BAC Information

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BAC

Clone NameB6Ng01-217O18
Chromosome14 (Build37)
Map Location 21,709,370 - 21,824,147
singlet/doubletdoublet
Overlap geneVcl
Upstream geneGng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
Downstream geneAp3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217O18.bB6Ng01-217O18.g
ACCGA034187GA034188
length1,1611,105
definitionB6Ng01-217O18.b B6Ng01-217O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,709,370 - 21,710,520)(21,823,053 - 21,824,147)
sequence
gaattcttgcaaattgtaatggcctgtatcttcaaaatttctcccatcat
cagcatccaagagaaaggaaaaattctaaatacagtgaggtttttaagtg
gccatcttgggatagcaatagaagcatcctttttgttctccattgtgaag
cgccacactgcattgaagcaggtggttattttgtgtcgatactgtctgga
atggggaaagaactcacagtaatcagtattgacatgagagctgagcctat
gaagcacacaagaacttgcccccgacaatattcctggagaggatttaccg
agtgcctactgtgcttgaaagacacatccagcaagacacttaagacactt
gtaaggccagctgagccggtctcaactaagtgcagttccctcagatataa
agtttaccatataaaaaacttgcaaataaataaagcatcacatacaaaaa
ttaaccagacccaaagtcaaaacaacgtaatggacctacactcagagctg
acatttgagctgccggagggggtatgcctttaatcccagcactccggagg
cagaggagttaaagactagcctggtacacagccagggctaccatagtaag
accatgtctgtctccaaataacacagaataaaataatgaagtagaaaaag
agagagaactgacattcaaaatggaaggtctgtagcttcacattaaaatt
tatattttctgtatttaatatattttatgcagttgtccactgccaacacc
aaaaaaaatccgcaacggaactataactagaaaagcagtcatcgttaaca
tgagaaacacaatactagtggtcagcttggagttgtgggtgggattgtca
tgtctgtcttgtactcttccaggtagcaaatgtaacgaagtgtgagttcc
cttcaaatctcagcttttgcttctgctctcctatgtgcctggggcagtga
ccgcaccttttttatggacctttgctttcctcaactataaatgaggtttg
ttgtgatagcataccctacttcatcacaaggatgctgtaaagtttgaaac
ggagcgatgtgtattaagttactttaagacagtgtgtcatatgcaagaaa
cggctcaaaagctagctgtttgtacaggtctatctaataaaggtgctctt
ttttatttatt
gaattcacagtctctgtctttttgctttctgagccagcaatgccctcgtc
agaagattctaatgaatctcttactttgggaggataaaaataggcatttt
tctcacagacaaacagaaatagaacatataagttaagtggaagaaatgga
atattcccagatgtttgactttggttatccttggaaaatagtgctgcagg
actgtggtagaaaagagccacttctttcccatcaatccctctgtaacttt
gctgagggcaggttgagaagttctggcaaggggagtgcagccactatact
acacccctgaccaacattggccctcctctagctctcagaaggctatcctc
atgaacaaaggaactattctggagagataaacatggagcagtgaaggatg
gcaagggcaccaacctcagacaccagatgggccagccagaccaccctcct
cacatcctactgtagcctcctcacatcctactgtagcctcctcacatcct
actgtagcctcctcacatcctactgtagcctcctcacatcctactgtagc
ctcctcacatcctactgtagcctcctcacatcctactgtagcctcctcac
atcctactgtagcctcctcacatcctattgtagcctcctcaattcctact
gtagaacgttctaggaaatggtgctttggtttgctttggtttgctttggc
ttggtttcttcaaacagggtctcatatcaaattcatgatggaaccagagg
agaacttgaatttctgatcttgtctctacttcccagtttccgggatatag
atatcttcctccatgcctttatttttagggaaatgctggtgaccaaaccc
agccctacacaagaactctaccgattaagctgtatccccaggcccatggt
gctgttgttgatgtgatttttaaagagaagcaatattattttgttcagac
aaagggaataactcttttttcttatataattcaaagtagtgcgattgaag
ctttagagaggaaagctgttggcaggattgtttattacagggacaatcat
ccaggaaatgttattttagatcctttatgttattgctactcaaggaatag
cactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21709370_21710520
seq2: B6Ng01-217O18.b_45_1205

