACTCAACTGCAAAGCGCA  443

seq1  AGTGATTGCTTACGAAATGGAACAAATTCCACTCATAATGATTTTTCGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGCTTACGAAATGGAACAAATTCCACTCATAATGATTTTTCGCT  493

seq1  CTGCACCTCCAAGATAATGGCTGTGCATGACTCGTGTGAAGATGAGAAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTCCAAGATAATGGCTGTGCATGACTCGTGTGAAGATGAGAAGC  543

seq1  CGGTGAATTC  553
      ||||||||||
seq2  CGGTGAATTC  553