BAC Information

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BAC

Clone NameB6Ng01-211H08
Chromosome14 (Build37)
Map Location 116,001,179 - 116,015,558
singlet/doubletdoublet
Overlap geneGpc5
Upstream geneLOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211H08.bB6Ng01-211H08.g
ACCGA029521GA029522
length5001,108
definitionB6Ng01-211H08.b B6Ng01-211H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,015,053 - 116,015,558)(116,001,179 - 116,002,271)
sequence
tgcaccactcaatggccttgtgattatccctaatatttacaaagtgatac
aactgcatgtttgaagataaattataagtacaaactagtgaataatagca
aggataacatagtaaccagtagagtcatatgcagtgtatacatttcaaat
gtatttgacattttatttttttcttagtcaatctatctcagagctcatac
caaccacaaatataatcattttattgcatttgttgttatgactgtcttaa
gttagaaaatagactgtctctttcaaatgatttaagaaaaaattatttat
tagattgaatgcatatgtagtagccagagtcagtaatcatatgtatcctt
agattttttttaaagatatttttaaggaatgtgattatacttaggtacat
aatatttaaaacaaattactctgtatatgtgtgtttgtgtgttgtatact
agttcagtcttatgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg


tatactacttagaacctcatttgttgatacctcctgctacttatctctgg
tgaattttcaagtaattttgactattctggatctgaagatcttccaatat
aggttacttccagttggttgtgtcattattggtcagttgtttcaagctat
gtcatgactggtcagttgtttccatttgctaattcatgactggccagttt
tcaggtgcaatgtcatggtttgtcagttatttcgaggtgctaggtcatga
ttggacagttatttccagctgatatttcatgattggtctgttgtttctag
gggctgtgtccttccttaacagtcatgtttcatttttatttttggttttt
actccataatttattagtgttcaactattttaggtttgcttcacaaccct
tttaaaagaagttctgattgaagtagtatggcaattcagccttcattgct
cttatctgcatagaaaattcttgctctataattgccactgttgtgatcag
attaaaaatttggaatactcagctaaaattatgttgatgttttgttttat
aaaaataaagttcaactaattcctgtaacatttttttttatcccactata
catttaagtttggttctttaagagtaacatgggtgtttttttgtttgttt
gtttgttttttccttagcattgcagagctgagcactgtgctgggctcagg
ataggcttcaactgatcttgactaagtgaaaagccaattgaattgatcta
gaataattgtaatttcactttttgacatggttagtttaagatggcatgta
gtatgtcaaaatagaatttagaaaggaaacggctttgatttgagataccg
cggtaagtgaccactcattcagtgaattggatctccactgaacctagcta
ggtattacttcccggcctggtgctgtgtcagtgactcatactgaagttta
caagattttttgtttaaatttggtttttataaaacaacaaaacaagtgac
taaatattttcttcattgatagttatttggtaattagtatgaaaattcta
aatttattaaaaatatactgttatatgaaatatcatagtatttccataac
tagaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116015053_116015558
seq2: B6Ng01-211H08.b_45_550 (reverse)

seq1  CACACACACACACACACACACACACACACATATACACATAAGACTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATACACATAAGACTGAACT  50

seq1  AGTATACAACACACAAACACACATATACAGAGTAATTTGTTTTAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAACACACAAACACACATATACAGAGTAATTTGTTTTAAATATT  100

seq1  ATGTACCTAAGTATAATCACATTCCTTAAAAATATCTTTAAAAAAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTAAGTATAATCACATTCCTTAAAAATATCTTTAAAAAAAATCT  150

seq1  AAGGATACATATGATTACTGACTCTGGCTACTACATATGCATTCAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACATATGATTACTGACTCTGGCTACTACATATGCATTCAATCTA  200

seq1  ATAAATAATTTTTTCTTAAATCATTTGAAAGAGACAGTCTATTTTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATTTTTTCTTAAATCATTTGAAAGAGACAGTCTATTTTCTAAC  250

seq1  TTAAGACAGTCATAACAACAAATGCAATAAAATGATTATATTTGTGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGTCATAACAACAAATGCAATAAAATGATTATATTTGTGGTTG  300

seq1  GTATGAGCTCTGAGATAGATTGACTAAGAAAAAAATAAAATGTCAAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCTCTGAGATAGATTGACTAAGAAAAAAATAAAATGTCAAATAC  350

seq1  ATTTGAAATGTATACACTGCATATGACTCTACTGGTTACTATGTTATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGTATACACTGCATATGACTCTACTGGTTACTATGTTATCCT  400

seq1  TGCTATTATTCACTAGTTTGTACTTATAATTTATCTTCAAACATGCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATTCACTAGTTTGTACTTATAATTTATCTTCAAACATGCAGTT  450

seq1  GTATCACTTTGTAAATATTAGGGATAATCACAAGGCCATTGAGTGGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTTTGTAAATATTAGGGATAATCACAAGGCCATTGAGTGGTGCA  500

seq1  GAATTC  506
      ||||||
seq2  GAATTC  506


seq1: chr14_116001179_116002271
seq2: B6Ng01-211H08.g_67_1174

seq1  TATACTACTTAGAACCTCATTTGTTGATACCTCCTGCTACTTATCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACTTAGAACCTCATTTGTTGATACCTCCTGCTACTTATCTCTGG  50

