BAC Information

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BAC

Clone NameB6Ng01-209P22
Chromosome13 (Build37)14 (Build37)
Map Location 29,330,212 - 29,330,55296,872,779 - 96,873,336
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209P22.bB6Ng01-209P22.g
ACCGA028455GA028456
length767971
definitionB6Ng01-209P22.b B6Ng01-209P22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,330,212 - 29,330,552)(96,872,779 - 96,873,336)
sequence
gaattcatttactttaaagtgtttccagtcaaggccctttaccaagacgt
accaggatttctgtcatatttcagcaaaccattcttgggttagataaaca
tattcatcctgctgtctccagtctctttttagtccttatgaatttctgtt
actactccaatatgtctgtttcttgttattgttgctagtggggatgaggg
ctgtacatttctttcttttgttttttcttttctttttttttttttttttt
tttgagacagtgtttttctgtatagccatggctgtcctggaactcacttt
gtagaccaagctggcctcaaacaaagaaatccgatattaaaatggctact
ccagcttgtttcttcagaccatttgcttggaaaattgttttccagccttt
cactctgaggtagtgtctatctttttccctgagatgggtttcctgtaagc
agcagaatgttgggtcctgtttgtgtagccagtctgttagtctatgtctt
tttattggggagttgagaccattgatgttaagagatattaaggaaaagta
attgttgcttcctgttatttttgttgtttagttggcattctgttcttgtg
gctgtcttcttttagttttgttgagggattatcttcttgttttttctagg
gcgtggttcccgtccttgcatcatcctgagtgaggtaacacattcacaaa
ggaactcagacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatat
gaattctataacccatggcatatattcaacattaagtagtcagcaaagta
taatggtatccagaccttgggcactaactctgcagccagttccacaacac
ccaaggaagcttgactcccaggtactctcacaagcccagaatcataggcg
aggaggccaaaacatcttccccaatgctgggagtaactgggaccagcagg
atccagggattcagcaatacaatggcatgggtttcttccagtctgagtcg
gtgccctgagccgacaaccagaggacggtccactcccaggtgctttaaca
tgcccaggatcataggatgagaggatctcaggagcttggtcacaccagaa
tttcaggatcccagaggcagcttcactcccaggggctctgacaaacccag
aatctcattatcacaggatcccagaatcacaggatcacagtgacagctga
acactgctgacaaaagcaggattgcaggacagaaaggctccagtcggaga
cagcaagctcaggtagcaggagagataaccagatggctagaggcaagtgc
aagaacataagtacctgaaatcaaggctacttggtatcatgagaacccag
ttctcaaaacacaagtcctggattcctcatcacaacagaaaagcaagatt
cagatttaaaaccacataatatgatgatagtacctgacttttttgaaaat
ttttattagatattttctttatttacatttcaaatgttatcccctttgct
agtttcccctccaaaaactccctatcccatcctccctcccctctatgagg
gtgttcccccacgaaacccacccatgcccacctacttgccctggcattcc
ccctacactagggcattgagtgttcatgagaccaagggtgtctcctccca
ttgatgtcctacaaatccatgctttgctacatatgcagctggagccatgg
gaacactttgttgctgattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29330212_29330552
seq2: B6Ng01-209P22.b_377_716 (reverse)

seq1  CAAGGACGGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACGGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACA  50

seq1  AAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAA  100
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  AAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAAC-TAAACAACAAA  99

seq1  AATAACAGGAAGCAATAATTACTTTTCCTTAATATCTCTTAATATCAATG  150
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATG  149

seq1  GTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAA  199

seq1  CAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGA  249

seq1  CAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATG  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATG  299

seq1  GTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGAT  341
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGAT  340

seq1: chr14_96872779_96873336
seq2: B6Ng01-209P22.g_67_624

seq1  GAATTCTATAACCCATGGCATATATTCAACATTAAGTAGTCAGCAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAACCCATGGCATATATTCAACATTAAGTAGTCAGCAAAGTA  50

seq1  TAATGGTATCCAGACCTTGGGCACTAACTCTGCAGCCAGTTCCACAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTATCCAGACCTTGGGCACTAACTCTGCAGCCAGTTCCACAACAC  100

seq1  CCAAGGAAGCTTGACTCCCAGGTACTCTCACAAGCCCAGAATCATAGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAGCTTGACTCCCAGGTACTCTCACAAGCCCAGAATCATAGGCG  150

seq1  AGGAGGCCAAAACATCTTCCCCAATGCTGGGAGTAACTGGGACCAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCAAAACATCTTCCCCAATGCTGGGAGTAACTGGGACCAGCAGG  200

seq1  ATCCAGGGATTCAGCAATACAATGGCATGGGTTTCTTCCAGTCTGAGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGATTCAGCAATACAATGGCATGGGTTTCTTCCAGTCTGAGTCG  250

seq1  GTGCCCTGAGCCGACAACCAGAGGACGGTCCACTCCCAGGTGCTTTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGAGCCGACAACCAGAGGACGGTCCACTCCCAGGTGCTTTAACA  300

seq1  TGCCCAGGATCATAGGATGAGAGGATCTCAGGAGCTTGGTCACACCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGATCATAGGATGAGAGGATCTCAGGAGCTTGGTCACACCAGAA  350

seq1  TTTCAGGATCCCAGAGGCAGCTTCACTCCCAGGGGCTCTGACAAACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATCCCAGAGGCAGCTTCACTCCCAGGGGCTCTGACAAACCCAG  400

seq1  AATCTCATTATCACAGGATCCCAGAATCACAGGATCACAGTGACAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATTATCACAGGATCCCAGAATCACAGGATCACAGTGACAGCTGA  450

seq1  ACACTGCTGACAAAAGCAGGATTGCAGGACAGAAAGGCTCCAGTCGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTGACAAAAGCAGGATTGCAGGACAGAAAGGCTCCAGTCGGAGA  500

seq1  CAGCAAGCTCAGGTAGCAGGAGAGATAACCAGATGGCTAGAGGCAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCTCAGGTAGCAGGAGAGATAACCAGATGGCTAGAGGCAAGTGC  550

seq1  AAGAACAT  558
      ||||||||
seq2  AAGAACAT  558