BAC Information

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BAC

Clone NameB6Ng01-217D08
Chromosome14 (Build37)
Map Location 111,720,506 - 111,854,035
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217D08.bB6Ng01-217D08.g
ACCGA033682GA033683
length971958
definitionB6Ng01-217D08.b B6Ng01-217D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,853,064 - 111,854,035)(111,720,506 - 111,721,470)
sequence
gaattcaactgagctgaactgtactcaactgaactgcaaggaactgaagt
gaactctcccttcgctgctcttaggtaccctctcattcctgactaacggt
catattttatttctgacacatactgtcacatctctttcttattcatcact
tcttcttccccttctacaagctaaacttaccttcattgcttaggatccta
agcaatgtgtcctaaggctatgtctgtagtctactaactaaatttaccta
cattgctttgtgtcctaatacagacatctgcattccatccagaatggtta
aaggtgtattctaagggcatatcttaattccagccagaaggattaaaggt
cggtcatccagcctgatcccacagacccagaaggcttttgtgtgtgatcc
cttgccagagcaaccatgttgctggattaacattcctccacctgattcat
caaggtttttttttttttttttttttggattttcatttctttttgcactg
aaaatactgccaagtctatgctgaaaccttggcatcttcagaggtagttt
tgtgcatgtatgtacagttttgtacatattggtttctaaactcttcaata
tttaacatcacatttttgctttaattatagaaaataatctcattttttgc
ccttaacacaacccactttgtatcacaaacagaataacttttctaaataa
cataagttttttagtcacctcaaaatgactttgataaacacccactattt
ttcaaccatcactaatttcaaaattgatatagatttgttcagaaaggctt
tatacatgttaaaacaagaaagcatgatcttgagtgaaaggtaatttcct
tactttagataaaccactgagttcccaatagtcacatggattatctcttc
aagagcgcttcccaactgagaaggaaatgagtctctgatgagaggatgtg
gggtgatggacggtgggaaga
gaattcactttaattacaaagtcctagaaggtgacttacaatattatctt
ctgctgctttatatctacattggaaggttgttgttagggtagtcagctgt
atcagtttctcccttagcacctgattcacaacaaactcttaggttatgga
gacatttacgcctttctatcaaagtttattaactcatttctctgcaactt
aagctttttgagccttccttaacttttaaatgattcatagaataaagagc
ctttaaaagtaacacattgacaaattgttctctaaagaggacagactttc
ggtttaaatatatgtttccataaagtctaattattcctagtatattttat
tcaaaatgagaataaatagctatttaggttgtaaaatttgatattattat
agaataatttataatactttcttttcttatagaataagaaactctaagga
taagagtgtggataggaaaacagatgaacacacacaaataggtatctctt
tggttcactatttaatgggtttttgtttcagaatgaatcaaatatcacta
aatccagattaccttagttctacaactgtgaatgggcatcatgatcatct
tatttttctatgtatctgtctttattttctctttttctttatgtttaaca
tacaactaagtatatatcaaaagacaaagtaggataatttaaggatatca
caatgaagaggtttagaatagctactgttatcttccacagtagagaaagt
aagatacttgccactaatactgtaatgaaatatgctcaacaacatgtaag
ggttccgaatacaccaggagtagaggagagaaaataaatccatgtccttc
tggatcgacaggtagcttatctgtaacatgaaaaacattcactatcaatt
ccaccccataagagtgacccacctgctaaggttataggaggctactgtag
aacagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111853064_111854035
seq2: B6Ng01-217D08.b_43_1013 (reverse)

seq1  TCTTCCCACCGTCCATCACCCCACATTCTCTCATCAAAGACTCATTTCCT  50
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TCTTCCCACCGTCCATCACCCCACATCCTCTCATCAGAGACTCATTTCCT  50

seq1  TCCCAATTTGGAAGCACTCTTGAAGAAGATAATCCATGTGACTATTGGGA  100
      || || || |||||| ||||||||| ||||||||||||||||||||||||
seq2  TCTCAGTTGGGAAGCGCTCTTGAAG-AGATAATCCATGTGACTATTGGGA  99

seq1  ACTCAGTGGTTTATCTAAAGTAACGAAATTACC-TTCACACAAGATCATG  149
      ||||||||||||||||||||||| ||||||||| ||||| ||||||||||
seq2  ACTCAGTGGTTTATCTAAAGTAAGGAAATTACCTTTCACTCAAGATCATG  149

