BAC Information

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BAC

Clone NameB6Ng01-204C14
Chromosome14 (Build37)
Map Location 88,716,788 - 88,717,927
singlet/doubletsinglet
Overlap genenone
Upstream geneTdrd3, LOC100043317, LOC100043780
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204C14.bB6Ng01-204C14.g
ACCGA024186GA024187
length1,1361,109
definitionB6Ng01-204C14.b B6Ng01-204C14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccactggcacagataatactttagcttaacaaaattataaatgca
taaaaatggttgaaagggatgaagaatttcttgccagaacaagaacttga
aacatgcaactgctttgacatcatctcttttttttatactctgcaaagaa
tgttagcttaatccatatactttccatgaaattatttactgtaatgatac
aaaggagtgtggaagcataagataagaaatatttctgaaagtctaaatac
acattatttcctatgcacctccctcacctcctcactatgtatatgaacga
gagattctcacttgtttcattttgaaatttcctacattttatatcaatct
caattggctccagagttctctagatatgtttcattttatttcttggggaa
agcttcacaacaacttaactctcactctttgatatagctgcatcctttct
acttgagcctccaccacagtgaattcttctccttggcttagtaagaccct
gaaaagtccatttcatttaaatcccttttgtcagatggagtgtttgagtg
ttccttactaaggatataacaactattttaaagaggaatagcatttctgt
actcatgccccattcatttaaagaagattaaatgctgtgaaaaggctacc
actattacggctgtttcagtgcaatatgtctcggtcagaattgcataaca
tctctattggagctcatgatactctccaggttagacatttatgctttagt
cactgcttccgaagttcaaggggcatacttcaagtgaaacaacagtatct
ttcaatatttgaaggtacacgtgcctaaattcctcataatccattgtcca
ttaaaccatgttcttgttcatgtaaacactcaattttaattcttaatttc
ttagagatcattataatcttaatatgttgtaccaatatgctaaacttgga
actacaaaaaagatggtcaatagtagcataaaaaaattcttacagtttat
tgtttacttgtatgactgtcatgaaatatcatacatagcacatataaata
tttatatagagtaaatatatattttcatattcagtaagtattttatgtac
ttcataataggttatacactcttgtatttcttaaaa
gaattctttgtttagctctgtacaccatttttaataaggttatttgtttc
tctggagcctaactttttgagttctttgtagatattggatattagccccc
tatacaatttaggattggtaaaaatcttttcccagtctgttggttgcctt
tttgtcttattgaaagtgtcctttgccttacagaagctttgcaattttat
gaggtcccatttgttgattcttgatcttacatcacacgccattgctgttc
tgttcaagaatttttctcctgtgcccatatcttctaggctcttccccact
ttctcctccataaagtttcagtctctctggttttctgtggagttcattga
tccacttgaagttgagctttgtacaatgagataagaaagactcaatttgc
attcttcaacattctaactgccagttgagccaacaccatttgttgaaagt
actgtcttttttttccactgaatggttttagctcctttgtcaaagatcaa
gtgaccatatgtttgagttcatttctgggtcttcagttctatcccattga
aatacctgtctgtcactgtatcagtaccatgcacttttgatcataattgc
tctgtagtatagcttgaggtcagggatggtgattccacctgaggtttttt
tattgttgagaaaagtttttgctctcctagggtttttgttattccagatg
aatttgcaaattgccctttctaattcgttgaagaattgagttggaatttt
gatggggatttcattgaatctgtagatttctttcagcaagagggccattt
ttactatattaatcctgccaatttcatgagcataagaaatctttccatct
tctgagatcttcttcgatttctttcttcagagacttgaagttctttctat
ctatctatctatctatctatctatctatctatctatctatctatctatct
atttattttatagattatttttcttcatttatatttcaaatgctattcct
gaagtcccttattcttccctgcctgctcccaacacacactcagctcttgg
ttggcattcccctgtactggggcaatataatcctttgccatgatcaaggg
actctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88716788_88717927
seq2: B6Ng01-204C14.b_46_1181 (reverse)

seq1  TTTTAAGAAATACAGAGTTTGTATAA-CTATTATGAAGGTACAT-AAATA  48
      |||||||||||||| ||  ||||||| |||||||||| |||||| |||||
seq2  TTTTAAGAAATACA-AGAGTGTATAACCTATTATGAA-GTACATAAAATA  48

seq1  CTTACTGATTAATGAAAATATATAATTTACTTCTATAT-AATATTTATAT  97
      |||||||| | |||||||||||| |||||| ||||||| |||||||||||
seq2  CTTACTGAAT-ATGAAAATATAT-ATTTAC-TCTATATAAATATTTATAT  95

