BAC Information

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BAC

Clone NameB6Ng01-216O02
Chromosome14 (Build37)
Map Location 48,047,900 - 48,180,702
singlet/doubletdoublet
Overlap geneFbxo34, D14Ertd436e
Upstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895
Downstream geneEG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216O02.bB6Ng01-216O02.g
ACCGA033453GA033454
length1,128839
definitionB6Ng01-216O02.b B6Ng01-216O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,047,900 - 48,049,015)(48,179,862 - 48,180,702)
sequence
ccccactggttgggcaaggcagtaagtccttttaaaaggttgggctgcag
agtaaacccttgttgaaaagaacaaatcggaacaaactataaagctatgt
tctcagtggtctattgctttgcttgtcagccatgtccttcatcctgcaag
tctaagcagacccggaatcccctctccagtaccctcacctttcacataag
cagaattcttgtctgcttccaagggaacagacagatattacagcctataa
cctcttcccctggggttgaaataagttataacaatggtatctaatcgtac
attgctggctgagctagaacaagttggatggacaggcccctttgtccttt
attagcaacattaatgaggaaactgttttagtgtgtggacagcttctcac
gggaaccttcgtgaaatcctaccaaatccttgcagaccctgatgtgactg
gttcaaagacaactgttgacagtttgtttattcagccttttgttatttct
tgtctccttttaccttgaagaactaaggaatatattgaagccttcggtgc
acacgaggaaagtttcggggagataaatgatctccaacaactcacacaca
gcaactgcaaaagggtggcttccttgatgacgtgggtctcagtctgtggg
tctcaaccctgtggggtcgaataaccctttcacaggggttgcttaatacc
atcagaagtaacacatatttacattataattcataacagaggcaaaatta
cagttatgaagtagtaatgaaattattttatggttgggggtcaccatgac
acaatgaactgtattagaggtcacagcactgggaaagttgagaactaccg
ctctagggaagcgagagtagagacgcataacatcaaaaaggtttataata
atgtttttattgaacttgtacccttccactctaaaatgcaaagctgctcg
actaggaaagatgagtcagcacggtccatgatgcattgccaccaagtctt
acggactagcctgagttcgatcttcagggagctcacttaggtggaacgag
acagctacttcatgattgctgtgtactggccatccatagcatgtgctgtg
ggacacaccacccgctccctaatcaaaa
gaattcaagcccagcctggtctgtataggtcagccagggatacagaatgt
ctcaaaaacaacaaaagtgcatgttagtattctgctatgtgtattttggg
aaacaggtacaggacagaatctacaagcactggagtgaggaaagagcttt
ccagctgacagcttggttagatacctggtggtgagcagagtgtgcaccct
cttgtgtttacttcccggattctaggtatttccctaggaatttgcggaag
tggtcagccgggggattggtggaatctcattaacctggggcaggggaagg
acatgcaaataaaccaaggtttggtttggttttgttttaaacaggtttat
tgacaagaaggaaagactaagccaacttaataacaagcaagaagaatttc
agaaagagtaagtctttaaagtcttttaatctgtataagtttgtctgttg
cttctgtgtgcatatttgcggattgccaccccatttagtagactatcttt
ttttgttgttgttgtttcgtgattgtttgttgttgtttttggtgtattga
gacaggatgtctctgtgtagccctggttgtcctgaaacgaactctataga
ccaagctggcctcgaactcataaatgcgcctgcctctgccacccaagtgc
tgggatgaaacgcgtgcgcccacatgcccggccagatccaatatatgttt
atttttgattccttgtcttttgagacagggggatctgtataacgctggct
gacctgagactcactctgagtaccaggctagtctcgaactcagaaatcga
cttgcctctgactcctcgagaatgggattaacatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48047900_48049015
seq2: B6Ng01-216O02.b_1_1128

seq1  CACCACTG--TGGGCAAGGCAGTAAGTCC-GAGGACAGCTTGGGCTGCAG  47
      | ||||||  |||||||||||||||||||     | || |||||||||||
seq2  CCCCACTGGTTGGGCAAGGCAGTAAGTCCTTTTAAAAGGTTGGGCTGCAG  50

seq1  AGTAAACCCTTGTTGAAAAGAACAAATCGGAACAAACTAGAAAGCTATGT  97
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTAAACCCTTGTTGAAAAGAACAAATCGGAACAAACTATAAAGCTATGT  100

seq1  TCTCAGTGGTCTATTGCTTTGCTTGTCAGCCATGTCCTTCATCCTGCAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGGTCTATTGCTTTGCTTGTCAGCCATGTCCTTCATCCTGCAAG  150

seq1  TCTAAGCAGACCCGGAATCCCCTCTCCAGTACCCTCACCTTTCACATAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAGACCCGGAATCCCCTCTCCAGTACCCTCACCTTTCACATAAG  200

