BAC Information

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BAC

Clone NameB6Ng01-211O21
Chromosome19 (Build37)14 (Build37)
Map Location 8,166,192 - 8,166,90097,654,796 - 97,655,855
singlet/doubletsingletsinglet
Overlap geneEG434674
Upstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
Downstream geneLOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211O21.bB6Ng01-211O21.g
ACCGA029857GA029858
length1,0841,055
definitionB6Ng01-211O21.b B6Ng01-211O21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,166,192 - 8,166,900)(97,654,796 - 97,655,855)
sequence
gaattcttaagactaaagagcaggtgcaaaatgaattcctgttacttcaa
acttaatacaaaaagaaatatcccagttgaagtgaacacaagttttagct
tgtgaatggcttcagatgagactgtagcatctctaatccttggtttatga
tctgatctgatgcaggaatatactttcattgtcatgagaagaatatagaa
agctacctgaggaacgtttaatagaagagtgctgttttcatttcagtagt
ttatgtgggtagagtttcactaacactaatgaagtatctgggactcaatc
tgtacaaattaatcaaattagtaaccttcatttctttttttatgttaatt
ttttattaggtattttccttatttacatttccaatgctatcccaaaagtc
ccccatacccccccccactcccctacccacccattcccattttttggccc
tggctttcccctgtactggggcatataaagtttgcctgtccaatgggctt
ctctttccagtgatgttcgacaaggccatcttttgatacatatgcagcta
gagtcaagagctccggggtactagttagttcataatgttgttccacctat
agggttgcagttccctttagctccttgggtactttctctagctcctccat
tgggggccctgtgatccatccaatagctgactgtgagcatccacttctgt
ttgctaggcctctgcatagtctcacaagagacagctatatctgggtcttt
cagaaaaatcttgctagtgtatgcaatggtgtcagtgtttggaagctgat
tatgggatggatccctggatatggcagtctctagatggtccatcctttcg
tcacagctccatacattgtctctgtaactccttccatgggtgttttgtac
ccaattacaagaaggggcaaagtgtcacactttggtcttcattcttcttg
agtttaatgtgtttgcaaattgtatcttaatatcttgggtatcctagttc
tgggctaatatccacttatcaatgagtacatattgatggagttccttgga
ttggttacctcactcaggatgatgcccctccatc
gaattcagaaatctgcctgcttctacctctgaaatgttagaattaaaggc
gtgtgccaccactgcccagctcactttcttttctaatagtttcagtgtat
ctgattttatgttgaggcctttgaccaattgaacttgaattttatacagt
gtgatcaagaactatctatatgcattctttttaatattggcatcaagaca
gaccagcaccatttgctgaagatgctttctcttctccattgtctatttct
tgtttctctataaaaaaaaaaatcaagtgtccataagtatatgaatttat
gtcaaacgttcttcttaaaaaataaaaatgacaattcagtttcatgcact
ctttgaagcatttttataaagtataacttgataaatatgattggagaatt
gaatagttacagtaatgaagtggatacaaattatattaataagtttataa
agttttcaaaaccaaggggcctctcttcccaatgatggccaactaggcca
tcttctgctacatatgcagctagagatatgaactctggggcactggttag
ttcatattgttgatcctcctataggattgcagacccctttagctccttgg
gtactttctctagctccttcattgggggccctgtgttccaacctatatga
ctgtgagcatccacttctgtatttgccatgcactggcatagcctcacaag
agacagctatatcagggtcctttcagcaaaaccttgctggcgtatgcaat
agtgtctgcatttggtggctgattatgggatgaatatcagggtggggcag
tctctggatggtccttccttttgactcagctccaaactttgtttcagtaa
ctccttccatgggtattttgttcccttgtttctgaaggcaggaatctgtg
aaactgtgagtccaagtcttttggaaacattttttttaatatatattcag
tcattgagaggctatttgtgcctgtctattctgtttctgtgttgatggtc
ttactgaattaaactgtgacgacgacatgggctctccacttatcttattc
tgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8166192_8166900
seq2: B6Ng01-211O21.b_533_1127 (reverse)

