BAC Information

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BAC

Clone NameB6Ng01-205E11
Chromosome14 (Build37)
Map Location 81,116,041 - 81,190,901
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205E11.bB6Ng01-205E11.g
ACCGA025004GA025005
length1,1911,116
definitionB6Ng01-205E11.b B6Ng01-205E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,189,696 - 81,190,901)(81,116,041 - 81,117,146)
sequence
gaattcatgatagtatgctatttgcttcctgagtcctgtctcagcatgcc
tggttagcttcttcatccttaataagagaagaactgtttaatggagaaaa
aataccacctgtgcagtttagtgaaaagatccagccaagaacatactatg
tacaaactccaataaaaagaatggttttgggaagagaaattctttacata
tggaacacaggacagaactacattttttttttaaaaaaatctatgataga
attgttctaatggtcttgtaggcttattttctatctgcattaaattgatt
aaaggctccatctcccaggctatcaccaaattcatttctcaactaataaa
atattaagatgatgcatacttaagactggcacagaagaattcattgataa
ggttcagctcagaatgaaatgttctaccaggactatttgggactaatgag
agtaaagacctgctatagagaaagaaacagactcctatactttccagggt
aaactggattaagtggtattgtgacacacagcaacattgcctcacagaat
agccaaactttggtgtgcttgctctatttgtttcagttttcgttgtctct
ataatacatgacttgtataaaatatatctttatatatcaaggaatgtgtg
gtctctaggtttcagactcttgtccacttgactacgacaacataacagct
gcatttgatctttaagaaagttattttatttccttgtcctctgccactct
gctctcttgtgtttactgtcctctcctgtatgtgtcaagtagataattat
aggtgtcaatgtttgggaagcattttttgtatggtgactctttttgacta
aacttatgtaaaggttgaaagctctctggtcagtgatgtgattcatttgt
ttgtttgttttgtttgactatttgcatctttatattaactttatttttcc
actaaatatttttattcttctctcatataatatgctctgactacagcctt
cccttcctttcttctcctaaccccctacttctattttctttcctgcttct
ccaattcacttcagaaaagtaggtctctccagtggatgtgattcgaagaa
aaattaaacttttgttcatattaaaaaccattattagatggatgcttcag
ttaacatgatgctataattctctcagattaggacaaattat

gaattcagaaatttgcctgcctctgactcccaagtgctgggattaaaggt
gtgtgccaccaccgcctgactcttacttttttttattagatttcctcttc
atttacatctcaaatgctaccccctttcccagtttcctttacttttaatc
attgtgagaatccatttggggctggagagatggcttagctgtcaagagca
ctgtctgctcatctagagatcctgagttcaatccccaggaaccacatggc
agctcagatccacctatagcatgatctgatgccctcttctaccatgcagg
tgtacatgcagatagggcactcatatacataaaataaataaatgagtaaa
tcttgggggaaaaaatccttaaaaaagagaatccatttcatattgctaca
aaatatgaaaatagttgcataatcatattacatttagtaatagtacactt
ataattgtatacttaagcaataatattctctctctcaccctgtgtgtgtg
taggtgtgtgtctcagtggtggagtgatcataaaatatgtgtgtatattt
tacaccaaaattaattttatgaaactcagtctttatacaaaacactttga
gagacactaattgttccttttttgttgttatttggttgacagcaattgaa
tttaaggtcaataaaattgcaatatagtaaaatagatatgaaatgtgctt
tcaaaattttgaaaatgaattatatatgggttaagaaaggagcttataaa
attacatgtaggttatactaagactgtctacttccaatttcttcactaca
aaaaacaactggagaatgcagaataaaataaaagctgtatcgctagaatt
aataaagagaaatacttttttcataaaagatgctgtaattaaccttatga
gactcgttgtgattataaatcatggcaggaaattactggagaatgacctc
ataataaaggcaacaccactagtatgtggagcagttcctgaattaaaggg
aaagatgatctataattaagcctgaccagttgagggtcaggaattaaggc
ctcttgccttcttttttttttttttctgattatttatattatcagggagg
ccacccaacctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_81189696_81190901
seq2: B6Ng01-205E11.b_45_1235 (reverse)

seq1  ATAATTTGTCCTAAATCTTTGAAGATTATTAGCCATTCCTTGTTTACTGA  50
      |||||||||||| |||||  ||  |||| ||| |||  | |||| |||||
seq2  ATAATTTGTCCT-AATCTGAGAGAATTA-TAG-CAT--CATGTTAACTGA  45

seq1  TGCATCAATCTAGATAATGGGTTTTTTTTAATATGAACAAAAGTTTTAAT  100
       ||||| ||||| |||||||    ||||||||||||||||||||||  | 
seq2  AGCATCCATCTA-ATAATGG----TTTTTAATATGAACAAAAGTTT--AA  88

seq1  TTTTTCTTCGAAATCACAT-CACTGG-GAGACCTACTTTTTCTGAAGTGA  148
      |||||||||| |||||||| |||||| ||||||||| |||||||||||||
seq2  TTTTTCTTCG-AATCACATCCACTGGAGAGACCTAC-TTTTCTGAAGTGA  136