seq1  CAGAATTCTTGTCTGCTTCCAAGGGAACAGACAGATATTACAGCCTATAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTTGTCTGCTTCCAAGGGAACAGACAGATATTACAGCCTATAA  250

seq1  CCTCTTCCCCTGGGGTTGAAATAAGTTATAACAATGGTATCTAATCGTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCCCTGGGGTTGAAATAAGTTATAACAATGGTATCTAATCGTAC  300

seq1  ATTGCTGGCTGAGCTAGAACAAGTTGGATGGACAGGCCCCTTTGTCCTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGGCTGAGCTAGAACAAGTTGGATGGACAGGCCCCTTTGTCCTTT  350

seq1  ATTAGCAACATTAATGAGGAAACTGTTTTAGTGTGTGGACAGCTTCTCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAACATTAATGAGGAAACTGTTTTAGTGTGTGGACAGCTTCTCAC  400

seq1  GGGAACCTTCGTGAAATCCTACCAAATCCTTGCAGACCCTGATGTGACTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTCGTGAAATCCTACCAAATCCTTGCAGACCCTGATGTGACTG  450

seq1  GTTCAAAGACAACTGTTGACAGTTTGTTTATTCAGCCTTTTGTTATTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGACAACTGTTGACAGTTTGTTTATTCAGCCTTTTGTTATTTCT  500

seq1  TGTCTCCTTTTACCTTGAAGAATAAAGGAAAATATTGAAGCCTTCGGTGC  547
      ||||||||||||||||||||||  |||||| |||||||||||||||||||
seq2  TGTCTCCTTTTACCTTGAAGAACTAAGGAATATATTGAAGCCTTCGGTGC  550

seq1  ACACGAGGAAAGTTTCGGGGAGATAAATGATCTCCAACAACTCACACACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGGAAAGTTTCGGGGAGATAAATGATCTCCAACAACTCACACACA  600

seq1  GCAGCTGCAAAAGGGTGGTTTCCTTTAGGCCGTGGGTCTCAATCTGTGGG  647
      ||| |||||||||||||| |||||| | | ||||||||||| ||||||||
seq2  GCAACTGCAAAAGGGTGGCTTCCTTGATGACGTGGGTCTCAGTCTGTGGG  650

seq1  TCTCAACCCTGTGGGGTCGAATAACCCTTTCACAGGGGTTGCTTAATACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCCTGTGGGGTCGAATAACCCTTTCACAGGGGTTGCTTAATACC  700

seq1  ATCAGAAGTAACAGATATTTACATTATAATTCATAACAGAGGCAAAATTA  747
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGTAACACATATTTACATTATAATTCATAACAGAGGCAAAATTA  750

seq1  CAGTTATGAAGTAGTAATGAAAATTATTTTATGGTTGGGGGTCACCATGA  797
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGTTATGAAGTAGTAATG-AAATTATTTTATGGTTGGGGGTCACCATGA  799

seq1  CACAAGGAACTGTATTAGAGGGTCACAGCACTGGGAAGGTTGAGAACTAC  847
      ||||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CACAATGAACTGTATTAGA-GGTCACAGCACTGGGAAAGTTGAGAACTAC  848

seq1  CGCTCTAGGGAGGCGAGAGTAGAGACGCATAAAATCAGAAAGGTTTATAA  897
      ||||||||||| |||||||||||||||||||| |||| ||||||||||||
seq2  CGCTCTAGGGAAGCGAGAGTAGAGACGCATAACATCAAAAAGGTTTATAA  898

seq1  GAAGGTTTTTATTGAACTTGTAACCCTCCACTCTAAAATGAAAAGCGGCT  947
       || |||||||||||||||||| || |||||||||||||| ||||| |||
seq2  TAATGTTTTTATTGAACTTGTACCCTTCCACTCTAAAATGCAAAGCTGCT  948

seq1  GGACT-GGAGAGATGAGTCAG-ACGGT-AAAGATGC-TTGCCACCAAGCC  993
       |||| ||| ||||||||||| |||||  | ||||| ||||||||||| |
seq2  CGACTAGGAAAGATGAGTCAGCACGGTCCATGATGCATTGCCACCAAGTC  998

seq1  TGACAGACTA-CCTGAGTTTGATCTCCA-GGAG-TCACTT-GGTGGAAGG  1039
      | || ||||| |||||||| ||||| || |||| |||||| ||||||| |
seq2  TTACGGACTAGCCTGAGTTCGATCTTCAGGGAGCTCACTTAGGTGGAACG  1048

seq1  AGAGAGCCAACTCATGAATGCTGTGTCCTGGCC-TCCATA-CATGTGCTG  1087
      ||| ||| |  |||||| |||||||| |||||| |||||| |||||||||
seq2  AGACAGCTACTTCATGATTGCTGTGTACTGGCCATCCATAGCATGTGCTG  1098

