BAC Information

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BAC

Clone NameB6Ng01-203E05
Chromosome14 (Build37)
Map Location 111,835,145 - 111,836,376
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203E05.bB6Ng01-203E05.g
ACCGA023525GA023526
length1,1971,203
definitionB6Ng01-203E05.b B6Ng01-203E05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaatgcgccggacagtcctggtgcacacctttaatcccagcatt
tgggaggcagaagcagatggatttctgagttagaggccagcctggtctac
agagtgagttccaggacagccagggctacacagagaaaccctgtctggaa
aaaaacaaaacaaaacaaaaaaaacccaaaaaaccaaaaaacaaaaaagc
aaaacaaaacaaaacaaaacataaaaaggaattctaactcaaaaatactc
tcatactatggataggatttatgaggaaaacaatataaaataaatatggt
taacttgttgtcttatgtttttccatagttatttctgattcaaaatatga
gtgcttagaagagtcccaatcagagaggctgcctctggcagctaagggag
cagatgcagagacctacagccaaataggaggcagggaaagcatctaggct
ggaagtcaccattggctccccacatttggagctcagagaacctcaagaag
agcaagaggaaaaattagggaagccagaagggttgaggataccagaacac
gtcacacagaatcaactaagcaggtatcagagagttcaggaagagtcaag
tggcaagtgtggagtctacatgggcctgtgctagattctgttcctatatg
gtatagttattgggttgatgtttttggaagactcctgacagtgtgatttg
gggagtctctgaatctcttgcctgttactggtttcctttttctcctacta
ggttgtctctccccacctttatgtaaagatttgtacctaatcttactgca
tcttgttatgttggatttcgttgatgtctctagaagtcccgtctatttgg
gagagatacgacagaatagtagatctggcagagaagaagtgggaagaaga
gtacaaggaggataaactgcagttgagatgtattgtatgaaggagaacaa
attacaacttttaatttttctcacttcttcaaatgaaatattttatttac
ttcactcatcatatcttccaagctgagtaaatcatttttactctgtacta
atacattatctcagaaacttaaatcttttataattatattcataaactca
atactccttcttaaacatattccgcatctcatattggccgtaactgaaag
tatatttctgaatccattgcgatcatgatgcagtgtgcttgagtctc

gaattctctgtcaagaatatgaaaggttgttgttgttgtcgttgttgttg
ttttaatctgatatagaagatcaaagtaaagtactgacatttatgcatac
ttattaactttaaagaaatatataggctaaacagaaaatagacaaaattg
aaaagaaacatcagaatttcattttgtaatttttactttttaatttcatt
ttctcctttattaaaaatatattctttctcatacaatatatcctgattac
agtttcccttccatttcttctcccagattgttcctatctcttctccaagc
ctgacccctttctgtctcctattagaaaaatacctctccttgtatctcat
ctccaccccattctctgctccagcccctctcccagccatttccctccctt
cctctacttccaatgacttttatttccccttctgagtaagattagaatat
cttcccttggattctccttgctgttttgttttgtttagtttcttttcgta
ttttttttctttacactccagattttattcccctctctatctgccctctg
ttccatacaccataccttcctccaccctcctttctccacgaggctttccc
cacccacaaccccaacaccagcagacctctaaactccctggaacctccag
tttcttcagagttaggtgcagattctctgactgaacccagacctggcagt
cctctccaatatatgtgtagggtgcctcctatcagctggtgtatactgcc
tggttggtggtccagtgtttgagagatctcaggggtccaggttaattgag
actgctgatcctcttacaggttgcccttctcctcatattcttccagcttt
ttcctaattcaactacaggtgtcaactacaggttctgcccattggttggg
tgcaaatatctgcatctgactctttcagctacttgttggttctttcagag
ggcagtcatgataaggtccattttgtgagcgctccatacctcagtaatag
tgtctggcctgggacctccccttgagctggatccactttggggctagcat
gggtcttctttctcagcctcttctcaattccattctctgcagtcttcaga
acaggaccaatatggcagagttctgactggtggaatacaccatcctcatg
aatgcctggccttcccgtctggaaagtgggtcactcatacaagagtctct
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111835145_111836376
seq2: B6Ng01-203E05.b_44_1240

seq1  GAATTCTAATGCGCCGGACAGTCCTGGTGCACACCTTTAATCCCAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGCGCCGGACAGTCCTGGTGCACACCTTTAATCCCAGCATT  50

seq1  TGGGAGGCAGAAGCAGATGGATTTCTGAGTTAGAGGCCAGCCTGGTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAAGCAGATGGATTTCTGAGTTAGAGGCCAGCCTGGTCTAC  100

seq1  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTGGAA  150

seq1  AAAAACAAAACAAAACAAAAAAAACCCAAAAAACCAAAAAACAAAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAAACAAAAAAAACCCAAAAAACCAAAAAACAAAAAAGC  200

seq1  AAAACAAAACAAAACAAAACATAAAAAGGAATTCTAACTCAAAAATACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAACATAAAAAGGAATTCTAACTCAAAAATACTC  250

