BAC Information

Click to search

BAC

Clone NameB6Ng01-214P09
Chromosome14 (Build37)
Map Location 38,284,111 - 38,403,061
singlet/doubletdoublet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214P09.bB6Ng01-214P09.g
ACCGA032067GA032068
length8121,127
definitionB6Ng01-214P09.b B6Ng01-214P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,284,111 - 38,284,817)(38,401,924 - 38,403,061)
sequence
gaattcactgcagaaggttaaagcaaaaaccacagaagaatgtatttgac
tggcatgcttcctctggcttgctcagctacctttcttatatagcccaggc
caagttgccaagaaatggcactgtctacaatgagatgcatccttttgtat
cacttaccaattttaaaaatgcctacacacacgttcataagccaatctga
ccaagataactttttgacccacgctaccgtctcgccagcaaaacgcacgc
aggccacttggatccttctgcagtacagctttaatacatctcgagagata
gatgatcagcttcaggagaggagacccagagagcagaaaacccttccctt
ttataggctgcgaaaaaacggttggagatgtgcaccactgggattggctg
cccactatcagtcagttaacaccacgagaaaggcagggctcaagtaatgg
aatgataccctgacgcctgcgcacattttactatgagcaacggatgtcag
cgccatcttgtaacggcgactgtgagggcggctcctcacaacttttcagt
taaggtttcctatttccaagagtgtgaagttggcaacaaagattagccaa
cgtgggatggatattagagctacagagtaaagtaaagagaaacgggtaaa
tagaaggagtattggaatattcttcgaataaatggaatctaaagattatt
tttgatatagagacttactgttgaggagtaaaaagaaatgagtggatgaa
agcaagcaaaaatgagatagaaattaagagggtaagtgtatggatggtag
ggtaaggggaaa

gaattcagagaaaccatgaaagtctcattttcaggattgtattcctacct
tgactttcaagaggtataaatctcttttgatgtttaatgttactagtggt
gcttactaaagtagtgtgatatttattcagctataagagtcctggtaaat
aggtgatttaataaataaatcatcatactttagaaaaatggatatattct
atattactgtgagtactacttatgcataaatatttcataagcttgtgttc
tttcttctcttaaatatttcttagcctccaggtagaatatcaaggctggt
ttgctcttgctgctgtgcagttccccacaggacccatggagacaaacata
ctttccttcattttgtttcataattgccctctaagatgcacaaaagtttt
aatttttatttatcttcttgtaacctgtaaatatcttcctgtcattgtct
ctgaaaataggaagaagaaacataaataaaggtcttccagcatgcttcac
tcctaaaaagaaagatttctatgtcctctttgctctgaaggaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaagatgcttttgtagtcacaccagacagc
agcagaggaaaggacacattctgagaagccttgccttccgagtccaaaac
catacttctgtgatggaaatcaatctttcttgtcagccattgcagatttg
ccaaggaatcaatgaagttaaatttacattgacctcagcagaatgatttt
tagtggcgtaaatacccttcaggctcttgtctggggtaattcaaacagat
agagacaagatacttggatttttttttttttctgagaaccacatggttag
tcagaaaaagtatagctggaccccgtgccacatggcatgtggggagtggt
tttaagaacttgaaattttgtagcataatttcagcaggatgactagaaac
tgccatgaataatgactttaataaaagataacatgaatgcctgcttaaaa
tggtgtcaaactactaatatcacaatatgacgaagggattattacttctc
atgttactgtgggcactgcagctcaggaagctatctgtgaatcatctggc
taggcttgacagagtgtgattcgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38284111_38284817
seq2: B6Ng01-214P09.b_148_855

seq1  TTGCCAAGAAATGGCACTGTCTACAATGAGATGCATCCTTTTGTATCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGAAATGGCACTGTCTACAATGAGATGCATCCTTTTGTATCACT  50

seq1  TACCAATTTTAAAAATGCCTACACACACGTTCATAAGCCAATCTGACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTTTAAAAATGCCTACACACACGTTCATAAGCCAATCTGACCAA  100