seq1  TGAATTTTCAAGTAATTTTGACTATTCTGGATCTGAAGATCTTCCAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTCAAGTAATTTTGACTATTCTGGATCTGAAGATCTTCCAATAT  100

seq1  AGGTTACTTCCAGTTGGTTGTGTCATTATTGGTCAGTTGTTTCAAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTTCCAGTTGGTTGTGTCATTATTGGTCAGTTGTTTCAAGCTAT  150

seq1  GTCATGACTGGTCAGTTGTTTCCATTTGCTAATTCATGACTGGCCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACTGGTCAGTTGTTTCCATTTGCTAATTCATGACTGGCCAGTTT  200

seq1  TCAGGTGCAATGTCATGGTTTGTCAGTTATTTCGAGGTGCTAGGTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCAATGTCATGGTTTGTCAGTTATTTCGAGGTGCTAGGTCATGA  250

seq1  TTGGACAGTTATTTCCAGCTGATATTTCATGATTGGTCTGTTGTTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGTTATTTCCAGCTGATATTTCATGATTGGTCTGTTGTTTCTAG  300

seq1  GGGCTGTGTCCTTCCTTAACAGTCATGTTTCATTTTTATTTTTGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTCCTTCCTTAACAGTCATGTTTCATTTTTATTTTTGGTTTTT  350

seq1  ACTCCATAATTTATTAGTGTTCAACTATTTTAGGTTTGCTTCACAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATAATTTATTAGTGTTCAACTATTTTAGGTTTGCTTCACAACCCT  400

seq1  TTTAAAAGAAGTTCTGATTGAAGTAGTATGGCAATTCAGCCTTCATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAAGTTCTGATTGAAGTAGTATGGCAATTCAGCCTTCATTGCT  450

seq1  CTTATCTGCATAGAAAATTCTTGCTCTATAATTGCCACTGTTGTGATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGCATAGAAAATTCTTGCTCTATAATTGCCACTGTTGTGATCAG  500

seq1  ATTAAAAATTTGGAATACTCAGCTAAAATTATGTTGATGTTTTGTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTTGGAATACTCAGCTAAAATTATGTTGATGTTTTGTTTTAT  550

seq1  AAAAATAAAGTTCAACTAATTCCTGTAACATTTTTTTTTATCCCACTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAGTTCAACTAATTCCTGTAACATTTTTTTTTATCCCACTATA  600

seq1  CATTTAAGTTTGGTTCTTTAAGAGTAACATGGGTGTTTTTTTGTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGTTTGGTTCTTTAAGAGTAACATGGGTGTTTTTTTGTTTGTTT  650

seq1  GTTTGTTTTTTCCTTAGCATTGCAGAGCTGAGCACTGTGCTGGGCTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTTCCTTAGCATTGCAGAGCTGAGCACTGTGCTGGGCTCAGG  700

seq1  ATAGGCTTCAACTGATCTTGACTAAGTGAAAAGCCAATTGAATTGATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTCAACTGATCTTGACTAAGTGAAAAGCCAATTGAATTGATCTA  750

seq1  GAATAATTGTAATTTCACTTTTTGACATGGTTAGTTTAAGATGGCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGTAATTTCACTTTTTGACATGGTTAGTTTAAGATGGCATGTA  800

seq1  GTATGTCAAAATAGAATTTAGAAAGGAAACGGCTTTGA-TTGAGATACCG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTATGTCAAAATAGAATTTAGAAAGGAAACGGCTTTGATTTGAGATACCG  850

seq1  CGGTAAGTGACCACTCATTCAGTGAA-TGGATCTCCACTGAA-CTAGCTA  897
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CGGTAAGTGACCACTCATTCAGTGAATTGGATCTCCACTGAACCTAGCTA  900

seq1  GGTATTACTTCC--GGCTGGTGCTGTGTCAGTGACTCATACTG-AGTTTA  944
      ||||||||||||  | ||||||||||||||||||||||||||| ||||||
seq2  GGTATTACTTCCCGGCCTGGTGCTGTGTCAGTGACTCATACTGAAGTTTA  950

seq1  CAAGATTTTTGTTTTAAATTT-GTTTTTATAAAACAACAAAACAAGTGAC  993
      ||||||||||  ||||||||| ||||||||||||||||||||||||||||
seq2  CAAGATTTTTTGTTTAAATTTGGTTTTTATAAAACAACAAAACAAGTGAC  1000

seq1  TAAATA-TTTCTACA-TGATAGTTATTT-GTAA-TAGTATGAAAAATCTA  1039
      |||||| ||||| || |||||||||||| |||| ||||||||||| ||||
seq2  TAAATATTTTCTTCATTGATAGTTATTTGGTAATTAGTATGAAAATTCTA  1050

seq1  AATTTA-TAAAAATATA-TGTTATGGAAAATA-CATAGTATTTTCATAA-  1085
      |||||| |||||||||| ||||||   ||||| |||||||||| ||||| 
seq2  AATTTATTAAAAATATACTGTTATATGAAATATCATAGTATTTCCATAAC  1100

seq1  TAGAAAAC  1093
      ||||||||
seq2  TAGAAAAC  1108


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