BAC Information

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BAC

Clone NameB6Ng01-201M18
Chromosome14 (Build37)
Map Location 85,536,278 - 85,689,897
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301, EG629815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201M18.bB6Ng01-201M18.g
ACCGA022468GA022469
length1,0711,115
definitionB6Ng01-201M18.b B6Ng01-201M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,536,278 - 85,537,360)(85,688,762 - 85,689,897)
sequence
gaattccaagaagtgcttgatgacaggagcctggtatagatatctcctga
gaggttctactagagccttacccatagagatggggatacttgtagacaac
catcagactgagcgtcgggactccaatagaggagttaggagaaggactga
aggagctgaaggggtttgcaaccccataggaggaacaacaatattaacca
atcagaccccccaaagctaaccaccaaccatagagtactcaaggagggac
ccatggctccagctgcttatgtagctgaggatggccttgtcagatatcag
tgtgaggagaggcccttggttctgtggagtctccatgctcccacttaagg
aaatacagtagtgggagggggttgagaagcatcctcatagaggcaggggg
agggcgcaagagataggagctttgtggaggaaaaactgggaagggagata
acatttcaaatgtaaataaataaaataaccaatttacaaaaaataaaaag
cttcacctggaaaccgaaatcatatctttgtgtttcaggggtgcagatta
aaacccacaccatttttactacagagacaactcaagaggtgttgaaattt
tttatttcattatcacgagtttctgtttaaaagacctccttgataataga
aaaagaaccatatgacaactagtaaacgtttaaatcagataagtccttac
tacaccgatagtgcttgagttagcaaagtcctggaggtgctcaagttttt
ggagaaacaatatgctcttctaggttcaagttatacatggaggttgtcat
agtcacccacagagacacagcatgatgaaagcaatactcctacaagacgc
aagcattaaccttattcaaaagtggcacatgtctcaagggagtactacaa
gcaactaaaggatcctgagcataggaggaacggtcttctctaggaagagc
actccatttgtttatcatacgaaatggtcaggcctgaaaacacatacagt
aacattatacggaccgacattgtatttaggatatgcatatgtgtgtatga
accaaagttataaaaaaaaaa

gaattccactttctatgaaaataaatgatagttttcttaaaaagtgaagt
gactaattcaagcagatctcagttgttttacatctgagcatatgtctaag
aaccactgaatacaagagtttgagatagcaactatttgatctgaaatagc
atttttcatttagaaagcaatatgtaagaaaggtattttcataagtgttt
caaactatattttgctcagttttataaatcagaatttaacttctcgcttt
tctgtatattatgtagggagcagctattggacgtattttggagaaattat
gttgaggaatgtaggtggtatttaaaatagcattcaggcaggagtgggtg
catctctgactcttacccgctcttgggaatcttttcttcccgttgagtta
cctttcttgtctggcctccatatgagggtttttgcctttcattgttgtat
cttgttttaaaataattatattctttattaatttgaaataattacatcca
ttgtttattataacctaaaaccatttccttatccacaatccccgctgcca
aatcaaaacacagtattttccttcgatttttttttggataaccaattact
tgacttcagtaaaccatggaaggacagtgtggatctcctttattactgag
atgaaaccaacttgccatacttaataatgtgcctgatttatttgtataga
gaatgtggttgcttatcagtatgaattctagcagacatgctgaaacgact
gtgcagtttaatttttttatattttcaatgattctaattattacaaagac
tgaattctttatctccagtaggcaattaatgagctgtattcaacaagtca
aaaatcccatcaactttgggagcattcagatattctttttttgttataaa
gagcacccttagagattgctgttccatttctttcatttttatcctttaac
tacagaggatagacatgtgacttagactaaaggatttcccactaagttga
tttctttgactgcatttatttatgtatgtgaaaataattgcgtactgacc
tttgttagtatgctgtggaaagaccatgacatgcactcttttatggaaga
ctgtattgggctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85536278_85537360
seq2: B6Ng01-201M18.b_47_1117

seq1  GAATTCCAAGAAGTGCTTGATGACAGGAGCCTGGTATAGATATCTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAGTGCTTGATGACAGGAGCCTGGTATAGATATCTCCTGA  50

seq1  GAGGTTCTACTAGAGCCTTACCCATAGAGATGGGGATACTTGTAGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTACTAGAGCCTTACCCATAGAGATGGGGATACTTGTAGACAAC  100

seq1  CATCAGACTGAGCGTCGGGACTCCAATAGAGGAGTTAGGAGAAGGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACTGAGCGTCGGGACTCCAATAGAGGAGTTAGGAGAAGGACTGA  150

seq1  AGGAGCTGAAGGGGTTTGCAACCCCATAGGAGGAACAACAATATTAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAAGGGGTTTGCAACCCCATAGGAGGAACAACAATATTAACCA  200

