BAC Information

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BAC

Clone NameB6Ng01-208B12
Chromosome14 (Build37)
Map Location 55,777,555 - 55,898,564
singlet/doubletdoublet
Overlap geneLOC667938, Dhrs2, LOC100042720
Upstream geneDad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4
Downstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208B12.bB6Ng01-208B12.g
ACCGA027067GA027068
length9051,136
definitionB6Ng01-208B12.b B6Ng01-208B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,897,656 - 55,898,564)(55,777,555 - 55,778,698)
sequence
gaattctttcccaagtctgcctatgccctatttgaagtgaacaagcattt
ctttgtgtctcctcaggaagtcacacaatatgttttcggttccttcattt
tgatagggtatttatgaatagaccatttatttatacattctgctgctaat
ggacgttgggcagtttccgtatgagtcagttccatgcagagcaatacagg
tgcatataattctgttgcctaggaaccagatgagaaattgctgttctcct
ctaaggtgtggtcaagccagtgcacaaaaccatcacagtggtgtcaggtt
acgctccagtggaggctcccattactctgagtcttcaccaacacacactc
tcagctgtaccttacctgggttttgtttgttttcttttgtttgtttgttt
gtttgtttgttttctttgaaatttcccagattgactgagcacatttttat
acatgtatgggtgtttggaaacttgtaaagtgtctgtcagcttgtcgttt
cctttggttgttttttctttttttttttttttttttttttccatttttta
ttaggtatttcactcatttacatttgcaatgctataccaaaagtccccaa
tgaaggagctagagaaagtaccaaagaagctaaagggatctgcaacccta
taggtggaacaacattatgaactaaccagtaccccggagctcttgactct
agctgcatatgcatcaaaaagatggcctagtcggccatcactggttgttt
tttcattgtttctcccacttcaggcttttcctatgtcctcaggcaggtag
gcccgtgtccccaaagactccgttgctggaaggtggttccccaggcacga
agtgcgacaggtgaagttggggaaatgactaggtcccaaaggtatggctt
ctgat
gaattcactttgtagaccaggctgggctcaaactcatggagatctacctg
cctctgccctgagaatgctgagatcaaaggcgtgcaccatcatgcccagc
actaccatttggaaaattaaaaataagggttttttcctacttaaaattag
aatttaaatttttttaaaaaagatttatttattttatgtatgtgagtaca
ctgtagctgtcttcagacacaccagaagaggacattggatctcattacag
atggttgtgagccaccatgtggttgctgggaattgaactcaggacctctg
gaagagcagccagtggtcataaccactgaaccatgtctctagccctaagt
tttaaaattttttaaatattaaaatgtaattacatcatttcctcctctcc
cttcttccttccaacccctcctgtggagcatcttgctccttctctctgga
atttttagccttaaaaaataaatatcaattaaatatcatatatatgccta
catacataacgcaacctttacagtcagcttactgtgacacaccacacaca
cacacacacacacacacatacacacacgcctgtgtgtgtgcctgtgtccc
gtcccttttctctaggctggaaggagtcttggatgagacctttttccaat
taactaaaccacctacttttctttatcttctgggcgtttactgtgaaaag
actttataaacaattttgaatttttagctaatatgtataaaacatccatt
ataatcacatttatctttctttaataaaagtgggtcatgtaatttttaaa
attagtttaaaaaagtatttatttgtatatgagtgaactatcttcacaca
cacccagaaaaggaaatcagatcccattacagatggttgtgagccaccat
gtgtttggtgggaattgaactcaggacttctggagcaatagccagctctc
ttaacccctgagccatctctcagccctttaaattaggtttttaatagaac
attctgtacttattttattaaggaagatatgatgtttcctgaaggggcca
gaatccagatttaaaaaggtgatgggcatatttagcttaggatataaaga
aaaatctttagttactcagacattatttatccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55897656_55898564
seq2: B6Ng01-208B12.b_47_951 (reverse)

seq1  ATCATGAAGCCATAGCCTTTGTGACCTAGTCATTTTCCCCAAACTTCACC  50
      |||| ||||||||| |||||| |||||||||||||  ||| |||||||||
seq2  ATCA-GAAGCCATA-CCTTTGGGACCTAGTCATTT--CCCCAACTTCACC  46