seq1  CTTTCTTGTTTTAACATGTATAAAGCCTTTCTGAACAAATCTATATCAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTCTTGTTTTAACATGTATAAAGCCTTTCTGAACAAATCTATATCAA-  198

seq1  TTTTGAAATTAGTGATGGTTGAAAAATAGTGGGTGTTTATCAAAGTCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATTAGTGATGGTTGAAAAATAGTGGGTGTTTATCAAAGTCATT  248

seq1  TTGAGGTGACTAAAAAACTTATGTTATTTAGAAAAGTTATTCTGTTTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGACTAAAAAACTTATGTTATTTAGAAAAGTTATTCTGTTTGTG  298

seq1  ATACAAAGTGGGTTGTGTTAAGGGCAAAAAATGAGACTATTTTCTATAAT  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATACAAAGTGGGTTGTGTTAAGGGCAAAAAATGAGATTATTTTCTATAAT  348

seq1  TAAAGCAAAAATGTGATGTTAAATATTGAAGAGTTTAGAAACCAATATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAAATGTGATGTTAAATATTGAAGAGTTTAGAAACCAATATGT  398

seq1  ACAAAACTGTACATACATGCACAAAACTACCTCTGAAGATGCCAAGGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGTACATACATGCACAAAACTACCTCTGAAGATGCCAAGGTTT  448

seq1  CAGCATAGACTTGGCAGTATTTTCAGTGCAAAAAGAAATGAAAATACAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCATAGACTTGGCAGTATTTTCAGTGCAAAAAGAAATGAAAATCCAAA  498

seq1  AAAAAAAAAAAAAAAAAACCTTGATGAATCAGGTGGAGGAATGTTAATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAACCTTGATGAATCAGGTGGAGGAATGTTAATCC  548

seq1  AGCAACATGGTTGCTCTGGCAAGGGATCACACACAAAAGCCTTCTGGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGGTTGCTCTGGCAAGGGATCACACACAAAAGCCTTCTGGGTC  598

seq1  TGTGGGATCAGGCTGGATGACCGACCTTTAATCCTTCTGGCTGGAATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATCAGGCTGGATGACCGACCTTTAATCCTTCTGGCTGGAATTAA  648

seq1  GATATGCCCTTAGAATACACCTTTAACCATTCTGGATGGAATGCAGATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCCTTAGAATACACCTTTAACCATTCTGGATGGAATGCAGATGT  698

seq1  CTGTATTAGGACACAAAGCAATGTAGGTAAATTTAGTTAGTAGACTACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTAGGACACAAAGCAATGTAGGTAAATTTAGTTAGTAGACTACAG  748

seq1  ACATAGCCTTAGGACACATTGCTTAGGATCCTAAGCAATGAAGGTAAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCTTAGGACACATTGCTTAGGATCCTAAGCAATGAAGGTAAGTT  798

seq1  TAGCTTGTAGAAGGGGAAGAAGAAGTGATGAATAAGAAAGAGATGTGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTAGAAGGGGAAGAAGAAGTGATGAATAAGAAAGAGATGTGACA  848

seq1  GTATGTGTCAGAAATAAAATATGACCGTTAGTCAGGAATGAGAGGGTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTCAGAAATAAAATATGACCGTTAGTCAGGAATGAGAGGGTACC  898

seq1  TAAGAGCAGCGAAGGGAGAGTTCACTTCAGTTCCTTGCAGTTCAGTTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAGCGAAGGGAGAGTTCACTTCAGTTCCTTGCAGTTCAGTTGAG  948

seq1  TACAGTTCAGCTCAGTTGAATTC  972
      |||||||||||||||||||||||
seq2  TACAGTTCAGCTCAGTTGAATTC  971

seq1: chr14_111720506_111721470
seq2: B6Ng01-217D08.g_65_1022

seq1  GAATTCACTTTAATTACAAAGTCCTAGAAGGTGACTTACAATATTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTAATTACAAAGTCCTAGAAGGTGACTTACAATATTATCTT  50