seq1  ATCAGACCCCCCAAAGCTAACCACCAACCATAGAGTACTCAAGGAGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCCCCCAAAGCTAACCACCAACCATAGAGTACTCAAGGAGGGAC  250

seq1  CCATGGCTCCAGCTGCTTATGTAGCTGAGGATGGCCTTGTCAGATATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCCAGCTGCTTATGTAGCTGAGGATGGCCTTGTCAGATATCAG  300

seq1  TGTGAGGAGAGGCCCTTGGTTCTGTGGAGTCTCCATGCTCCCACTTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAGAGGCCCTTGGTTCTGTGGAGTCTCCATGCTCCCACTTAAGG  350

seq1  AAATACAGTAGTGGGAGGGGGTTGAGAAGCATCCTCATAGAGGCAGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTAGTGGGAGGGGGTTGAGAAGCATCCTCATAGAGGCAGGGGG  400

seq1  AGGGCGCAAGAGATAGGAGCTTTGTGGAGGAAAAACTGGGAAGGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGCAAGAGATAGGAGCTTTGTGGAGGAAAAACTGGGAAGGGAGATA  450

seq1  ACATTTCAAATGTAAATAAATAAAATAACCAATTTACAAAAAATAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAATGTAAATAAATAAAATAACCAATTTACAAAAAATAAAAAG  500

seq1  CTTCACCTGGAAACCGAAATCATATCTTTGTGTTTCAGGGGTGCAGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGGAAACCGAAATCATATCTTTGTGTTTCAGGGGTGCAGATTA  550

seq1  AAACCCACACCATTTTTACTACAGAGACAACTCAAGAGGTGTTGAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACACCATTTTTACTACAGAGACAACTCAAGAGGTGTTGAAATTT  600

seq1  TTTATTTCATTATCACGAGTTTCTGTTTAAAAGACCTCCTTGATAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCATTATCACGAGTTTCTGTTTAAAAGACCTCCTTGATAATAGA  650

seq1  AAAAGAACCATATGACAACTAGTAAACGTTTAAATCAGATAAGTCCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCATATGACAACTAGTAAACGTTTAAATCAGATAAGTCCTTAC  700

seq1  TACACCGATAGTGCTTGAGTTAGCAAAGTCCTGGAGGTGCTCAAGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCGATAGTGCTTGAGTTAGCAAAGTCCTGGAGGTGCTCAAGTTTTT  750

seq1  GGAGAAACAATATGCTCTTCTAGGTTCAAGTTATACATGGAGGTTGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAATATGCTCTTCTAGGTTCAAGTTATACATGGAGGTTGTCAT  800

seq1  AGTCACCCACAGAGACACAGCATGATGAAAGCAATACTCCTACAAGACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCACAGAGACACAGCATGATGAAAGCAATACTCCTACAAGACGC  850

seq1  AAGCATTAACCTTATTCAAAAGTGGCACATGTCTCAAGGGAGTACTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAACCTTATTCAAAAGTGGCACATGTCTCAAGGGAGTACTACAA  900

seq1  GCAACTAAGGAATCCTGAGCATAGGAGGAACGGTCTTCTCTAGGGAAGAG  950
      |||||||| | ||||||||||||||||||||||||||||||| |||||||
seq2  GCAACTAAAGGATCCTGAGCATAGGAGGAACGGTCTTCTCTA-GGAAGAG  949

seq1  CACTCCATTTGTTTAATCAATACGAAATGGTCAGGCCTGAAAACAAACAT  1000
      |||||||||||||| ||| |||||||||||||||||||||||||  ||||
seq2  CACTCCATTTGTTT-ATC-ATACGAAATGGTCAGGCCTGAAAAC--ACAT  995

seq1  ACAAGTAACATTATACGGACCGAACAATTGGTATTTAGGAATATGCATAT  1050
      || ||||||||||||||||||| |||  | ||||||||| ||||||||||
seq2  AC-AGTAACATTATACGGACCG-ACA--TTGTATTTAGG-ATATGCATAT  1040

seq1  GTGTGTATGAACCAAAAGTTAATAAAAAAAAAA  1083
      ||||||||||||| |||||| ||||||||||||
seq2  GTGTGTATGAACC-AAAGTT-ATAAAAAAAAAA  1071


seq1: chr14_85688762_85689897
seq2: B6Ng01-201M18.g_67_1181 (reverse)

seq1  GCCAGCCCCAATTACATGTCTTCCCATAAAGAGTTGCATTGGTCATGGGG  50
      ||||||||  | |||| |||||||   |||||| |||||  |||||  ||
seq2  GCCAGCCC--AATACA-GTCTTCCATAAAAGAG-TGCAT--GTCAT--GG  42

seq1  TCTTTCCACAGCATACCTAACAAAGTCAAGTACGCAAATTTATTTTTCAC  100
      ||||||||||||||| |||||||||   |||||||||  ||| |||||||
seq2  TCTTTCCACAGCATA-CTAACAAAGGTCAGTACGCAA--TTA-TTTTCAC  88

