BAC Information

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BAC

Clone NameB6Ng01-216E13
Chromosome14 (Build37)
Map Location 69,279,992 - 69,281,179
singlet/doubletsinglet
Overlap genenone
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033
Downstream geneLOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216E13.bB6Ng01-216E13.g
ACCGA033015GA033016
length1,1721,181
definitionB6Ng01-216E13.b B6Ng01-216E13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatagaaaggagtgtcacccttctacctagagttattgacatg
cactcctgttagtgtgtgacgtttatgcaaatattgtgtatgaatgacag
acattcacatatttatagattctattcagtttgaactgagcaacaataaa
cccatgtttgaaaattgttcagcagcatagaacatgagtacaactaaatc
ttaaaaattgaaagaagagtttacaaaagttaaagattagagtttgacac
atgtggtgtttagtctcatatgtcaactcgattgagtcttcatgttcaga
catttgttcaaatattcttgggcctatttctgtgaaggtgtctcaacatg
aggataaggcttaacttaaaggactatgagcaagcagattactcttctca
ctgtgagtgagcctcatctaattagctgaaggcttcaaccaaataagact
gactcccctgagtcaggataatctatggactgtctttcaaacattcttga
gtcttctgataactttataatatttttgcatttaagtgtctgtaattatc
acatatgtggagatttatgccacctctccctgccacagccacactattga
ttttgtttctttgcagtatttattgatatagagtgtatcttgaatatagc
actctccttacacattggcagggtctcctttctccacccctttaggtgaa
agacagaaaatatgtgcataatattttcaccaagattccgccactggcca
catacagcagtctgtagggtataagagtgaacacactataacaacagtca
taagagcatcgcacaacttcaatcactcaaagaatacaagaaggggaaaa
caagccttgaagaaacacccaagaataagtaagtcaatgggatgagaaat
tagggagcatttatagagagagtttctacataagtaattgttcaatagca
ccaaatacccccaccccaacaaattaactatagaacaggactaagcatga
gcagtaacagatgtctttccaaagacagtttccatggagagataaagaca
catttgagcagatactgtcataaatatgtattattttgttaagctgtggc
ctctgaggtggagaaaatcagataatactcccttctaaaatgttaatagc
ctggaatgagatcctggatgat
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcaatgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgatccggtagaatacttacaaattaaaga
aattgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
gatttcttccacggctattagggcctggaaggtgctctctcgagcaggtg
aaaccactgggcagttaacaaagataatccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
ttcagagcaagccgcgcctctggtagaacagctaatctatgagcaagcca
caaaggagtgccgagcggctatagccccaagaaagaacaaaggcttacag
actggctcaggttcttgtcgagagcttggggacctctcaccaatgcagct
tagcggccgccatcctccatctcagacgctcatgggcagaaaatatcaga
ggacatgttttactgcgaagcctggcattttagaaagatgcagagctcca
gataaacaggagggactctcactcttgctctagtgtggcaggttatcctg
agcctgacatgtcgctctgtgaagatagcaagtcttccactgttatgtca
tcaactgagtgtgtccaaaaaacggggtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69279992_69281179
seq2: B6Ng01-216E13.b_44_1215

seq1  GAATTCAAATAGAAAGGAGTGTCACCCTTCTACCTAGAGTTATTGACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGAAAGGAGTGTCACCCTTCTACCTAGAGTTATTGACATG  50

seq1  CACTCCTGTTAGTGTGTGACGTTTATGCAAATATTGTGTATGAATGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGTTAGTGTGTGACGTTTATGCAAATATTGTGTATGAATGACAG  100

seq1  ACATTCACATATTTATAGATTCTATTCAGTTTGAACTGAGCAACAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACATATTTATAGATTCTATTCAGTTTGAACTGAGCAACAATAAA  150

seq1  CCCATGTTTGAAAATTGTTCAGCAGCATAGAACATGAGTACAACTAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTTGAAAATTGTTCAGCAGCATAGAACATGAGTACAACTAAATC  200

seq1  TTAAAAATTGAAAGAAGAGTTTACAAAAGTTAAAGATTAGAGTTTGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTGAAAGAAGAGTTTACAAAAGTTAAAGATTAGAGTTTGACAC  250

seq1  ATGTGGTGTTTAGTCTCATATGTCAACTCGATTGAGTCTTCATGTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGTTTAGTCTCATATGTCAACTCGATTGAGTCTTCATGTTCAGA  300