seq1  GTGCTATGTTATGATATTTCATTGACAGTCATTACAAGTAAAC-ATAAAC  146
      |||||||| |||||||||||| ||||||||| ||||||||||| ||||||
seq2  GTGCTATG-TATGATATTTCA-TGACAGTCA-TACAAGTAAACAATAAAC  142

seq1  TTGTAAGA--TTTTTTATGCTACTATTGACCATCCTTTTTTGTAGTTCCA  194
       |||||||  ||||||||||||||||||||||| ||||||||||||||||
seq2  -TGTAAGAATTTTTTTATGCTACTATTGACCAT-CTTTTTTGTAGTTCCA  190

seq1  AGTTTAGCATATTGGTACAACATATTAAGATTATAATGATCTCTAAGAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGCATATTGGTACAACATATTAAGATTATAATGATCTCTAAGAAA  240

seq1  TTAAGAATTAAAATTGAGTGTTTACATGAACAAGAACATGGTTTAATGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTAAAATTGAGTGTTTACATGAACAAGAACATGGTTTAATGGA  290

seq1  CAATGGATTATGAGGAATTTAGGCACGTGTACCTTCAAATATTGAAAGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATTATGAGGAATTTAGGCACGTGTACCTTCAAATATTGAAAGAT  340

seq1  ACTGTTGTTTCACTTGAAGTATGCCCCTTGAACTTCGGAAGCAGTGACTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTTTCACTTGAAGTATGCCCCTTGAACTTCGGAAGCAGTGACTA  390

seq1  AAGCATAAATGTCTAACCTGGAGAGTATCATGAGCTCCAATAGAGATGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAATGTCTAACCTGGAGAGTATCATGAGCTCCAATAGAGATGTT  440

seq1  ATGCAATTCTGACCGAGACATATTGCACTGAAACAGCCGTAATAGTGGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCTGACCGAGACATATTGCACTGAAACAGCCGTAATAGTGGTA  490

seq1  GCCTTTTCACAGCATTTAATCTTCTTTAAATGAATGGGGCATGAGTACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCACAGCATTTAATCTTCTTTAAATGAATGGGGCATGAGTACAG  540

seq1  AAATGCTATTCCTCTTTAAAATAGTTGTTATATCCTTAGTAAGGAACACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTATTCCTCTTTAAAATAGTTGTTATATCCTTAGTAAGGAACACT  590

seq1  CAAACACTCCATCTGACAAAAGGGATTTAAATGAAATGGACTTTTCAGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTCCATCTGACAAAAGGGATTTAAATGAAATGGACTTTTCAGGG  640

seq1  TCTTACTAAGCCAAGGAGAAGAATTCACTGTGGTGGAGGCTCAAGTAGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTAAGCCAAGGAGAAGAATTCACTGTGGTGGAGGCTCAAGTAGAA  690

seq1  AGGATGCAGCTATATCAAAGAGTGAGAGTTAAGTTGTTGTGAAGCTTTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGCTATATCAAAGAGTGAGAGTTAAGTTGTTGTGAAGCTTTCC  740

seq1  CCAAGAAATAAAATGAAACATATCTAGAGAACTCTGGAGCCAATTGAGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAATAAAATGAAACATATCTAGAGAACTCTGGAGCCAATTGAGAT  790

seq1  TGATATAAAATGTAGGAAATTTCAAAATGAAACAAGTGAGAATCTCTCGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAATGTAGGAAATTTCAAAATGAAACAAGTGAGAATCTCTCGT  840

seq1  TCATATACATAGTGAGGAGGTGAGGGAGGTGCATAGGAAATAATGTGTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACATAGTGAGGAGGTGAGGGAGGTGCATAGGAAATAATGTGTAT  890

seq1  TTAGACTTTCAGAAATATTTCTTATCTTATGCTTCCACACTCCTTTGTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTTCAGAAATATTTCTTATCTTATGCTTCCACACTCCTTTGTAT  940

seq1  CATTACAGTAAATAATTTCATGGAAAGTATATGGATTAAGCTAACATTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGTAAATAATTTCATGGAAAGTATATGGATTAAGCTAACATTCT  990

seq1  TTGCAGAGTATAAAAAAAAGAGATGATGTCAAAGCAGTTGCATGTTTCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGTATAAAAAAAAGAGATGATGTCAAAGCAGTTGCATGTTTCAA  1040

seq1  GTTCTTGTTCTGGCAAGAAATTCTTCATCCCTTTCAACCATTTTTATGCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTTCTGGCAAGAAATTCTTCATCCCTTTCAACCATTTTTATGCA  1090

seq1  TTTATAATTTTGTTAAGCTAAAGTATTATCTGTGCCAGTGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTTTGTTAAGCTAAAGTATTATCTGTGCCAGTGGAATTC  1136