seq1  ATACATAAATAAATGCAGTCCAAAGGAAAATCAACTTTAGTGGGAAATCC  150
      ||||||||||||||||||| |||||  |||||||| ||||||||||||||
seq2  ATACATAAATAAATGCAGT-CAAAG--AAATCAAC-TTAGTGGGAAATCC  134

seq1  TTTAGTCCTAAGTCACATTGTCTATCCTCTTGGTAGTTAAAGGATAAAAA  200
      |||||| |||||||||| ||||||||||||  ||||||||||||||||||
seq2  TTTAGT-CTAAGTCACA-TGTCTATCCTCT--GTAGTTAAAGGATAAAAA  180

seq1  TGAAAAGAAATGGAACAGCAATCTCTAAGGGTGCTCTTTTATAAC-AAAA  249
      || ||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  TG-AAAGAAATGGAACAGCAATCTCTAAGGGTGCTC-TTTATAACAAAAA  228

seq1  AAGAATATCTGAATGCTCCCAAAGTTGATGGGATTTTTGACTTGTTGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATCTGAATGCTCCCAAAGTTGATGGGATTTTTGACTTGTTGAAT  278

seq1  ACAGCTCATTAATTGCCTACTGGAGATAAAGAATTCAGTCTTTGTAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCATTAATTGCCTACTGGAGATAAAGAATTCAGTCTTTGTAATAA  328

seq1  TTAGAATCATTGAAAATATAAAAAAATTAAACTGCACAGTCGTTTCAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCATTGAAAATATAAAAAAATTAAACTGCACAGTCGTTTCAGCA  378

seq1  TGTCTGCTAGAATTCATACTGATAAGCAACCACATTCTCTATACAAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTAGAATTCATACTGATAAGCAACCACATTCTCTATACAAATAA  428

seq1  ATCAGGCACATTATTAAGTATGGCAAGTTGGTTTCATCTCAGTAATAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCACATTATTAAGTATGGCAAGTTGGTTTCATCTCAGTAATAAAG  478

seq1  GAGATCCACACTGTCCTTCCATGGTTTACTGAAGTCAAGTAATTGGTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCACACTGTCCTTCCATGGTTTACTGAAGTCAAGTAATTGGTTAT  528

seq1  CCAAAAAAAAATCGAAGGAAAATACTGTGTTTTGATTTGGCAGCGGGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAATCGAAGGAAAATACTGTGTTTTGATTTGGCAGCGGGGAT  578

seq1  TGTGGATAAGGAAATGGTTTTAGGTTATAATAAACAATGGATGTAATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAAGGAAATGGTTTTAGGTTATAATAAACAATGGATGTAATTAT  628

seq1  TTCAAATTAATAAAGAATATAATTATTTTAAAACAAGATACAACAATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTAATAAAGAATATAATTATTTTAAAACAAGATACAACAATGAA  678

seq1  AGGCAAAAACCCTCATATGGAGGCCAGACAAGAAAGGTAACTCAACGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAACCCTCATATGGAGGCCAGACAAGAAAGGTAACTCAACGGGA  728

seq1  AGAAAAGATTCCCAAGAGCGGGTAAGAGTCAGAGATGCACCCACTCCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATTCCCAAGAGCGGGTAAGAGTCAGAGATGCACCCACTCCTGC  778

seq1  CTGAATGCTATTTTAAATACCACCTACATTCCTCAACATAATTTCTCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCTATTTTAAATACCACCTACATTCCTCAACATAATTTCTCCAA  828

seq1  AATACGTCCAATAGCTGCTCCCTACATAATATACAGAAAAGCGAGAAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTCCAATAGCTGCTCCCTACATAATATACAGAAAAGCGAGAAGTT  878

seq1  AAATTCTGATTTATAAAACTGAGCAAAATATAGTTTGAAACACTTATGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGATTTATAAAACTGAGCAAAATATAGTTTGAAACACTTATGAA  928

seq1  AATACCTTTCTTACATATTGCTTTCTAAATGAAAAATGCTATTTCAGATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTTCTTACATATTGCTTTCTAAATGAAAAATGCTATTTCAGATC  978

seq1  AAATAGTTGCTATCTCAAACTCTTGTATTCAGTGGTTCTTAGACATATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGCTATCTCAAACTCTTGTATTCAGTGGTTCTTAGACATATGC  1028

seq1  TCAGATGTAAAACAACTGAGATCTGCTTGAATTAGTCACTTCACTTTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTAAAACAACTGAGATCTGCTTGAATTAGTCACTTCACTTTTTA  1078

seq1  AGAAAACTATCATTTATTTTCATAGAAAGTGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTATCATTTATTTTCATAGAAAGTGGAATTC  1115


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