seq1  GAATTCTTGCAAATTGTAATGGCCTGTATCTTCAAAATTTCTCCCATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAAATTGTAATGGCCTGTATCTTCAAAATTTCTCCCATCAT  50

seq1  CAGCATCCAAGAGAAAGGAAAAATTCTAAATACAGTGAGGTTTTTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAAGAGAAAGGAAAAATTCTAAATACAGTGAGGTTTTTAAGTG  100

seq1  GCCATCTTGGGATAGCAATAGAAGCATCCTTTTTGTTCTCCATTGTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTGGGATAGCAATAGAAGCATCCTTTTTGTTCTCCATTGTGAAG  150

seq1  CGCCACACTGCATTGAAGCAGGTGGTTATTTTGTGTCGATACTGTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACACTGCATTGAAGCAGGTGGTTATTTTGTGTCGATACTGTCTGGA  200

seq1  ATGGGGAAAGAACTCACAGTAATCAGTATTGACATGAGAGCTGAGCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAAGAACTCACAGTAATCAGTATTGACATGAGAGCTGAGCCTAT  250

seq1  GAAGCACACAAGAACTTGCCCCCGACAATATTCCTGGAGAGGATTTACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACACAAGAACTTGCCCCCGACAATATTCCTGGAGAGGATTTACCG  300

seq1  AGTGCCTACTGTGCTTGAAAGACACATCCAGCAAGACACTTAAGACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTACTGTGCTTGAAAGACACATCCAGCAAGACACTTAAGACACTT  350

seq1  GTAAGGCCAGCTGAGCCGGTCTCAACTAAGTGCAGTTCCCTCAGATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCCAGCTGAGCCGGTCTCAACTAAGTGCAGTTCCCTCAGATATAA  400

seq1  AGTTTACCATATAAAAAACTTGCAAATAAATAAAGCATCACATACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACCATATAAAAAACTTGCAAATAAATAAAGCATCACATACAAAAA  450

seq1  TTAACCAGACCCAAAGTCAAAACAACGTAATGGACCTACACTCAGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGACCCAAAGTCAAAACAACGTAATGGACCTACACTCAGAGCTG  500

seq1  ACATTTGAGCTGCCGGAGGGGGTATGCCTTTAATCCCAGCACTCCGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAGCTGCCGGAGGGGGTATGCCTTTAATCCCAGCACTCCGGAGG  550

seq1  CAGAGGAGTTAAAGACTAGCCTGGTACACAGCCAGGGCTACCATAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTTAAAGACTAGCCTGGTACACAGCCAGGGCTACCATAGTAAG  600

seq1  ACCATGTCTGTCTCCAAATAACACAGAATAAAATAATGAAGTAGAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTGTCTCCAAATAACACAGAATAAAATAATGAAGTAGAAAAAG  650

seq1  AGAGAGAACTGACATTCAAAATGGAAGGTCTGTAGCTTCACATTAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACTGACATTCAAAATGGAAGGTCTGTAGCTTCACATTAAAATT  700

seq1  TATATTTTCTGTATTTAATATATTTTATGCAGTTGTCCACTGCCAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCTGTATTTAATATATTTTATGCAGTTGTCCACTGCCAACACC  750

seq1  AAAAAAAATCCGCAACGGAACTATAACTAGAAAAGCAGTCATCGTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCGCAACGGAACTATAACTAGAAAAGCAGTCATCGTTAACA  800

seq1  TGAGAAACACAATACTAGTGGTCAGCTTGGAGTTGTGGGTGGGATTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACACAATACTAGTGGTCAGCTTGGAGTTGTGGGTGGGATTGTCA  850

seq1  TGTCTGTCTTGTACTCTTCCAGGTAGCAAATGTAACGAAGTGTGAGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTTGTACTCTTCCAGGTAGCAAATGTAACGAAGTGTGAGTTCC  900

seq1  CTTCAAATCTCAGC-TTTGC-TCTGCTCTCCCTATGTGCCT-GGGCAGTG  947
      |||||||||||||| ||||| |||||||| ||||||||||| ||||||||
seq2  CTTCAAATCTCAGCTTTTGCTTCTGCTCT-CCTATGTGCCTGGGGCAGTG  949