seq1  TGGGACACACACACAC-CCCCCTAATAAAA-  1116
      |||||||||| ||| | | ||||||| ||| 
seq2  TGGGACACAC-CACCCGCTCCCTAATCAAAA  1128

seq1: chr14_48179862_48180702
seq2: B6Ng01-216O02.g_65_903 (reverse)

seq1  CACACACCT-TTAATCCCAGCACTGGGGAGGCAGAGGCAGGCGGATTTCT  49
        ||||| | |||||||||     | |||| |||||||| |  |||||||
seq2  --CACACATGTTAATCCCATTCTCGAGGAGTCAGAGGCAAGTCGATTTCT  48

seq1  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGC  99
      ||||||||| | ||||||||   |||||||||| ||||| ||||||| | 
seq2  GAGTTCGAGACTAGCCTGGTACTCAGAGTGAGTCTCAGGTCAGCCAGCGT  98

seq1  TATACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAAACAAAAAAA  149
      ||||||||    ||||||||||||| ||||  || ||||||  || | | 
seq2  TATACAGA-TCCCCCTGTCTCAAAAGACAAGGAATCAAAAATAAACATAT  147

seq1  ATTCTATCTGGCCGGGCATGTTGGCGCACGCGTTTAATCCCAGCACTTGG  199
      |||  |||||||||||||||| ||||||||||||| ||||||||||||||
seq2  ATTGGATCTGGCCGGGCATGTGGGCGCACGCGTTTCATCCCAGCACTTGG  197

seq1  GAGGCAGAGGCAGGCGCATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  249
      | ||||||||||||||||||| |||||||||||||||| ||||||| |||
seq2  GTGGCAGAGGCAGGCGCATTTATGAGTTCGAGGCCAGCTTGGTCTATAGA  247

seq1  GTGAGTTCCAGGACAACCAGGGCTACACAGAGACACCCTGTCTCAAAAAA  299
      ||  ||| ||||||||||||||||||||||||||| |||||||||| | |
seq2  GTTCGTTTCAGGACAACCAGGGCTACACAGAGACATCCTGTCTCAATACA  297

seq1  CCAAAAACAAAAACAAACAAACAAGAAACAACAACAACAAAAAAAGATAG  349
      |||||||||| ||||||||| || ||||||||||||||||||||||||||
seq2  CCAAAAACAACAACAAACAATCACGAAACAACAACAACAAAAAAAGATAG  347

seq1  TCTACTAAATGGGGTGGCAATTCACAAATCTGCACACAGAAGCAACAGAC  399
      ||||||||||||||||||||| | ||||| ||||||||||||||||||||
seq2  TCTACTAAATGGGGTGGCAATCCGCAAATATGCACACAGAAGCAACAGAC  397

seq1  AAACTTCTACAGATTAAAAGACTTTAAAGACTTACTCTTTCTGAAATTCT  449
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATACAGATTAAAAGACTTTAAAGACTTACTCTTTCTGAAATTCT  447

seq1  TCTTGCTTGTTCTTAAGTTGGCTTAGTCTTTCCTTCTTGTCAATAAACCT  499
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGTTATTAAGTTGGCTTAGTCTTTCCTTCTTGTCAATAAACCT  497

seq1  GTTTAAAACAAAACCAAACCAAACCTTGGTTTATTTGCATGTCCTTCCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAACAAAACCAAACCAAACCTTGGTTTATTTGCATGTCCTTCCCC  547

seq1  TGCCCCAGGTTAATGAGATTCCACCAATCCCCCGGCTGACCACTTCTGCA  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCCCAGGTTAATGAGATTCCACCAATCCCCCGGCTGACCACTTCCGCA  597

seq1  AATTCCTAGGGAAATACCTAGAATCCGGGAAGTAAACACAAGAGGGTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGGGAAATACCTAGAATCCGGGAAGTAAACACAAGAGGGTGCA  647

seq1  CACTCTGCTCACCACCAGGTATCTAACCAAGCTGTCAGCTGGAAAGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTCACCACCAGGTATCTAACCAAGCTGTCAGCTGGAAAGCTCT  697

seq1  TTCCTCACTCCAGTGCTTGTAGATTCTGTCCTGTACCTGTTTCCCAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACTCCAGTGCTTGTAGATTCTGTCCTGTACCTGTTTCCCAAAAT  747

seq1  ACACATAGCAGAATACTAACATGAACTTTTGTTGTTTTTGAGACATTCTG  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACATAGCAGAATACTAACATGCACTTTTGTTGTTTTTGAGACATTCTG  797

seq1  TATCCCTGGCTGACCTATACAGACCAGGCTGGGCTTGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGGCTGACCTATACAGACCAGGCTGGGCTTGAATTC  839