BAC Information

Click to search

BAC

Clone NameB6Ng01-217A10
Chromosome14 (Build37)
Map Location 41,530,016 - 41,692,326
singlet/doubletdoublet
Overlap geneSh2d4b
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneTspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A10.bB6Ng01-217A10.g
ACCGA033557GA033558
length1,046622
definitionB6Ng01-217A10.b B6Ng01-217A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,530,016 - 41,531,053)(41,691,737 - 41,692,326)
sequence
gaattcaacataattgaaacaagaaggctttaaaatagcctgtatgggtt
ggggtccagtctcaacacaggatgggagttctcaactggaagcagggata
tctggaaggtgcataataaatatacacatactactttttgggggtacaag
ctgacaggcaatttttcaaggcttaaatttctctctcttctctctcattc
tccactctcttttctctcttgcttgctcgctcgctcgcagcttgaggctg
cacacactcttcattctcctgtgcactttgcttttcttgaactcgcacct
cataatacacacctctgtgtattcccctttcactgtcacacactcttcac
acacatgccacacacaccacatgcactctcctttcactcacacacacact
ctccatacacaccttacattctctcttcactcactcttcacacactcttc
tcatgatctcgtgcctttttcttgccccagtattttattgatactccaaa
agcagatttaaaaaaacaacataacattgtataatccttcccaaatcaaa
ttcaaaagaataacgacatcccacaaaaaaatcaagaattacaattgttc
cccaaagtttcaaacttccctattccctggacaatagccaaataataact
gcaaacttatcattatttaaactttgacttttgacttattatacttcaga
actcagagctttgaggtcagctactcgcattttcctatgaagctataatg
ataaatgacatgggcaaagctacctggcagtggccacaaagagtcaagtt
aacccttaactaagcaatttctatagctttctgcttctgcacattgcaca
aaatgactctcttaagagtcccagtgtttctggagagtccatcctttcat
cttagctccaaactttgtctctgtactcccttcatgggtattttgttccc
tattctaagaggaatgaaatatccacccgttggtcttccctcatctgatt
tcttgtgttttgcaaattgtaccttggggttttcttggtttcctgg
gaattccagtgcagccattgttacttctatagagagatcctgtctccaaa
accaaacacaataacaatgaacaaacaaacaaaacacttgcttgtggcta
gagagatgactcagtgctcgcagctctttctgaggaccagggtttggttt
ccagcatccgtatcatgccaatcacagccacctatatctcccagctacac
acaacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacatacacacacacacacacacacatacacacacacaca
cacatacacacacacatacacacacacacacatacacacacacacacaca
cacacatacacacacacacacacacacacacacacacacacacacacaca
cacacacacaccaaaataaaacagatgtaaaatcttgtggaaaaaaacct
ttagatcatttatttgaagtaattcagacttactttagaagaattgcaag
ctcggtgaatttctataacattcccacccaacatcccttaatggtcacat
ctttacacaatgaatggctttttaatataaaaatctcagtggccttattg
ggtttggtttagatttcatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41530016_41531053
seq2: B6Ng01-217A10.b_44_1078

seq1  GAATTCAACATAATTGAAACAAGAAGGCTTTAAAATAGCCTGTATGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATAATTGAAACAAGAAGGCTTTAAAATAGCCTGTATGGGTT  50

seq1  GGGGTCCAGTCTCAACACAGGATGGGAGTTCTCAACTGGAAGCAGGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCAGTCTCAACACAGGATGGGAGTTCTCAACTGGAAGCAGGGATA  100

seq1  TCTGGAAGGTGCATAATAAATATACACATACTACTTTTTGGGGGTACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGGTGCATAATAAATATACACATACTACTTTTTGGGGGTACAAG  150

seq1  CTGACAGGCAATTTTTCAAGGCTTAAATTTCTCTCTCTTCTCTCTCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGCAATTTTTCAAGGCTTAAATTTCTCTCTCTTCTCTCTCATTC  200

seq1  TCCACTCTCTTTTCTCTCTTGCTTGCTCGCTCGCTCGCAGCTTGAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTCTTTTCTCTCTTGCTTGCTCGCTCGCTCGCAGCTTGAGGCTG  250

seq1  CACACACTCTTCATTCTCCTGTGCACTTTGCTTTTCTTGAACTCGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCTTCATTCTCCTGTGCACTTTGCTTTTCTTGAACTCGCACCT  300

seq1  CATAATACACACCTCTGTGTATTCCCCTTTCACTGTCACACACTCTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACACACCTCTGTGTATTCCCCTTTCACTGTCACACACTCTTCAC  350

seq1  ACACATGCCACACACACCACATGCACTCTCCTTTCACTCACACACACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCCACACACACCACATGCACTCTCCTTTCACTCACACACACACT  400