seq1  TGTCGACACTTCGTGCCTTGGGAACCACCTTCCAGCAACGGAGTCTTTGG  100
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTCG-CACTTCGTGCCTGGGGAACCACCTTCCAGCAACGGAGTCTTTGG  95

seq1  GGACACGGGCCTACCTGCCTGAGGACATAGGAAAAGCCTGAAGTGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGGCCTACCTGCCTGAGGACATAGGAAAAGCCTGAAGTGGGAGA  145

seq1  AACAATGAAAAAACAACCAGTGATGGCCGACTAGGCCATC-TTTTGATGC  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACAATGAAAAAACAACCAGTGATGGCCGACTAGGCCATCTTTTTGATGC  195

seq1  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  245

seq1  GTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTACTTTCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTACTTTCTCT  295

seq1  AGCTCCTTCATTGGGGACTTTTGGTATAGCATTGCAAATGTAAATGAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTCATTGGGGACTTTTGGTATAGCATTGCAAATGTAAATGAGTG  345

seq1  AAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA  395

seq1  CAACCAAAGGAAACGACAAGCTGACAGACACTTTACAAGTTTCCAAACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAGGAAACGACAAGCTGACAGACACTTTACAAGTTTCCAAACAC  445

seq1  CCATACATGTATAAAAATGTGCTCAGTCAATCTGGGAAATTTCAAAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATGTATAAAAATGTGCTCAGTCAATCTGGGAAATTTCAAAGAAA  495

seq1  ACAAACAAACAAACAAACAAACAAAAGAAAACAAACAAAACCCAGGTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAAAGAAAACAAACAAAACCCAGGTAAG  545

seq1  GTACAGCTGAGAGTGTGTGTTGGTGAAGACTCAGAGTAATGGGAGCCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTGAGAGTGTGTGTTGGTGAAGACTCAGAGTAATGGGAGCCTCC  595

seq1  ACTGGAGCGTAACCTGACACCACTGTGATGGTTTTGTGCACTGGCTTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCGTAACCTGACACCACTGTGATGGTTTTGTGCACTGGCTTGAC  645

seq1  CACACCTTAGAGGAGAACAGCAATTTCTCATCTGGTTCCTAGGCAACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTAGAGGAGAACAGCAATTTCTCATCTGGTTCCTAGGCAACAGA  695

seq1  ATTATATGCACCTGTATTGCTCTGCATGGAACTGACTCATACGGAAACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGCACCTGTATTGCTCTGCATGGAACTGACTCATACGGAAACTG  745

seq1  CCCAACGTCCATTAGCAGCAGAATGTATAAATAAATGGTCTATTCATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACGTCCATTAGCAGCAGAATGTATAAATAAATGGTCTATTCATAAA  795

seq1  TACCCTATCAAAATGAAGGAACCGAAAACATATTGTGTGACTTCCTGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTATCAAAATGAAGGAACCGAAAACATATTGTGTGACTTCCTGAGG  845

seq1  AGACACAAAGAAATGCTTGTTCACTTCAAATAGGGCATAGGCAGACTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAGAAATGCTTGTTCACTTCAAATAGGGCATAGGCAGACTTGG  895

seq1  GAAAGAATTC  909
      ||||||||||
seq2  GAAAGAATTC  905

seq1: chr14_55777555_55778698
seq2: B6Ng01-208B12.g_65_1200

seq1  GAATTCACTTTGTAGACCAGGCTGGGCTCAAACTCATGGAGATCTACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGGCTCAAACTCATGGAGATCTACCTG  50

seq1  CCTCTGCCCTGAGAATGCTGAGATCAAAGGCGTGCACCATCATGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTGAGAATGCTGAGATCAAAGGCGTGCACCATCATGCCCAGC  100

seq1  ACTACCATTTGGAAAATTAAAAATAAGGGTTTTTTCCTACTTAAAATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCATTTGGAAAATTAAAAATAAGGGTTTTTTCCTACTTAAAATTAG  150

seq1  AATTTAAATTTTTTTAAAAAAGATTTATTTATTTTATGTATGTGAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATTTTTTTAAAAAAGATTTATTTATTTTATGTATGTGAGTACA  200