seq1  GATAACTTTTTGACCCACGCTACCGTCTCGCCAGCAAAACGCACGCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTTTTGACCCACGCTACCGTCTCGCCAGCAAAACGCACGCAGGC  150

seq1  CACTTGGATCCTTCTGCAGTACAGCTTTAATACATCTCGAGAGATAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGATCCTTCTGCAGTACAGCTTTAATACATCTCGAGAGATAGATG  200

seq1  ATCAGCTTCAGGAGAGGAGACCCAGAGAGCAGAAAACCCTTCCCTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTCAGGAGAGGAGACCCAGAGAGCAGAAAACCCTTCCCTTTTAT  250

seq1  AGGCTGCGAAAAAACGGTTGGAGATGTGCACCACTGGGATTGGCTGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCGAAAAAACGGTTGGAGATGTGCACCACTGGGATTGGCTGCCCA  300

seq1  CTATCAGTCAGTTAACACCACGAGAAAGGCAGGGCTCAAGTAATGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTCAGTTAACACCACGAGAAAGGCAGGGCTCAAGTAATGGAATG  350

seq1  ATACCCTGACGCCTGCGCACATTTTACTATGAGCAACGGATGTCAGCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGACGCCTGCGCACATTTTACTATGAGCAACGGATGTCAGCGCC  400

seq1  ATCTTGTAACGGCGACTGTGAGGGCGGCTCCTCACAACTTTTCAGTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAACGGCGACTGTGAGGGCGGCTCCTCACAACTTTTCAGTTAAG  450

seq1  GTTTCCTATTTCCAAGAGTGTGAAGTTGGCAACAAAGATTAGCCAACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTATTTCCAAGAGTGTGAAGTTGGCAACAAAGATTAGCCAACGTG  500

seq1  GGATGGATATTAGAGCTACAGAGTAAAGTAAAGAGAAACGGGTAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATATTAGAGCTACAGAGTAAAGTAAAGAGAAACGGGTAAATAGA  550

seq1  AGGAGTATTGGAATATTCTTCGAATAAATGGAATCTAAAGATTATTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTATTGGAATATTCTTCGAATAAATGGAATCTAAAGATTATTTTTG  600

seq1  ATATAGAGACTTACTGTTGAGGAGTAAAAAGAAATGAGTGGATGAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGACTTACTGTTGAGGAGTAAAAAGAAATGAGTGGATGAAAGCA  650

seq1  AGCAAAAATGAGATAGAAATTAAGAGGGTAAGTGTATGGATGGTA-GGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCAAAAATGAGATAGAAATTAAGAGGGTAAGTGTATGGATGGTAGGGTA  700

seq1  AGGGAAAA  707
      |||| |||
seq2  AGGGGAAA  708


seq1: chr14_38401924_38403061
seq2: B6Ng01-214P09.g_65_1191 (reverse)

seq1  TCATCAGAATCACACTTCCTGTGTCAAGCCCTAGCCAGATTTGATTCACA  50
      ||||| ||||||||    || ||||||| ||||||||||  |||||||||
seq2  TCATC-GAATCACA----CTCTGTCAAG-CCTAGCCAGA--TGATTCACA  42

seq1  GGAATAGCTTCCCTGAGCTGCAAGTTGCCCAACAGTAACATGAAGAAGGT  100
      |  ||||||| |||||||||||   ||||| ||||||||||| |||| ||
seq2  G--ATAGCTT-CCTGAGCTGCA--GTGCCC-ACAGTAACATG-AGAA-GT  84

seq1  AATAATCCCTTTGGTCATA-TGTGATATATGTAGTTTGACACATTTTTAA  149
      ||||||||| || |||||| ||||||||  ||||||||||||  ||||||
seq2  AATAATCCC-TTCGTCATATTGTGATATTAGTAGTTTGACACCATTTTAA  133

seq1  GCAGCCAATCAATGTTATCTTTTATTAAAGTCATTATTCATGGCAGTTTC  199
      |||| || || |||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATTC-ATGTTATCTTTTATTAAAGTCATTATTCATGGCAGTTTC  182

seq1  TAGTCATCCTGCTGAAATTATGCTACAAAATTTCAAG-TCTT-AAACCAC  247
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  TAGTCATCCTGCTGAAATTATGCTACAAAATTTCAAGTTCTTAAAACCAC  232