seq1  AATGGAGAAGCAGGGAAAGGAGATAGAAGTAGGGGGTTAGGAGGAAGAAA  198
      | |||||||||| |||||| | |||||||||||||||||||| |||||||
seq2  ATTGGAGAAGCA-GGAAAGAAAATAGAAGTAGGGGGTTAGGA-GAAGAAA  184

seq1  GGAAGGGAAGGCTGTAGTCAGAGCATATTATATGAGAGAAGAATAAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAAGGCTGTAGTCAGAGCATATTATATGAGAGAAGAATAAAAAT  234

seq1  ATTTAGTGGAAAAATTAAAGTTAATATAAAGATGCAAATAGTCAAACAAA  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGGAAAAA-TAAAGTTAATATAAAGATGCAAATAGTCAAACAAA  283

seq1  ACAAACAAACAAATGAATCACATCACTGACCAGAGAGCTTTCAACCTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAATGAATCACATCACTGACCAGAGAGCTTTCAACCTTTA  333

seq1  CATAAGTTTAGTCAAAAAGAGTCACCATACAAAAAATGCTTCCCAAACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTTAGTCAAAAAGAGTCACCATACAAAAAATGCTTCCCAAACAT  383

seq1  TGACACCTATAATTATCTACTTGACACATACAGGAGAGGACAGTAAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTATAATTATCTACTTGACACATACAGGAGAGGACAGTAAACAC  433

seq1  AAGAGAGCAGAGTGGCAGAGGACAAGGAAATAAAATAACTTTCTTAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAGAGTGGCAGAGGACAAGGAAATAAAATAACTTTCTTAAAGA  483

seq1  TCAAATGCAGCTGTTATGTTGTCGTAGTCAAGTGGACAAGAGTCTGAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCAGCTGTTATGTTGTCGTAGTCAAGTGGACAAGAGTCTGAAAC  533

seq1  CTAGAGACCACACATTCCTTGATATATAAAGATATATTTTATACAAGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACCACACATTCCTTGATATATAAAGATATATTTTATACAAGTCA  583

seq1  TGTATTATAGAGACAACGAAAACTGAAACAAATAGAGCAAGCACACCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATAGAGACAACGAAAACTGAAACAAATAGAGCAAGCACACCAAA  633

seq1  GTTTGGCTATTCTGTGAGGCAATGTTGCTGTGTGTCACAATACCACTTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTATTCTGTGAGGCAATGTTGCTGTGTGTCACAATACCACTTAA  683

seq1  TCCAGTTTACCCTGGAAAGTATAGGAGTCTGTTTCTTTCTCTATAGCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTACCCTGGAAAGTATAGGAGTCTGTTTCTTTCTCTATAGCAGG  733

seq1  TCTTTACTCTCATTAGTCCCAAATAGTCCTGGTAGAACATTTCATTCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTCTCATTAGTCCCAAATAGTCCTGGTAGAACATTTCATTCTGA  783

seq1  GCTGAACCTTATCAATGAATTCTTCTGTGCCAGTCTTAAGTATGCATCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACCTTATCAATGAATTCTTCTGTGCCAGTCTTAAGTATGCATCAT  833

seq1  CTTAATATTTTATTAGTTGAGAAATGAATTTGGTGATAGCCTGGGAGATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTTTATTAGTTGAGAAATGAATTTGGTGATAGCCTGGGAGATG  883

seq1  GAGCCTTTAATCAATTTAATGCAGATAGAAAATAAGCCTACAAGACCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTAATCAATTTAATGCAGATAGAAAATAAGCCTACAAGACCATT  933

seq1  AGAACAATTCTATCATAGATTTTTTTAAAAAAAAAATGTAGTTCTGTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATTCTATCATAGATTTTTTTAAAAAAAAAATGTAGTTCTGTCCT  983

seq1  GTGTTCCATATGTAAAGAATTTCTCTTCCCAAAACCATTCTTTTTATTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCATATGTAAAGAATTTCTCTTCCCAAAACCATTCTTTTTATTGG  1033

seq1  AGTTTGTACATAGTATGTTCTTGGCTGGATCTTTTCACTAAACTGCACAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTACATAGTATGTTCTTGGCTGGATCTTTTCACTAAACTGCACAG  1083

seq1  GTGGTATTTTTTCTCCATTAAACAGTTCTTCTCTTATTAAGGATGAAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTTTTTCTCCATTAAACAGTTCTTCTCTTATTAAGGATGAAGAA  1133

seq1  GCTAACCAGGCATGCTGAGACAGGACTCAGGAAGCAAATAGCATACTATC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCAGGCATGCTGAGACAGGACTCAGGAAGCAAATAGCATACTATC  1183

seq1  ATGAATTC  1206
      ||||||||
seq2  ATGAATTC  1191


seq1: chr14_81116041_81117146
seq2: B6Ng01-205E11.g_69_1184

seq1  GAATTCAGAAATTTGCCTGCCTCTGACTCCCAAGTGCTGGGATTAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATTTGCCTGCCTCTGACTCCCAAGTGCTGGGATTAAAGGT  50