seq1  TGGA-GGGCATCATCCCGAGTGAGGTAACCCAATCACAAAGGAACTCTCA  49
      |||| ||||||||||| ||||||||||| |||||  | |||||||||   
seq2  TGGAGGGGCATCATCCTGAGTGAGGTAA-CCAAT--CCAAGGAACTCCAT  47

seq1  CAATATGTACTCACTGATAAGTGGATATTAGCCCTGAATCTTAGGATATC  99
      ||||||||||||| |||||||||||||||||||| |||   ||||||| |
seq2  CAATATGTACTCATTGATAAGTGGATATTAGCCCAGAA--CTAGGATACC  95

seq1  CAAGATA-TAAGATATAATTTGCTAAACACATTTAACTCAAGAGAACAAG  148
      ||||||| ||||||| ||||||| ||||||||| ||||||||        
seq2  CAAGATATTAAGATACAATTTGC-AAACACATTAAACTCAAG--------  136

seq1  ACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAACACCC  198
                                                        
seq2  --------------------------------------------------  136

seq1  ATGGAAGGAGTTACAGAGACAAAATTTGGAAGTGAATCCATGAAACTCAA  248
                                                      ||
seq2  ------------------------------------------------AA  138

seq1  GAAGGAAGACCCAAGTGTGGACTCTTTGCCCCTTCTTAGAATTGGGAACA  298
      ||| ||||||| |||||| ||| ||||||||||||||  ||||||| |||
seq2  GAATGAAGACCAAAGTGT-GACACTTTGCCCCTTCTTGTAATTGGGTACA  187

seq1  AGACATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAA  348
      | ||| |||||||||||||||||||||||| || |||||||| ||| |||
seq2  AAACACCCATGGAAGGAGTTACAGAGACAATGTATGGAGCTGTGACGAAA  237

seq1  GGATGGACCATCTATTGATTGCCATATCCAGAGATACATCCCATGATCAC  398
      ||||||||||||||  || |||||||||||| ||| |||||||| |||| 
seq2  GGATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATCAG  287

seq1  CTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGG  448
      ||||||||| ||||||||||||||||||||||||||||||| |||||| |
seq2  CTTCCAAACACTGACACCATTGCATACACTAGCAAGATTTTTCTGAAA-G  336

seq1  ACCCAGATATAGCTGTCTCTTGTAAGACTATGCCAGA-GCCTAGCAAACA  497
      ||||||||||||||||||||||| |||||||| |||| |||||||||  |
seq2  ACCCAGATATAGCTGTCTCTTGTGAGACTATG-CAGAGGCCTAGCAA--A  383

seq1  CAGAAGTGGATGCTCACAGTCAGCTGTTGAATGCACCACAGGGCCCCCAA  547
      ||||||||||||||||||||||||| ||| ||| | ||||||||||||||
seq2  CAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAA  433

seq1  TGGAGGAATTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTA  597
      |||||||  ||||||||| ||||||||| |||||||||||||||||||||
seq2  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTA  483

seq1  TAGGTGGAACAACAATATGAACTAAGTAGTACCCCGGAGCTCTTGTCTCT  647
      |||||||||||||| |||||||||| ||||||||||||||||||| ||||
seq2  TAGGTGGAACAACATTATGAACTAACTAGTACCCCGGAGCTCTTGACTCT  533

seq1  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGAAAAGAGA  697
      ||||||||||||||||||||||||||| ||||  |||||||| |||||||
seq2  AGCTGCATATGTATCAAAAGATGGCCTTGTCGAACATCACTGGAAAGAGA  583

seq1  GGCCCATTGGAC  709
       |||||||||||
seq2  AGCCCATTGGAC  595

seq1: chr14_97654796_97655855
seq2: B6Ng01-211O21.g_64_1118

seq1  GAATTCAGAAATCTGCCTGCTTCTACCTCTGAAATGTTAGAATTAAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCTTCTACCTCTGAAATGTTAGAATTAAAGGC  50

seq1  GTGTGCCACCACTGCCCAGCTCACTTTCTTTTCTAATAGTTTCAGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACCACTGCCCAGCTCACTTTCTTTTCTAATAGTTTCAGTGTAT  100

seq1  CTGATTTTATGTTGAGGCCTTTGACCAATTGAACTTGAATTTTATACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTATGTTGAGGCCTTTGACCAATTGAACTTGAATTTTATACAGT  150

