BAC Information

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BAC

Clone NameB6Ng01-202D01
Chromosome14 (Build37)
Map Location 78,555,488 - 78,666,633
singlet/doubletdoublet
Overlap genenone
Upstream geneD230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202D01.bB6Ng01-202D01.g
ACCGA022754GA022755
length1,0561,103
definitionB6Ng01-202D01.b B6Ng01-202D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,555,488 - 78,556,547)(78,665,532 - 78,666,633)
sequence
gaattccttctcctgctttccttgagatgggaggtgtgttaataaacctt
cttcactgtttatagaaagggcagctctctaagctggtacgttttcatta
ttgttagtgttataagaggcttgaggccagagagcatttgatatgattct
ctggtttctttgtatagagcatagtacactctattttagagtctgcttct
tttccattcccagattactcaaattcttggaaaagatgtagttctgatta
atcttagtgagctgatcactttgattatattgactatctatcaagtgcca
tttggtctgctatcaatcattagcagcctgcattctatttccagaactac
ttagctgaatgagactcagctcatttttataatagggcttgtcataagca
tgaaggtgaacatgcagctcctgactcataaaatgcataaatcctgtgtg
tgttcacaggaggaaaagactgtagccagttgataggatcaaggaaacag
catgggggccttgaagagggccttgaagaatagcttgggtcttttctccg
tattatttttattcattattattgtgtgtgtatgtatgtgggagagtaca
ggtacacatgtgtgggactctattctctcctttctttccactctggaatc
aggatcaccaaatcaggatgtcaagtttcagtagcaagtgcttttacaaa
ctgcaccattttgatggtcggcgtgggtttttatttttaaagacacataa
ataaggtcttattatggactgattattcatgcttgactttattttcatcc
atgaacttttctggagaaaacgttagccattttcatataattacatttta
atataatgatattggctgggatctgagacatgacgtaaggacttctagcc
agaaagatacaatcttccctatgatctaaatagccccaactattgctctc
attcgtacccactgtgtctccttttccagtatttttatttatcttattta
tttaatttggacttgtttgtcaccagcttacagcagctgtgtccctcatg
gtgttt
gaattcccatccgtctttttctgggctacataacatggagtgagtggaaa
gtggtaagtttacattgagaattctttcaggttcagggcaactacatggg
cccccacaggagtggggtgaagaccacatgggcagagactacgatgctgt
gagatcaggatcctagaccagttttcaatgatcatttttaacttggggta
aaagcttaactttcctctaacgccacttcattgttcataaaattgaaatc
ataacggccatctaatgtacctctctaataaccaagtaacttatcttctg
ggtttccgagagttcatgtaaacaacacatgtagatatcgagaatgaagt
gaacgagggactgagtcggtcagcgctcacagctttcctgagctttctcc
acgtctgctcattcttgaccctggtttggtgccacctcctcaccaatgag
cattcctaggggacacccaagggaccagtcagttcttgcccaggtttctg
gagtgaactttgtgttcagatcattacaacattaatggaaaaaaaatgga
gagcaggcaggagaagcaagttagggatttactggcagcataataatggc
agcaaatgacaatagagtgtgttcgtggaaaatacttggaaaagcgagat
gctatgtgttctcactacaaaaggataactgtacaaaataatgcacttaa
caacgcatgtgtatttcaaagcctcatgatgtataggacaaatgcatgta
attttgtttgtcaactttaaaactatgaaataaagaactattctgtttag
atttgacattttcaaatatttttctcttgttgagctctggtttcaccatc
ctgagtgtgagtttatttctttcaaattctccctttctaagtggaagaga
aaatagagggcagaaaagaggttcccctgaatctcagttgcaaaggatca
ttcgctcgctctgacagttgagcccacagtgctctcttagatccttgaat
caggtctggggccaagtctttttccctcctctctgagccaatctagatgt
agctgatgtgtatatctgtggtggggctgatcaagtgccattgggggggc
ctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78555488_78556547
seq2: B6Ng01-202D01.b_45_1100

seq1  GAATTCCTTCTCCTGCTTTCCTTGAGATGGGAGGTGTGTTAATAAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCCTGCTTTCCTTGAGATGGGAGGTGTGTTAATAAACCTT  50

seq1  CTTCACTGTTTATAGAAAGGGCAGCTCTCTAAGCTGGTACGTTTTCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGTTTATAGAAAGGGCAGCTCTCTAAGCTGGTACGTTTTCATTA  100

seq1  TTGTTAGTGTTATAAGAGGCTTGAGGCCAGAGAGCATTTGATATGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTGTTATAAGAGGCTTGAGGCCAGAGAGCATTTGATATGATTCT  150

seq1  CTGGTTTCTTTGTATAGAGCATAGTACACTCTATTTTAGAGTCTGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTTTGTATAGAGCATAGTACACTCTATTTTAGAGTCTGCTTCT  200

