BAC Information

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BAC

Clone NameB6Ng01-202F04
Chromosome14 (Build37)17 (Build37)
Map Location 90,260,804 - 90,261,89781,448,384 - 81,448,847
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202F04.bB6Ng01-202F04.g
ACCGA022845GA022846
length1,100162
definitionB6Ng01-202F04.b B6Ng01-202F04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,260,804 - 90,261,897)(81,448,384 - 81,448,847)
sequence
gaattcttctcctcaaaacgcataacatatcaattctgacagagtacata
gtattaaagctagattgcttagagtttatggttgtctgtcaaaaccagta
tgcgatgaaagagaaatatattagattgtgcaatatgcattatctatgta
tgggatggtgaaagaaagaaagtagcttaggtactacctgtgtgagcttt
aatctttcttagattatcagggctgtataatgaagtttaataggtgtagt
ttaaatatttgctgcaccactgaaattattttccatagtgtggacctaca
catgccagatcatggctgcatctcagtctttttttaatcattaaaaataa
agccatagagatgcgttaacctactacataaaagtgtgtttttaaatatt
tagttgtcactgtggttgctactcttggtgcaattattaacctaaatact
ttccagtcctacttagaaaccagaactatggagctcactgggtaatccct
gcctcatattgactcagaggttttttttttttgttgttgttgtttgtttg
ttttttgtttttttcattgcatacatcattttggcattttttgcccaatt
tttattaggtattttctccatttacatttcaaatgctatcccaaaagtcc
cctatatcctctccccaccctgctcccctccacacccacgcacacttctt
ggccctggtgttcccttgtactagggcatataaagttttgcaagatcaag
gggtctctcttccctactaggccatcttctgatacatatgcagctagaga
catgagctctcggggtactggttagtttcatattgttgtttccacctata
gggttgcagaccccttaagctccttgggtactttctctagctcctccatt
gtggtccctgtgtttcatccaatagctgactgtgagcatccacttctgtg
tttgccaggcacctggcacatcctcacaggagacagctgttatcaggtct
ttcagcaaaatctgctgggaatatgcaatagtgtctgtgtttggtggctg
attatgggatggattccctagtggatattagccaagaacttaggaatacc


tctacagataaatctctaatgtcccagaagcatgtaaagaaatgttcaac
atccttagttatcatggaaaagcaaaaacaaacaaaaacaaacaaacaaa
aaacaaaaacaaacaaacaaacaaaaaaccaaaaacccaacaagacaaaa
caaaacaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_90260804_90261897
seq2: B6Ng01-202F04.b_47_1144

seq1  GAATTCTTCTCCTCAAAACGCATAACATATCAATTCTGACAGAGTACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCCTCAAAACGCATAACATATCAATTCTGACAGAGTACATA  50

seq1  GTATTAAAGCTAGATTGCTTAGAGTTTATGGTTGTCTGTCAAAACCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAGCTAGATTGCTTAGAGTTTATGGTTGTCTGTCAAAACCAGTA  100

seq1  TGCGATGAAAGAGAAATATATTAGATTGTGCAATATGCATTATCTATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGAAAGAGAAATATATTAGATTGTGCAATATGCATTATCTATGTA  150

seq1  TGGGATGGTGAAAGAAAGAAAGTAGCTTAGGTACTACCTGTGTGAGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGTGAAAGAAAGAAAGTAGCTTAGGTACTACCTGTGTGAGCTTT  200

seq1  AATCTTTCTTAGATTATCAGGGCTGTATAATGAAGTTTAATAGGTGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTTAGATTATCAGGGCTGTATAATGAAGTTTAATAGGTGTAGT  250

seq1  TTAAATATTTGCTGCACCACTGAAATTATTTTCCATAGTGTGGACCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTGCTGCACCACTGAAATTATTTTCCATAGTGTGGACCTACA  300

seq1  CATGCCAGATCATGGCTGCATCTCAGTCTTTTTTTAATCATTAAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGATCATGGCTGCATCTCAGTCTTTTTTTAATCATTAAAAATAA  350

seq1  AGCCATAGAGATGCGTTAACCTACTACATAAAAGTGTGTTTTTAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGAGATGCGTTAACCTACTACATAAAAGTGTGTTTTTAAATATT  400

seq1  TAGTTGTCACTGTGGTTGCTACTCTTGGTGCAATTATTAACCTAAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCACTGTGGTTGCTACTCTTGGTGCAATTATTAACCTAAATACT  450

seq1  TTCCAGTCCTACTTAGAAACCAGAACTATGGAGCTCACTGGGTAATCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCCTACTTAGAAACCAGAACTATGGAGCTCACTGGGTAATCCCT  500