seq1  GTGATCAAGAACTATCTATATGCATTCTTTTTAATATTGGCATCAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAAGAACTATCTATATGCATTCTTTTTAATATTGGCATCAAGACA  200

seq1  GACCAGCACCATTTGCTGAAGATGCTTTCTCTTCTCCATTGTCTATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCACCATTTGCTGAAGATGCTTTCTCTTCTCCATTGTCTATTTCT  250

seq1  TGTTTCTCTATAAAAAAAAAAATCAAGTGTCCATAAGTATATGAATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTATAAAAAAAAAAATCAAGTGTCCATAAGTATATGAATTTAT  300

seq1  GTCAAACGTTCTTCTTAAAAAATAAAAATGACAATTCAGTTTCATGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACGTTCTTCTTAAAAAATAAAAATGACAATTCAGTTTCATGCACT  350

seq1  CTTTGAAGCATTTTTATAAAGTATAACTTGATAAATATGATTGGAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCATTTTTATAAAGTATAACTTGATAAATATGATTGGAGAATT  400

seq1  GAATAGTTACAGTAATGAAGTGGATACAAATTATATTAATAAGTTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTACAGTAATGAAGTGGATACAAATTATATTAATAAGTTTATAA  450

seq1  AGTTTTCAAAACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAAAACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCA  500

seq1  TCTTCTGCTACATATGCAGCTAGAGATATGAACTCTGGGGCACTGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTACATATGCAGCTAGAGATATGAACTCTGGGGCACTGGTTAG  550

seq1  TTCATATTGTTGATCCTCCTATAGGATTGCAGACCCCTTTAGCTCCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGTTGATCCTCCTATAGGATTGCAGACCCCTTTAGCTCCTTGG  600

seq1  GTACTTTCTCTAGCTCCTTCATTGGGGGCCCTGTGTTCCAACCTATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCTCTAGCTCCTTCATTGGGGGCCCTGTGTTCCAACCTATATGA  650

seq1  CTGTGAGCATCCACTTCTGTATTTGCCATGCACTGGCATAGCCTCACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTATTTGCCATGCACTGGCATAGCCTCACAAG  700

seq1  AGACAGCTATATCAGGGTCCTTTCAGCAAAACCTTGCTGGCGTATGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTATATCAGGGTCCTTTCAGCAAAACCTTGCTGGCGTATGCAAT  750

seq1  AGTGTCTGCATTTGGTGGCTGATTATGGGATGAATATCAGGGTGGGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCATTTGGTGGCTGATTATGGGATGAATATCAGGGTGGGGCAG  800

seq1  TCTCTGGATGGTCCTTCCTTTTGACTCAGCTCCAAACTTTGTTTCAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGATGGTCCTTCCTTTTGACTCAGCTCCAAACTTTGTTTCAGTAA  850

seq1  CTCCTTCCATGGGTATTTTGTTCCCTTGTTTCTGAA-GCAGGAATCTGTG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCCTTCCATGGGTATTTTGTTCCCTTGTTTCTGAAGGCAGGAATCTGTG  900

seq1  AAACTGTGAGTCCAAGTC-TTTGGAAACATTTTTTTT-ATATATATTCAG  947
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  AAACTGTGAGTCCAAGTCTTTTGGAAACATTTTTTTTAATATATATTCAG  950

seq1  TCATTGAGAGGCTATTTTGTGCCTGTCTATTCTGTTTCTTGTGTTGTTTG  997
      |||||||||||||| ||||||||||||||||||||||| |||||||  ||
seq2  TCATTGAGAGGCTA-TTTGTGCCTGTCTATTCTGTTTC-TGTGTTG-ATG  997

seq1  GTCTTTACTTGAATTAAACTGTGACAGACGACATGGGTTTCTCACCTTAA  1047
      ||| |||| |||||||||||||||| |||||||||||  ||||  ||| |
seq2  GTC-TTAC-TGAATTAAACTGTGAC-GACGACATGGG-CTCTCCACTT-A  1042

seq1  TCTTATTCTGACT  1060
      |||||||||||||
seq2  TCTTATTCTGACT  1055