seq1  CTGCTGCTTTATATCTACATTGGAAGGTTGTTGTTAGGGTAGTCAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTTATATCTACATTGGAAGGTTGTTGTTAGGGTAGTCAGCTGT  100

seq1  ATCAGTTTCTCCCTTAGCACCTGATTCACAACAAACTCTTAGGTTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTCTCCCTTAGCACCTGATTCACAACAAACTCTTAGGTTATGGA  150

seq1  GACATTTACGCCTTTCTATCAAAGTTTATTAACTCATTTCTCTGCAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTACGCCTTTCTATCAAAGTTTATTAACTCATTTCTCTGCAACTT  200

seq1  AAGCTTTTTGAGCCTTCCTTAACTTTTAAATGATTCATAGAATAAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTGAGCCTTCCTTAACTTTTAAATGATTCATAGAATAAAGAGC  250

seq1  CTTTAAAAGTAACACATTGACAAATTGTTCTCTAAAGAGGACAGACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGTAACACATTGACAAATTGTTCTCTAAAGAGGACAGACTTTC  300

seq1  GGTTTAAATATATGTTTCCATAAAGTCTAATTATTCCTAGTATATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAATATATGTTTCCATAAAGTCTAATTATTCCTAGTATATTTTAT  350

seq1  TCAAAATGAGAATAAATAGCTATTTAGGTTGTAAAATTTGATATTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGAGAATAAATAGCTATTTAGGTTGTAAAATTTGATATTATTAT  400

seq1  AGAATAATTTATAATACTTTCTTTTCTTATAGAATAAGAAACTCTAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTTATAATACTTTCTTTTCTTATAGAATAAGAAACTCTAAGGA  450

seq1  TAAGAGTGTGGATAGGAAAACAGATGAACACACACAAATAGGTATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGTGGATAGGAAAACAGATGAACACACACAAATAGGTATCTCTT  500

seq1  TGGTTCACTATTTAATGGGTTTTTGTTTCAGAATGAATCAAATATCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACTATTTAATGGGTTTTTGTTTCAGAATGAATCAAATATCACTA  550

seq1  AATCCAGATTACCTTAGTTCTACAACTGTGAATGGGCATCATGATCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGATTACCTTAGTTCTACAACTGTGAATGGGCATCATGATCATCT  600

seq1  TATTTTTCTATGTATCTGTCTTTATTTTCTCTTTTTCTTTATGTTTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTATGTATCTGTCTTTATTTTCTCTTTTTCTTTATGTTTAACA  650

seq1  TACAACTAAGTATATATCAAAAGACAAAGTAGGATAATTTAAGGAATATC  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACAACTAAGTATATATCAAAAGACAAAGTAGGATAATTTAAGG-ATATC  699

seq1  ACAATGAAGAGGTTTAGAATAGCTACTGTAATCTTCCACAGTAGAGAAAA  750
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  ACAATGAAGAGGTTTAGAATAGCTACTGTTATCTTCCACAGTAGAG-AAA  748

seq1  GTAAGATACTTGCCACT-ATACTGTAATGAAATATGCTCAACAACATGT-  798
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GTAAGATACTTGCCACTAATACTGTAATGAAATATGCTCAACAACATGTA  798

seq1  AGGGTTTCAGATACACAGGGAGTAGAAGGAGAGAAAATAAATCCATGTCC  848
      |||||| |  ||||||  ||||||| ||||||||||||||||||||||||
seq2  AGGGTTCCGAATACACCAGGAGTAG-AGGAGAGAAAATAAATCCATGTCC  847

seq1  TTCTGGATCGACAGGTAGCTTATCTGTTAACATGAAAGACAAATTCACTT  898
      |||||||||||||||||||||||||| |||||||||| ||  |||||| |
seq2  TTCTGGATCGACAGGTAGCTTATCTG-TAACATGAAAAAC--ATTCAC-T  893

seq1  ATCAATTCCACCCCATAAGAGTGA-CCACCTGCTAAGGTGTTTATAGTA-  946
      |||||||||||||||||||||||| |||||||||||||   |||||| | 
seq2  ATCAATTCCACCCCATAAGAGTGACCCACCTGCTAAGG---TTATAGGAG  940

seq1  GCTATCTGTAGAACAGCAA  965
      |||| ||||||||||||||
seq2  GCTA-CTGTAGAACAGCAA  958