seq1  GCCTCATATTGACTCAGAGGTTTTTTTTTTTTGTTGTTGTTGTTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATATTGACTCAGAGGTTTTTTTTTTTTGTTGTTGTTGTTTGTTTG  550

seq1  TTTTTTGTTTTTTTCATTGCATACATCATTTTGGCATTTTTTGCCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTCATTGCATACATCATTTTGGCATTTTTTGCCCAATT  600

seq1  TTTATTAGGTATTTTCTCCATTTACATTTCAAATGCTATCCCAAAAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGGTATTTTCTCCATTTACATTTCAAATGCTATCCCAAAAGTCC  650

seq1  CCTATATCCTCTCCCCACCCTGCTCCCCTCCACACCCACGCACACTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATCCTCTCCCCACCCTGCTCCCCTCCACACCCACGCACACTTCTT  700

seq1  GGCCCTGGTGTTCCCTTGTACTAGGGCATATAAAG-TTTGCAAGATCAAG  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCCCTGGTGTTCCCTTGTACTAGGGCATATAAAGTTTTGCAAGATCAAG  750

seq1  GGGTCTCTCTTCCCTACTAGGCCATCTTCTGATACATATGCAGCTAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCTTCCCTACTAGGCCATCTTCTGATACATATGCAGCTAGAGA  800

seq1  CATGAGCTCTCGGGGTACTGGTTAG-TTCATATTGTTG-TTCCACCTATA  847
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CATGAGCTCTCGGGGTACTGGTTAGTTTCATATTGTTGTTTCCACCTATA  850

seq1  GGGTTGCAGACCCCTTAAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCAGACCCCTTAAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATT  900

seq1  GTGGTCCCTGTGTTTCATCCAATAGCTGACTGTGAGCATCCACTTCTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCTGTGTTTCATCCAATAGCTGACTGTGAGCATCCACTTCTGTG  950

seq1  TTTGCCAGGCA-CTGGCACAGCCTCACAAGAGACAGCTG-TATCAGGGTC  995
      ||||||||||| |||||||| ||||||| |||||||||| |||||||   
seq2  TTTGCCAGGCACCTGGCACATCCTCACAGGAGACAGCTGTTATCAGG--T  998

seq1  CTTTCAGCAAAATCTGCT-GGTATATGCAATAGTGTCTGTGTTTGGTGGC  1044
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  CTTTCAGCAAAATCTGCTGGGAATATGCAATAGTGTCTGTGTTTGGTGGC  1048

seq1  TGATTATGGGATGAATCCCTAAGTGGATATTAGCCCAGAAACTTA-GAAT  1093
      ||||||||||||| || ||  |||||||||||||| || |||||| ||||
seq2  TGATTATGGGATGGATTCCCTAGTGGATATTAGCCAAG-AACTTAGGAAT  1097

seq1  A  1094
      |
seq2  A  1098


seq1: chr17_81448384_81448847
seq2: B6Ng01-202F04.g_139_233

seq1  AAAAACAAAAACAAACAAAAAAAAAAAACCAAAAAAAAAAACCAAAAGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGAAAACAAGAGCTTAAGGCAAATGTGGAATTAACAGAAAGGAGTGCG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGTCACTGTCCTGTGTACGCAGGGTCAGACACACAAGACGTTTTTAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CGCCATGGCTAGTTACATGCTTTCAAGAACCTAAGAGTGACTACTTGCAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCAACCAGCTTTCTCCCAAAAACAAATAGAAAAAGCAACTGTTACCCACG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAATTCAGTAAATATGTTTTTAAAAAAGAATTTGAGCCGGGCAGTGGT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GGCACATGTCTTTAATCTCAGTACTTGGAAAGCAGAGACCAGCCTGGTCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAGTGAGTCCCAGGACAGCCAGGGCTACACAGAGAAACACTGCCTTG  400
                       | ||| |     | ||| | ||| ||       
seq2  ----------------AAAAGCAA-----AAACAAACAAAAAC-------  22

seq1  AAAAACAAA-ACAAAAC-AAAACAAACAAACAAACAAAAAAC----AACC  444
        ||||||| | ||||| ||||||||||||||||||||||||    ||||
seq2  --AAACAAACAAAAAACAAAAACAAACAAACAAACAAAAAACCAAAAACC  70

seq1  C-----CCCAAAACAAAACAAAAAA  464
      |       |||||||||||||||||
seq2  CAACAAGACAAAACAAAACAAAAAA  95


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