seq1  TTTCCATTCCCAGATTACTCAAATTCTTGGAAAAGATGTAGTTCTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTCCCAGATTACTCAAATTCTTGGAAAAGATGTAGTTCTGATTA  250

seq1  ATCTTAGTGAGCTGATCACTTTGATTATATTGACTATCTATCAAGTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTGAGCTGATCACTTTGATTATATTGACTATCTATCAAGTGCCA  300

seq1  TTTGGTCTGCTATCAATCATTAGCAGCCTGCATTCTATTTCCAGAACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTGCTATCAATCATTAGCAGCCTGCATTCTATTTCCAGAACTAC  350

seq1  TTAGCTGAATGAGACTCAGCTCATTTTTATAATAGGGCTTGTCATAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAATGAGACTCAGCTCATTTTTATAATAGGGCTTGTCATAAGCA  400

seq1  TGAAGGTGAACATGCAGCTCCTGACTCATAAAATGCATAAATCCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGAACATGCAGCTCCTGACTCATAAAATGCATAAATCCTGTGTG  450

seq1  TGTTCACAGGAGGAAAAGACTGTAGCCAGTTGATAGGATCAAGGAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAGGAGGAAAAGACTGTAGCCAGTTGATAGGATCAAGGAAACAG  500

seq1  CATGGGGGCCTTGAAGAGGGCCTTGAAGAATAGCTTGGGTCTTTTCTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGGCCTTGAAGAGGGCCTTGAAGAATAGCTTGGGTCTTTTCTCCG  550

seq1  TATTATTTTTATTCATTATTATTGTGTGTGTATGTATGTGGGAGAGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTATTCATTATTATTGTGTGTGTATGTATGTGGGAGAGTACA  600

seq1  GGTACACATGTGTGGGACTCTATTCTCTCCTTTCTTTCCACTCTGGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACATGTGTGGGACTCTATTCTCTCCTTTCTTTCCACTCTGGAATC  650

seq1  AGGATCACCAAATCAGGATGTCAAGTTTCAGTAGCAAGTGCTTTTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACCAAATCAGGATGTCAAGTTTCAGTAGCAAGTGCTTTTACAAA  700

seq1  CTGCACCATTTTGATGGTCGGCGTGGGTTTTTATTTTTAAAGACACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCATTTTGATGGTCGGCGTGGGTTTTTATTTTTAAAGACACATAA  750

seq1  ATAAGGTCTTATTATGGACTGATTATTCATGCTTGACTTTATTTTCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCTTATTATGGACTGATTATTCATGCTTGACTTTATTTTCATCC  800

seq1  ATGAACTTTTCTGGAGAAAACGTTAGCCATTTTCATATAATTACATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTTCTGGAGAAAACGTTAGCCATTTTCATATAATTACATTTTA  850

seq1  ATATAATGATATTGGCTGGGAACTGAGACATGACGTAAGGACTTCTAGCC  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATAATGATATTGGCTGGGATCTGAGACATGACGTAAGGACTTCTAGCC  900

seq1  AGAAAGAAACAATCTT-CCTATGATCTAAATAGCCCCAACTATTGCTCTC  949
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAAGATACAATCTTCCCTATGATCTAAATAGCCCCAACTATTGCTCTC  950

seq1  ATTCGTACCAGCTGTGTCTCCTTTTCCAGTATTTTTATTTTATTTTATTT  999
      |||||||||  |||||||||||||||||||||||||| ||||| ||| ||
seq2  ATTCGTACCCACTGTGTCTCCTTTTCCAGTATTTTTA-TTTATCTTA-TT  998

seq1  TATTTTATTTTGCTTTGTTTTGTCACCAGCTTACAAGGTAGCTGGTGT-C  1048
      ||||| |||| |  ||| |||||||||||||||||  | |||| |||| |
seq2  TATTTAATTTGGACTTG-TTTGTCACCAGCTTACA--GCAGCT-GTGTCC  1044

seq1  CTCATGGTGTTT  1060
      ||||||||||||
seq2  CTCATGGTGTTT  1056

seq1: chr14_78665532_78666633
seq2: B6Ng01-202D01.g_64_1166 (reverse)

seq1  GAGGCCCCCC--ATGGCACTTGGATCAGCCCCACCACAGATATACACATC  48
      ||||||||||  ||||||||| ||||||||||||||||||||||||||||
seq2  GAGGCCCCCCCAATGGCACTT-GATCAGCCCCACCACAGATATACACATC  49

seq1  AGCTACATCTAGATGGGCTCAGAGA-GAGGG-AAAAGACTTGGCCCCAGG  96
      |||||||||||||| |||||||||| ||||| |||||||||||||||| |
seq2  AGCTACATCTAGATTGGCTCAGAGAGGAGGGAAAAAGACTTGGCCCCA-G  98