seq1  T-CCCACATGCCATGTGGCACGGGGTCCAGCTATAC-TCTTCTGACTAAC  295
      | |||||||||||||||||||||||||||||||||| | |||||||||||
seq2  TCCCCACATGCCATGTGGCACGGGGTCCAGCTATACTTTTTCTGACTAAC  282

seq1  CATGT-GTTCTCAGAAAAAAAAAAAAATCCAAGTATCTTGTCTCTATCTG  344
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTCTCAGAAAAAAAAAAAAATCCAAGTATCTTGTCTCTATCTG  332

seq1  TTTGAATTACCCCAGACAAGAGCCTGAA-GGTATTTACGCCACTAAAAAT  393
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGAATTACCCCAGACAAGAGCCTGAAGGGTATTTACGCCACTAAAAAT  382

seq1  CATTCTGCTGAGGTCAATGTAAATTTAACTTCATTGATTCCTTGGCAAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCTGAGGTCAATGTAAATTTAACTTCATTGATTCCTTGGCAAAT  432

seq1  CTGCAATGGCTGACAAGAAAGATTGATTTCCATCACAGAAGTATGGTTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGGCTGACAAGAAAGATTGATTTCCATCACAGAAGTATGGTTTT  482

seq1  GGACTCGGAAGGCAAGGCTTCTCAGAATGTGTCCTTTCCTCTGCTGCTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCGGAAGGCAAGGCTTCTCAGAATGTGTCCTTTCCTCTGCTGCTGT  532

seq1  CTGGTGTGACTACAAAAGCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGACTACAAAAGCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTT  582

seq1  TTTTCCTTCAGAGCAAAGAGGACATAGAAATCTTTCTTTTTAGGAGTGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCAGAGCAAAGAGGACATAGAAATCTTTCTTTTTAGGAGTGAA  632

seq1  GCATGCTGGAAGACCTTTATTTATGTTTCTTCTTCCTATTTTCAGAGACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGGAAGACCTTTATTTATGTTTCTTCTTCCTATTTTCAGAGACA  682

seq1  ATGACAGGAAGATATTTACAGGTTACAAGAAGATAAATAAAAATTAAAAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAAGATATTTACAGGTTACAAGAAGATAAATAAAAATTAAAAC  732

seq1  TTTTGTGCATCTTAGAGGGCAATTATGAAACAAAATGAAGGAAAGTATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCATCTTAGAGGGCAATTATGAAACAAAATGAAGGAAAGTATGT  782

seq1  TTGTCTCCATGGGTCCTGTGGGGAACTGCACAGCAGCAAGAGCAAACCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCATGGGTCCTGTGGGGAACTGCACAGCAGCAAGAGCAAACCAG  832

seq1  CCTTGATATTCTACCTGGAGGCTAAGAAATATTTAAGAGAAGAAAGAACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATATTCTACCTGGAGGCTAAGAAATATTTAAGAGAAGAAAGAACA  882

seq1  CAAGCTTATGAAATATTTATGCATAAGTAGTACTCACAGTAATATAGAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATGAAATATTTATGCATAAGTAGTACTCACAGTAATATAGAAT  932

seq1  ATATCCATTTTTCTAAAGTATGATGATTTATTTATTAAATCACCTATTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATTTTTCTAAAGTATGATGATTTATTTATTAAATCACCTATTTA  982

seq1  CCAGGACTCTTATAGCTGAATAAATATCACACTACTTTAGTAAGCACCAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTCTTATAGCTGAATAAATATCACACTACTTTAGTAAGCACCAC  1032

seq1  TAGTAACATTAAACATCAAAAGAGATTTATACCTCTTGAAAGTCAAGGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATTAAACATCAAAAGAGATTTATACCTCTTGAAAGTCAAGGTA  1082

seq1  GGAATACAATCCTGAAAATGAGACTTTCATGGTTTCTCTGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACAATCCTGAAAATGAGACTTTCATGGTTTCTCTGAATTC  1127


| Home | SequenceCutter | Blast | Download |