seq1  GTGTGCCACCACCGCCTGACTCTTACTTTTTTTTATTAGATTTCCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACCACCGCCTGACTCTTACTTTTTTTTATTAGATTTCCTCTTC  100

seq1  ATTTACATCTCAAATGCTACCCCCTTTCCCAGTTTCCTTTACTTTTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATCTCAAATGCTACCCCCTTTCCCAGTTTCCTTTACTTTTAATC  150

seq1  ATTGTGAGAATCCATTTGGGGCTGGAGAGATGGCTTAGCTGTCAAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGAATCCATTTGGGGCTGGAGAGATGGCTTAGCTGTCAAGAGCA  200

seq1  CTGTCTGCTCATCTAGAGATCCTGAGTTCAATCCCCAGGAACCACATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTCATCTAGAGATCCTGAGTTCAATCCCCAGGAACCACATGGC  250

seq1  AGCTCAGATCCACCTATAGCATGATCTGATGCCCTCTTCTACCATGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGATCCACCTATAGCATGATCTGATGCCCTCTTCTACCATGCAGG  300

seq1  TGTACATGCAGATAGGGCACTCATATACATAAAATAAATAAATGAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGCAGATAGGGCACTCATATACATAAAATAAATAAATGAGTAAA  350

seq1  TCTTGGGGGAAAAAATCCTTAAAAAAGAGAATCCATTTCATATTGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGGAAAAAATCCTTAAAAAAGAGAATCCATTTCATATTGCTACA  400

seq1  AAATATGAAAATAGTTGCATAATCATATTACATTTAGTAATAGTACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAAATAGTTGCATAATCATATTACATTTAGTAATAGTACACTT  450

seq1  ATAATTGTATACTTAAGCAATAATATTCTCTCTCTCACCCTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTATACTTAAGCAATAATATTCTCTCTCTCACCCTGTGTGTGTG  500

seq1  TAGGTGTGTGTCTCAGTGGTGGAGTGATCATAAAATATGTGTGTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTGTCTCAGTGGTGGAGTGATCATAAAATATGTGTGTATATTT  550

seq1  TACACCAAAATTAATTTTATGAAACTCAGTCTTTATACAAAACACTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAAAATTAATTTTATGAAACTCAGTCTTTATACAAAACACTTTGA  600

seq1  GAGACACTAATTGTTCCTTTTTTGTTGTTATTTGGTTGACAGCAATTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTAATTGTTCCTTTTTTGTTGTTATTTGGTTGACAGCAATTGAA  650

seq1  TTTAAGGTCAATAAAATTGCAATATAGTAAAATAGATATGAAATGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCAATAAAATTGCAATATAGTAAAATAGATATGAAATGTGCTT  700

seq1  TCAAAATTTTGAAAATGAATTATATATGGGTTAAGAAAGGAGCTTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTTGAAAATGAATTATATATGGGTTAAGAAAGGAGCTTATAAA  750

seq1  ATTACATGTAGGTTATACTAAGACTGTCTACTTCCAATTTCTTCACTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTAGGTTATACTAAGACTGTCTACTTCCAATTTCTTCACTACA  800

seq1  AAAAACAACTGGAGAATGCAGAATAAAATAAAAGCTGTATCGCTAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACTGGAGAATGCAGAATAAAATAAAAGCTGTATCGCTAGAATT  850

seq1  AATAAAGAGAAATACTTTTTTCATAAAAGATGCTGTAATTAACC-TATGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATAAAGAGAAATACTTTTTTCATAAAAGATGCTGTAATTAACCTTATGA  900

seq1  GACTCGTTGTGATTATAAATCATGGCAGGAAATTACT-GAGAATGA-CTC  947
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GACTCGTTGTGATTATAAATCATGGCAGGAAATTACTGGAGAATGACCTC  950

seq1  AAAAT-AAGGC-ACA-CACTAGTATGT-GAGCAGTTCCTGAATTAAA-GG  992
      | ||| ||||| ||| ||||||||||| ||||||||||||||||||| ||
seq2  ATAATAAAGGCAACACCACTAGTATGTGGAGCAGTTCCTGAATTAAAGGG  1000

seq1  AAAGATGATCTATAA-TAAG-CTGACCAGTGGA-GGTCAGGAA-TAAGGC  1038
      ||||||||||||||| |||| ||||||||| || ||||||||| ||||||
seq2  AAAGATGATCTATAATTAAGCCTGACCAGTTGAGGGTCAGGAATTAAGGC  1050

seq1  TTCCTGCTTTCCTTTTTTTTTTTTTCTGTATATTTTAATATTATACAATG  1088
       || ||| ||| ||||||||||||||||  |||||  ||||||| ||  |
seq2  CTCTTGCCTTCTTTTTTTTTTTTTTCTGATTATTT--ATATTAT-CAGGG  1097

seq1  AGG-CACCCAACCTTTTTT  1106
      ||| |||||||||||||||
seq2  AGGCCACCCAACCTTTTTT  1116


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