BAC Information

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BAC

Clone NameB6Ng01-200L09
Chromosome14 (Build37)
Map Location 102,560,590 - 102,614,865
singlet/doubletdoublet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L09.bB6Ng01-200L09.g
ACCGA021698GA021699
length1,0611,160
definitionB6Ng01-200L09.b B6Ng01-200L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,560,590 - 102,561,639)(102,613,705 - 102,614,865)
sequence
gaattcttacttacatgaaagtagttttatttttattatgtgccaatatt
tacagacattgttttttttttttttggcatacaactgattctcatcagtc
atgatgctgtattctgtaacttcagctggaagagtgaattagtaagtact
aggtcatagttcctggggaaaatgcagagttggctgcccaatattacttt
gtggcaatattctcttcaactgattaatatataactttcttctatgtgtg
cttctgcttaaatgttaattaatatgcatgtgtgcatgtgtatgtgtgtg
tgtgtgtatgtgtgtgcgtgtgcgtgtgtgttcatgcaccatagtgttca
tgtggatctagagaacaacttttctgagtttcctggatggatgtgcagtg
tcagtctcctgttccatggctagggatgtgtgcatcaggcaattcaaacc
attagtcactctgtgcatgtcactgaacaatgaacagagttcatctagag
tatagcatgtatcaattgatcattctattttatggctgagtaaaactcca
ttcctccttaaaagctgttcacatggtcatgttaaggttcaggggacact
tacaaaaggtcctggtctcatatagaagggattgagaaaagacaaagtac
agctgagactgtctataaagacacagtacatgtcagagggtgaaggagtg
gagctagaacaaagaaaagcatttaatagttctaaaagcaccactgtaca
aatgattacggctttgtttgtttagttttgagacagtgtcatgcatccca
gcctagttttgagctgactggctacagctggagctgagcttgggtttttt
tctgaacttccaaggaagactgtaagagcagttgtccaccagaaggacaa
ttaaaatcaaaacaaacaaaattaaccaaacagaactagtatccttcttt
ccttaagatttaaccctttggcctgggttaatatactttgttaatcacct
acacctgtaaaacacctcctcagaagtttgtccttaaaaagccttttggg
aaattttcatg
gaattcaggaaaggaagcaatagcatgtgggcatgtggggtgaggactta
ttagggatggttcaaagagaatatgagagagcaagaagcagaaggaaaat
aataaggttcccctgtctgcctgttgtagctgatgatgtagtgatggcat
acagctgaaccgagtcacagccctgctgtgtctttcatgttccctcattc
agaagtacacagaactaaagtggaagtggaaggtcagcccggtggttcaa
ccccttgaagcattgagaagttagctgtgttccatcacatgaatagtcca
caaaataatcacatgtttgtttcttaagataagcagcagagttttaggaa
aaatttcccttttagagtattggttcccaggtgttgaactgatttctggt
ttccagttggggaaatgaccacttgggaattccacttttggaaatgtctt
agcatgggatttggtctatcatgcttgatattatttcttcagttgttggg
acaatacagataatttttattaaattattaaaattcatccaaatcaatta
tttattatatcagttactataatattttgtgagaaattaaatgttttact
catgaaatgtgcttttctcttatgtttctattttttatcatttttatcac
aagccaagtcattcaagccaagtcattatagccatatattctgtgcatgc
ttgtacacactaatgaatgcacatttattattatttaccagtctcctttt
gttgttttgtttttgtgttttttcatctgcctatcatgaacaaatgcaca
atttgcctaattatactacttaggatatgtcaggatccatgactttgtga
tgaagacaaaagatcgcccattgtttgctgagagaccagaaactccatct
agtgtccatgttttttcagccatcttttgactttctgtgatttattctcc
tctgctgggttccttgagaacaacacctttaaaaattcccacaaagctct
aatgcatttgttcttctgaggaagtcttggacaaatttacgcaagactgt
atggcagtaatatgattccaaaattaaagttttcattacaaaggaggaat
tattcacttacattcacgcttgaattctactgtcacatcttatgccatat
tttaaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102560590_102561639
seq2: B6Ng01-200L09.b_46_1106

seq1  GAATTCTTACTTACATGAAAGTAGTTTTATTTTTATTATGTGCCAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTACATGAAAGTAGTTTTATTTTTATTATGTGCCAATATT  50

seq1  TACAGACATTGTTTTTTTTTTTTTTGGCATACAACTGATTCTCATCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACATTGTTTTTTTTTTTTTTGGCATACAACTGATTCTCATCAGTC  100

seq1  ATGATGCTGTATTCTGTAACTTCAGCTGGAAGAGTGAATTAGTAAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTGTATTCTGTAACTTCAGCTGGAAGAGTGAATTAGTAAGTACT  150

seq1  AGGTCATAGTTCCTGGGGAAAATGCAGAGTTGGCTGCCCAATATTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATAGTTCCTGGGGAAAATGCAGAGTTGGCTGCCCAATATTACTTT  200