seq1  TCATACTATGGATAGGATTTATGAGGAAAACAATATAAAATAAATATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTATGGATAGGATTTATGAGGAAAACAATATAAAATAAATATGGT  300

seq1  TAACTTGTTGTCTTATGTTTTTCCATAGTTATTTCTGATTCAAAATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTGTCTTATGTTTTTCCATAGTTATTTCTGATTCAAAATATGA  350

seq1  GTGCTTAGAAGAGTCCCAATCAGAGAGGCTGCCTCTGGCAGCTAAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGAAGAGTCCCAATCAGAGAGGCTGCCTCTGGCAGCTAAGGGAG  400

seq1  CAGATGCAGAGACCTACAGCCAAATAGGAGGCAGGGAAAGCATCTAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAGAGACCTACAGCCAAATAGGAGGCAGGGAAAGCATCTAGGCT  450

seq1  GGAAGTCACCATTGGCTCCCCACATTTGGAGCTCAGAGAACCTCAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACCATTGGCTCCCCACATTTGGAGCTCAGAGAACCTCAAGAAG  500

seq1  AGCAAGAGGAAAAATTAGGGAAGCCAGAAGGGTTGAGGATACCAGAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGAAAAATTAGGGAAGCCAGAAGGGTTGAGGATACCAGAACAC  550

seq1  GTCACACAGAATCAACTAAGCAGGTATCAGAGAGTTCAGGAAGAGTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAGAATCAACTAAGCAGGTATCAGAGAGTTCAGGAAGAGTCAAG  600

seq1  TGGCAAGTGTGGAGTCTACATGGGCCTGTGCTAGATTCTGTTCCTATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGTGGAGTCTACATGGGCCTGTGCTAGATTCTGTTCCTATATG  650

seq1  GTATAGTTATTGGGTTGATGTTTTTGGAAGACTCCTGACAGTGTGATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTATTGGGTTGATGTTTTTGGAAGACTCCTGACAGTGTGATTTG  700

seq1  GGGAGTCTCTGAATCTCTTGCCTGTTACTGGTTTCCTTTTTCTCCTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTCTGAATCTCTTGCCTGTTACTGGTTTCCTTTTTCTCCTACTA  750

seq1  GGTTGTCTCTCCCCACCTTTATGTAAAGATTTGTACCTAATCTTACTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTCTCCCCACCTTTATGTAAAGATTTGTACCTAATCTTACTGCA  800

seq1  TCTTGTTATGTTGGATTTCGTTGATGTCTCTAGAAGTCCCGTCTATTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTATGTTGGATTTCGTTGATGTCTCTAGAAGTCCCGTCTATTTGG  850

seq1  GAGAGATACGACAGAATAGTAGATCTGGCAGGAGAAGAAGTGGGAAGAAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGAGATACGACAGAATAGTAGATCTGGCA-GAGAAGAAGTGGGAAGAAG  899

seq1  AGTACAAGGAGGATAAACTGCAGTTGAGATGTATTGTATGAAGGAAGAAC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTACAAGGAGGATAAACTGCAGTTGAGATGTATTGTATGAAGG-AGAAC  948

seq1  AAATTACAACTTTTAATTTTTCTTCACTTCTTCAAAATGAAATATTTATT  1000
      |||||||||||||||||||||| |||||||||| |||||||||||||  |
seq2  AAATTACAACTTTTAATTTTTC-TCACTTCTTC-AAATGAAATATTTTAT  996

seq1  TTACTTTCACCTCATCCAATTATCTTCCAAGCTGAGTAAATCATTTTTAA  1050
      |||| |||| ||||||    ||||||||||||||||||||||||||||| 
seq2  TTAC-TTCA-CTCATC---ATATCTTCCAAGCTGAGTAAATCATTTTTA-  1040

seq1  ACTTCTGTACTAATTACAATTTATTCTCAGAAACTTAAAAATCTTTTTAT  1100
         |||||||||| ||||  ||| ||||||||||||  ||||| ||||||
seq2  --CTCTGTACTAA-TACA--TTA-TCTCAGAAACTT--AAATC-TTTTAT  1081

seq1  AATTTATTATCATAAACTCCATATTACTTCCTTCTTAAAACATTATTCGC  1150
      || ||||  |||||||||| |||     |||||||| ||||||  | |||
seq2  AA-TTATATTCATAAACTCAATA----CTCCTTCTT-AAACATATTCCGC  1125

seq1  ATCTCATATATGCCATAAGTGAAAAGTAATTATTTTCTGAATCCCATTTT  1200
      |||||||||  ||| ||| || ||||||  || |||||||||||    ||
seq2  ATCTCATATTGGCCGTAACTG-AAAGTA--TA-TTTCTGAATCC---ATT  1168

seq1  GCAGTTACATGGATGCAGTGTGTATGAGTCTC  1232
      ||  |  ||| |||||||||||  ||||||||
seq2  GCGAT--CAT-GATGCAGTGTGCTTGAGTCTC  1197


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