seq1  CCCTGATTCAAGGATTCTTAGAGAGCACTGTGGGCTCCACTGTCAGAGCG  146
       ||||||||||||| ||| |||||||||||||||||| ||||||||||||
seq2  ACCTGATTCAAGGA-TCTAAGAGAGCACTGTGGGCTCAACTGTCAGAGCG  147

seq1  AGCGAATGATCCTTTGCAACTGAGATTCAGGGGAACCTCTTTTCTGCCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATGATCCTTTGCAACTGAGATTCAGGGGAACCTCTTTTCTGCCCT  197

seq1  CTATTTTCTCTTCCACTTTAGAAAGGGAGAATTTGAAAGAAATAAACTCA  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATTTTCTCTTCCAC-TTAGAAAGGGAGAATTTGAAAGAAATAAACTCA  246

seq1  CACTCAGGATGGTGAAACCAGAGCTCAACAAGAGAAAAATATTTG-AAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTCAGGATGGTGAAACCAGAGCTCAACAAGAGAAAAATATTTGAAAAT  296

seq1  GTCAAATCTAAACAGAATAGTTCTTTATTTCATAGTTTTAAAGTTGACAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCTAAACAGAATAGTTCTTTATTTCATAGTTTTAAAGTTGACAA  346

seq1  ACAAAATTACATGCATTTGTCCTATACATCATGAGGCTTTGAAATACACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTACATGCATTTGTCCTATACATCATGAGGCTTTGAAATACACA  396

seq1  TGCGTTGTTAAGTGCATTATTTTGTACAGTTATCCTTTTGTAGTGAGAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGTTAAGTGCATTATTTTGTACAGTTATCCTTTTGTAGTGAGAAC  446

seq1  ACATAGCATCTCGCTTTTCCAAGTATTTTCCACGAACACACTCTATTGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCATCTCGCTTTTCCAAGTATTTTCCACGAACACACTCTATTGTC  496

seq1  ATTTGCTGCCATTATTATGCTGCCAGTAAATCCCTAACTTGCTTCTCCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGCCATTATTATGCTGCCAGTAAATCCCTAACTTGCTTCTCCTG  546

seq1  CCTGCTCTCCATTTTTTTTCCATTAATGTTGTAATGATCTGAACACAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTCCATTTTTTTTCCATTAATGTTGTAATGATCTGAACACAAAG  596

seq1  TTCACTCCAGAAACCTGGGCAAGAACTGACTGGTCCCTTGGGTGTCCCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCCAGAAACCTGGGCAAGAACTGACTGGTCCCTTGGGTGTCCCCT  646

seq1  AGGAATGCTCATTGGTGAGGAGGTGGCACCAAACCAGGGTCAAGAATGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCTCATTGGTGAGGAGGTGGCACCAAACCAGGGTCAAGAATGAG  696

seq1  CAGACGTGGAGAAAGCTCAGGAAAGCTGTGAGCGCTGACCGACTCAGTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTGGAGAAAGCTCAGGAAAGCTGTGAGCGCTGACCGACTCAGTCC  746

seq1  CTCGTTCACTTCATTCTCGATATCTACATGTGTTGTTTACATGAACTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCACTTCATTCTCGATATCTACATGTGTTGTTTACATGAACTCTC  796

seq1  GGAAACCCAGAAGATAAGTTACTTGGTTATTAGAGAGGTACATTAGATGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCAGAAGATAAGTTACTTGGTTATTAGAGAGGTACATTAGATGG  846

seq1  CCGTTATGATTTCAATTTTATGAACAATGAAGTGGCGTTAGAGGAAAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATGATTTCAATTTTATGAACAATGAAGTGGCGTTAGAGGAAAGTT  896

seq1  AAGCTTTTACCCCAAGTTAAAAATGATCATTGAAAACTGGTCTAGGATCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTACCCCAAGTTAAAAATGATCATTGAAAACTGGTCTAGGATCC  946

seq1  TGATCTCACAGCATCGTAGTCTCTGCCCATGTGGTCTTCACCCCACTCCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCACAGCATCGTAGTCTCTGCCCATGTGGTCTTCACCCCACTCCT  996

seq1  GTGGGGGCCCATGTAGTTGCCCTGAACCTGAAAGAATTCTCAATGTAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGCCCATGTAGTTGCCCTGAACCTGAAAGAATTCTCAATGTAAAC  1046

seq1  TTACCACTTTCCACTCACTCCATGTTATGTAGCCCAGAAAAAGACGGATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTTCCACTCACTCCATGTTATGTAGCCCAGAAAAAGACGGATG  1096

seq1  GGAATTC  1102
      |||||||
seq2  GGAATTC  1103