seq1  CTCCATACACACCTTACATTCTCTCTTCACTCACTCTTCACACACTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATACACACCTTACATTCTCTCTTCACTCACTCTTCACACACTCTTC  450

seq1  TCATGATCTCGTGCCTTTTTCTTGCCCCAGTATTTTATTGATACTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTCGTGCCTTTTTCTTGCCCCAGTATTTTATTGATACTCCAAA  500

seq1  AGCAGATTTAAAAAAACAACATAACATTGTATAATCCTTCCCAAATCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTTAAAAAAACAACATAACATTGTATAATCCTTCCCAAATCAAA  550

seq1  TTCAAAAGAATAACGACATCCCACAAAAAAATCAAGAATTACAATTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAATAACGACATCCCACAAAAAAATCAAGAATTACAATTGTTC  600

seq1  CCCAAAGTTTCAAACTTCCCTATTCCCTGGACAATAGCCAAATAATAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTTTCAAACTTCCCTATTCCCTGGACAATAGCCAAATAATAACT  650

seq1  GCAAACTTATCATTATTTAAACTTTGACTTTTGACTTATTATACTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTATCATTATTTAAACTTTGACTTTTGACTTATTATACTTCAGA  700

seq1  ACTCAGAGCTTTGAGGTCAGCTACTCGCATTTTCCTATGAAGCTATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGCTTTGAGGTCAGCTACTCGCATTTTCCTATGAAGCTATAATG  750

seq1  ATAAATGACATGGGCAAAGCTACCTGGCAGTGGCCACAAAGAGTCAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGACATGGGCAAAGCTACCTGGCAGTGGCCACAAAGAGTCAAGTT  800

seq1  AACCCTTAACTAAGCAATTTCTATAGCTTTCTGCTTCTGCACATTGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTAACTAAGCAATTTCTATAGCTTTCTGCTTCTGCACATTGCACA  850

seq1  AAATGACTCTCTTAAGAGTCCCAGTGTTTCTGGAGAGTCCATCCTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTCTCTTAAGAGTCCCAGTGTTTCTGGAGAGTCCATCCTTTCAT  900

seq1  CTTAGCTCCAAACTTTGTCTCTGTAACTCCCTTCATGGGTATTTTGTTCC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTAGCTCCAAACTTTGTCTCTGT-ACTCCCTTCATGGGTATTTTGTTCC  949

seq1  CTATTCTAAGGAGGAATGAAATATCCACCCGTTGGTCTTCCCTCATCTTG  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CTATTCTAA-GAGGAATGAAATATCCACCCGTTGGTCTTCCCTCATC-TG  997

seq1  ATTTTCTTGTGTTTTGCAAATTGTACCTT-GGGTTTTCT  1038
      | ||||||||||||||||||||||||||| |||||||||
seq2  A-TTTCTTGTGTTTTGCAAATTGTACCTTGGGGTTTTCT  1035

seq1: chr14_41691737_41692326
seq2: B6Ng01-217A10.g_70_660 (reverse)

seq1  CACTGAGATTTTTATATT-AAAAGCCATTCATTGTGTAAAGATGTTACCA  49
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CACTGAGATTTTTATATTAAAAAGCCATTCATTGTGTAAAGATGTGACCA  50

seq1  TTAAGGGATGTTGGGTGGGAATGTTATAGAAATTCACCGAGCTTGCAATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGATGTTGGGTGGGAATGTTATAGAAATTCACCGAGCTTGCAATT  100

seq1  CTTCTAAAGTAAGTCTGAATTACTTCAAATAAATGATCTAAAGGTTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAGTAAGTCTGAATTACTTCAAATAAATGATCTAAAGGTTTTTT  150

seq1  TCCACAAGATTTTACCTCTGTTTTATTTTGGTGTGTGTGTGTGTGTGTGT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCACAAGATTTTACATCTGTTTTATTTTGGTGTGTGTGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGT  250

seq1  GTGTGTGTATGTGTGTGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGTGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTGT  300

seq1  GTGTATGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTAGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTAGCTG  400

seq1  GGAGATATAGGTGGCTGTGATTGGCATGATACGGATGCTGGAAACCAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATAGGTGGCTGTGATTGGCATGATACGGATGCTGGAAACCAAAC  450

seq1  CCTGGTCCTCAGAAAGAGCTGCGAGCACTGAGTCATCTCTCTAGCCACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTCAGAAAGAGCTGCGAGCACTGAGTCATCTCTCTAGCCACAA  500

seq1  GCAAGTGTTTTGTTTGTTTGTTCATTGTTATTGTGTTTGGTTTTGGAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTTTTGTTTGTTTGTTCATTGTTATTGTGTTTGGTTTTGGAGAC  550

seq1  AGGATCTCTCTATAGAAGTAACAATGGCTGCACTGGAATTC  590
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTCTCTATAGAAGTAACAATGGCTGCACTGGAATTC  591