seq1  GTGGCAATATTCTCTTCAACTGATTAATATATAACTTTCTTCTATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATATTCTCTTCAACTGATTAATATATAACTTTCTTCTATGTGTG  250

seq1  CTTCTGCTTAAATGTTAATTAATATGCATGTGTGCATGTGTATGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTAAATGTTAATTAATATGCATGTGTGCATGTGTATGTGTGTG  300

seq1  TGTGTGTATGTGTGTGCGTGTGCGTGTGTGTTCATGCACCATAGTGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGCGTGTGCGTGTGTGTTCATGCACCATAGTGTTCA  350

seq1  TGTGGATCTAGAGAACAACTTTTCTGAGTTTCCTGGATGGATGTGCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCTAGAGAACAACTTTTCTGAGTTTCCTGGATGGATGTGCAGTG  400

seq1  TCAGTCTCCTGTTCCATGGCTAGGGATGTGTGCATCAGGCAATTCAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCTGTTCCATGGCTAGGGATGTGTGCATCAGGCAATTCAAACC  450

seq1  ATTAGTCACTCTGTGCATGTCACTGAACAATGAACAGAGTTCATCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCACTCTGTGCATGTCACTGAACAATGAACAGAGTTCATCTAGAG  500

seq1  TATAGCATGTATCAATTGATCATTCTATTTTATGGCTGAGTAAAACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATGTATCAATTGATCATTCTATTTTATGGCTGAGTAAAACTCCA  550

seq1  TTCCTCCTTAAAAGCTGTTCACATGGTCATGTTAAGGTTCAGGGGACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTAAAAGCTGTTCACATGGTCATGTTAAGGTTCAGGGGACACT  600

seq1  TACAAAAGGTCCTGGTCTCATATAGAAGGGATTGAGAAAAGACAAAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGTCCTGGTCTCATATAGAAGGGATTGAGAAAAGACAAAGTAC  650

seq1  AGCTGAGACTGTCTATAAAGACACAGTACATGTCAGAGGGTGAAGGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGACTGTCTATAAAGACACAGTACATGTCAGAGGGTGAAGGAGTG  700

seq1  GAGCTAGAACAAAGAAAAGCATTTAATAGTTCTAAAAGCACCACTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAACAAAGAAAAGCATTTAATAGTTCTAAAAGCACCACTGTACA  750

seq1  AATGATTACGGCTTTGTTTGTTTAGTTTTGAGACAGTGTCATGCATCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTACGGCTTTGTTTGTTTAGTTTTGAGACAGTGTCATGCATCCCA  800

seq1  GCCTAGTTTTGAGCTGACTGGCTACAGCTGGAGCTGAGCTTGGGTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTTTGAGCTGACTGGCTACAGCTGGAGCTGAGCTTGGGTTTTTT  850

seq1  TCTGAACTTCC-AGGAAGACTGTAAGAGCAG-TGTCCACCAGAAGGACAA  898
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TCTGAACTTCCAAGGAAGACTGTAAGAGCAGTTGTCCACCAGAAGGACAA  900

seq1  TTAAAA-CAAAACAAAACAAAAATAAACAAACAGAACTAGTATCCT--CT  945
      |||||| |||||| |||||||| ||| |||||||||||||||||||   |
seq2  TTAAAATCAAAAC-AAACAAAATTAACCAAACAGAACTAGTATCCTTCTT  949

seq1  TCCTTAAGAATTAACCCTTTGG-CTGTGTTAATA-ACTTTGTTAATCACC  993
      ||||||||| |||||||||||| ||| ||||||| |||||||||||||||
seq2  TCCTTAAGATTTAACCCTTTGGCCTGGGTTAATATACTTTGTTAATCACC  999

seq1  TACA-CAGTAAAACA-CTCCTCAGAAAAGTTGTCCT--AAAAG-CTTTTG  1038
      |||| | |||||||| |||||||| ||  |||||||  ||||| ||||||
seq2  TACACCTGTAAAACACCTCCTCAG-AAGTTTGTCCTTAAAAAGCCTTTTG  1048

seq1  GGAAA-TTTCATG  1050
      ||||| |||||||
seq2  GGAAATTTTCATG  1061

seq1: chr14_102613705_102614865
seq2: B6Ng01-200L09.g_68_1227 (reverse)

seq1  TGGCTTTAAAATATGGCAATAGATTTGTTGGCCGTTGAAGAAATTCAGGG  50
      ||||||||||||||||||  ||||    || | ||   |||| |  || |
seq2  TGGCTTTAAAATATGGCATAAGAT---GTGACAGT---AGAATTCAAGCG  44

seq1  TG-ATGGTAGTG-ATATATCTTCCTTTGTATTGAAAACTTTAATTTT-GA  97
      || |||  |||| |||  || ||||||||| |||||||||||||||| ||
seq2  TGAATGTAAGTGAATAATTCCTCCTTTGTAATGAAAACTTTAATTTTGGA  94