seq1  CATTTGTTCAAATATTCTTGGGCCTATTTCTGTGAAGGTGTCTCAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTCAAATATTCTTGGGCCTATTTCTGTGAAGGTGTCTCAACATG  350

seq1  AGGATAAGGCTTAACTTAAAGGACTATGAGCAAGCAGATTACTCTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAGGCTTAACTTAAAGGACTATGAGCAAGCAGATTACTCTTCTCA  400

seq1  CTGTGAGTGAGCCTCATCTAATTAGCTGAAGGCTTCAACCAAATAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGAGCCTCATCTAATTAGCTGAAGGCTTCAACCAAATAAGACT  450

seq1  GACTCCCCTGAGTCAGGATAATCTATGGACTGTCTTTCAAACATTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCTGAGTCAGGATAATCTATGGACTGTCTTTCAAACATTCTTGA  500

seq1  GTCTTCTGATAACTTTATAATATTTTTGCATTTAAGTGTCTGTAATTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGATAACTTTATAATATTTTTGCATTTAAGTGTCTGTAATTATC  550

seq1  ACATATGTGGAGATTTATGCCACCTCTCCCTGCCACAGCCACACTATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGGAGATTTATGCCACCTCTCCCTGCCACAGCCACACTATTGA  600

seq1  TTTTGTTTCTTTGCAGTATTTATTGATATAGAGTGTATCTTGAATATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTTTGCAGTATTTATTGATATAGAGTGTATCTTGAATATAGC  650

seq1  ACTCTCCTTACACATTGGCAGGGTCTCCTTTCTCCACCCCTTTAGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTTACACATTGGCAGGGTCTCCTTTCTCCACCCCTTTAGGTGAA  700

seq1  AGACAGAAAATATGTGCATAATATTTTCACCAAGATTCCGCCACTGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAATATGTGCATAATATTTTCACCAAGATTCCGCCACTGGCCA  750

seq1  CATACAGCAGTCTGTAGGGTATAAGAGTGAACACACTATAACAACAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGCAGTCTGTAGGGTATAAGAGTGAACACACTATAACAACAGTCA  800

seq1  TAAGAGCATCGCACAACTTCAATCACTCAAAGAATACAAGAAGGGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCATCGCACAACTTCAATCACTCAAAGAATACAAGAAGGGGAAAA  850

seq1  CAAGCCTTGAAGAAACACCCAAGAATAAGTAAGTCAATGGGATGAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTGAAGAAACACCCAAGAATAAGTAAGTCAATGGGATGAGAAAT  900

seq1  TAGGGAGCATTTATAGAAGAGAGTTTCTACATAAGTAATTGTTCAATAGC  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGGGAGCATTTATAG-AGAGAGTTTCTACATAAGTAATTGTTCAATAGC  949

seq1  ACCAAATACCCCCCACCCCCAACAAATTAACTATAGAACCAGGAACTAAG  1000
      |||||||||||||   |||||||||||||||||||||| |||| ||||||
seq2  ACCAAATACCCCC--ACCCCAACAAATTAACTATAGAA-CAGG-ACTAAG  995

seq1  CATGAGGCAGTAACAGATGTCTTTTCCAAAGACAGTTTCCATGGAGAGAT  1050
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGA-GCAGTAACAGATGTC-TTTCCAAAGACAGTTTCCATGGAGAGAT  1043

seq1  AAAGACACATTTGAGCAGATACTGTTCATAAATATGTATTA-TTTGTAAA  1099
      |||||||||||||||||||||||| |||||||||||||||| ||||| ||
seq2  AAAGACACATTTGAGCAGATACTG-TCATAAATATGTATTATTTTGTTAA  1092

seq1  GCTGTG--CTCTGAAGGGTGGAAGAAATATCAGGATAATACTTCCCCTCT  1147
      ||||||  ||||||  ||||| ||||| |||| |||||||| |||| |||
seq2  GCTGTGGCCTCTGA--GGTGG-AGAAA-ATCA-GATAATAC-TCCCTTCT  1136

seq1  AAAAAATGTTAATAGGCTGGAATGAAGAATCCTGGAATGAT  1188
        ||||||||||||| |||||||||   ||||||| |||||
seq2  --AAAATGTTAATAGCCTGGAATGA--GATCCTGG-ATGAT  1172