seq1  CTGTAGCTGTCTTCAGACACACCAGAAGAGGACATTGGATCTCATTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGTCTTCAGACACACCAGAAGAGGACATTGGATCTCATTACAG  250

seq1  ATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTG  300

seq1  GAAGAGCAGCCAGTGGTCATAACCACTGAACCATGTCTCTAGCCCTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCCAGTGGTCATAACCACTGAACCATGTCTCTAGCCCTAAGT  350

seq1  TTTAAAATTTTTTAAATATTAAAATGTAATTACATCATTTCCTCCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTTTTAAATATTAAAATGTAATTACATCATTTCCTCCTCTCC  400

seq1  CTTCTTCCTTCCAACCCCTCCTGTGGAGCATCTTGCTCCTTCTCTCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTTCCAACCCCTCCTGTGGAGCATCTTGCTCCTTCTCTCTGGA  450

seq1  ATTTTTAGCCTTAAAAAATAAATATCAATTAAATATCATATATATGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCCTTAAAAAATAAATATCAATTAAATATCATATATATGCCTA  500

seq1  CATACATAACGCAACCTTTACAGTCAGCTTACTGTGACACACCACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAACGCAACCTTTACAGTCAGCTTACTGTGACACACCACACACA  550

seq1  CACACACACACACACACATACACACACGCCTGTGTGTGTGCCTGTGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATACACACACGCCTGTGTGTGTGCCTGTGTCCC  600

seq1  GTCCCTTTTCTCTAGGCTGGAAGGAGTCTTGGATGAGACCTTTTTCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTTCTCTAGGCTGGAAGGAGTCTTGGATGAGACCTTTTTCCAAT  650

seq1  TAACTAAACCACCTACTTTTCTTTATCTTCTGGGCGTTTACTGTGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAACCACCTACTTTTCTTTATCTTCTGGGCGTTTACTGTGAAAAG  700

seq1  ACTTTATAAACAATTTTGAATTTTTAGCTAATATGTATAAAACATCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAAACAATTTTGAATTTTTAGCTAATATGTATAAAACATCCATT  750

seq1  ATAATCACATTTATCTTTCTTTAATAAAAGTGGGTCATGTAATTTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACATTTATCTTTCTTTAATAAAAGTGGGTCATGTAATTTTTAAA  800

seq1  ATTAGTTTAAAAAAGTATTTATTTGTATATGAGTGAACTATCTTCACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTAAAAAAGTATTTATTTGTATATGAGTGAACTATCTTCACACA  850

seq1  CACCCAGAAAAGGAAATCAGATCCCATTACAGATGGTTGTGAGCCACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAAAAGGAAATCAGATCCCATTACAGATGGTTGTGAGCCACCAT  900

seq1  GTGTTTGGTGGGAATTGAACTCAGGACTTCTGGAGCAATAGCCAGCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGTGGGAATTGAACTCAGGACTTCTGGAGCAATAGCCAGCTCTC  950

seq1  TTAACCCCTGAGCCATCTCTCCAGCCCTTAAATTTAG--TTTTTATAGAA  998
      |||||||||||||||||||| |||||||| || ||||  |||| ||||||
seq2  TTAACCCCTGAGCCATCTCT-CAGCCCTTTAAATTAGGTTTTTAATAGAA  999

seq1  CATTCTGTACTTATTTTA-TAAGG-AGATAATGAATGTTTTCCTGAAGGG  1046
      |||||||||||||||||| ||||| |||| ||| ||| ||||||||||||
seq2  CATTCTGTACTTATTTTATTAAGGAAGAT-ATG-ATG-TTTCCTGAAGGG  1046

seq1  G-CAGATCACAGATTTAAAAAAAGTGATGGGAATATTTTAGGCTAAGAAT  1095
      | ||||   ||||||| ||||| |||||||| ||||||   ||| || ||
seq2  GCCAGAATCCAGATTT-AAAAAGGTGATGGGCATATTT--AGCTTAGGAT  1093

seq1  ATAAAAAGAAAAAAATCTTTAGTTAACTCAGACAATTATTATACCATTT  1144
      ||||    | |||||||||||||| |||||||| ||||||   ||||||
seq2  ATAA----AGAAAAATCTTTAGTT-ACTCAGAC-ATTATTTATCCATTT  1136