seq1  ATCCAATATACTG-CATACAGTCTTGCGTAAATATGT-CAAGACTTCCTC  145
      |||  || ||||| ||||||||||||||||||| ||| ||||||||||||
seq2  ATCATAT-TACTGCCATACAGTCTTGCGTAAATTTGTCCAAGACTTCCTC  143

seq1  AGA--GACAAATGCATTAGAGCTTTGTGGGAATTTTTAAAGGTGTTGTCT  193
      |||   ||||||||||||||||||||||||||||||||||||||||||  
seq2  AGAAGAACAAATGCATTAGAGCTTTGTGGGAATTTTTAAAGGTGTTGTTC  193

seq1  TCAAGGAA-CCAGCAGAGGAGAAATAAATCACAGAAAGTCAAAAGATGGC  242
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TCAAGGAACCCAGCAGAGGAG-AATAAATCACAGAAAGTCAAAAGATGGC  242

seq1  TGAAAAAACATGGACACTAGATGGAGTTTCTGGTCTCTCAGCAAACAATG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAACATGGACACTAGATGGAGTTTCTGGTCTCTCAGCAAACAATG  292

seq1  GGCGATCTTTTGTCTTCATCACAAAGTCATGGATCCTGACATAATCCTAA  342
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCGATCTTTTGTCTTCATCACAAAGTCATGGATCCTGACAT-ATCCTAA  341

seq1  GTAGTATAATTAGGCAAATTGTGCATTTGTTCATGATAGGCAGATGAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATAATTAGGCAAATTGTGCATTTGTTCATGATAGGCAGATGAAAA  391

seq1  AACACAAAAACAAAACAACAAAAGGAGACTGGTAAATAATAATAAATGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAAACAAAACAACAAAAGGAGACTGGTAAATAATAATAAATGTG  441

seq1  CATTCATTAGTGTGTACAAGCATGCACAGAATATATGGCTATAATGACTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTAGTGTGTACAAGCATGCACAGAATATATGGCTATAATGACTT  491

seq1  GGCTTGAATGACTTGGCTTGTGATAAAAATGATAAAAAATAGAAACATAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAATGACTTGGCTTGTGATAAAAATGATAAAAAATAGAAACATAA  541

seq1  GAGAAAAGCACATTTCATGAGTAAAACATTTAATTTCTCACAAAATATTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCACATTTCATGAGTAAAACATTTAATTTCTCACAAAATATTA  591

seq1  TAGTAACTGATATAATAAATAATTGATTTGGATGAATTTTAATAATTTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACTGATATAATAAATAATTGATTTGGATGAATTTTAATAATTTAA  641

seq1  TAAAAATTATCTGTATTGTCCCAACAACTGAAGAAATAATATCAAGCATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATCTGTATTGTCCCAACAACTGAAGAAATAATATCAAGCATG  691

seq1  ATAGACCAAATCCCATGCTAAGACATTTCCAAAAGTGGAATTCCCAAGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAAATCCCATGCTAAGACATTTCCAAAAGTGGAATTCCCAAGTG  741

seq1  GTCATTTCCCCAACTGGAAACCAGAAATCAGTTCAACACCTGGGAACCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCCCCAACTGGAAACCAGAAATCAGTTCAACACCTGGGAACCAA  791

seq1  TACTCTAAAAGGGAAATTTTTCCTAAAACTCTGCTGCTTATCTTAAGAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAAAAGGGAAATTTTTCCTAAAACTCTGCTGCTTATCTTAAGAAA  841

seq1  CAAACATGTGATTATTTTGTGGACTATTCATGTGATGGAACACAGCTAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTGATTATTTTGTGGACTATTCATGTGATGGAACACAGCTAAC  891

seq1  TTCTCAATGCTTCAAGGGGTTGAACCACCGGGCTGACCTTCCACTTCCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATGCTTCAAGGGGTTGAACCACCGGGCTGACCTTCCACTTCCAC  941

seq1  TTTAGTTCTGTGTACTTCTGAATGAGGGAACATGAAAGACACAGCAGGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTGTGTACTTCTGAATGAGGGAACATGAAAGACACAGCAGGGC  991

seq1  TGTGACTCGGTTCAGCTGTATGCCATCACTACATCATCAGCTACAACAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCGGTTCAGCTGTATGCCATCACTACATCATCAGCTACAACAGG  1041

seq1  CAGACAGGGGAACCTTATTATTTTCCTTCTGCTTCTTGCTCTCTCATATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGGAACCTTATTATTTTCCTTCTGCTTCTTGCTCTCTCATATT  1091

seq1  CTCTTTGAACCATCCCTAATAAGTCCTCACCCCACATGCCCACATGCTAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAACCATCCCTAATAAGTCCTCACCCCACATGCCCACATGCTAT  1141

seq1  TGCTTCCTTTCCTGAATTC  1161
      |||||||||||||||||||
seq2  TGCTTCCTTTCCTGAATTC  1160