seq1  ACCGCACC-TTTTTATGGA-CTTTGCTTTCCTCACCTATAAATGAGGTT-  994
      |||||||| |||||||||| |||||||||||||| |||||||||||||| 
seq2  ACCGCACCTTTTTTATGGACCTTTGCTTTCCTCAACTATAAATGAGGTTT  999

seq1  -GTGTGATAGCATA-CCTACTTCATCACAGGGATGCTGTAAAGTTTGAA-  1041
        |||||||||||| |||||||||||||| ||||||||||||||||||| 
seq2  GTTGTGATAGCATACCCTACTTCATCACAAGGATGCTGTAAAGTTTGAAA  1049

seq1  -CGAGCGGATGTGTATTAAG-TACTTTAGAACA--GTGTCATATGCAAAG  1087
        |||| ||||||||||||| |||||||  |||  ||||||||||| |||
seq2  CGGAGC-GATGTGTATTAAGTTACTTTAAGACAGTGTGTCATATGC-AAG  1097

seq1  AAACGCCTCAAAAGCTAGCTGTTGTTACAGTCCTATCT-ATATAGTTTGC  1136
      ||||| |||||||||||||||||  |||||  |||||| ||| ||  |||
seq2  AAACGGCTCAAAAGCTAGCTGTTTGTACAGGTCTATCTAATAAAG-GTGC  1146

seq1  TCTTTTTTATTTATT  1151
      |||||||||||||||
seq2  TCTTTTTTATTTATT  1161

seq1: chr14_21823053_21824147
seq2: B6Ng01-217O18.g_67_1171 (reverse)

seq1  CAGTGCTATTTCTTGAGTAGCAATTACATAAAGGATTCTTAAATTACATT  50
      |||||||||| ||||||||||||| |||||||||| ||| |||| |||||
seq2  CAGTGCTATTCCTTGAGTAGCAATAACATAAAGGA-TCTAAAATAACATT  49

seq1  TCCTGGATGATTGTTCCTGTAATAA--CATCCTTGCCACAGC-TTCCTCT  97
      |||||||||||||| ||||||||||   |||||  | ||||| |||||||
seq2  TCCTGGATGATTGTCCCTGTAATAAACAATCCTGCCAACAGCTTTCCTCT  99

seq1  CTTAAAGGCTTTCATCGCACCTACTTTG-ATTATAT---AGAAAAGAGTT  143
      ||  || ||||  |||||| |||||||| |||||||   | |||||||||
seq2  CT--AAAGCTTCAATCGCA-CTACTTTGAATTATATAAGAAAAAAGAGTT  146

seq1  ATTCCTTTGTTCTG-ACAAA--TATATTGC-TCTCTTTAAAAATCACATC  189
      ||||| ||  |||| |||||   ||||||| |||||||||||||||||||
seq2  ATTCCCTTTGTCTGAACAAAATAATATTGCTTCTCTTTAAAAATCACATC  196

seq1  AACAACAGCACCATGGG-CTGGGGATACAGCTTAATCGGTAGAGTTCTTG  238
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACAACAGCACCATGGGCCTGGGGATACAGCTTAATCGGTAGAGTTCTTG  246

seq1  TGTAGGGCTGGGTTTGGTCACCAGCATTT-CCTAAAA--TAAGGCATGGA  285
      ||||||||||||||||||||||||||||| |||||||   ||||||||||
seq2  TGTAGGGCTGGGTTTGGTCACCAGCATTTCCCTAAAAATAAAGGCATGGA  296

seq1  GGAAGATATCTATAATCCCGGAAACTGGGAAGTAGAGACAAGATCAGAAA  335
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAGATATCTAT-ATCCCGGAAACTGGGAAGTAGAGACAAGATCAGAAA  345

seq1  TTCAAGTTCTCCTCTGGTTCCATCATGAATTTGATATGAGACCCTGTTTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCTCCTCTGGTTCCATCATGAATTTGATATGAGACCCTGTTTG  395

seq1  AAGAAACCAAGCCAAAGCAAACCAAAGCAAACCAAAGCACCATTTCCTAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCAAGCCAAAGCAAACCAAAGCAAACCAAAGCACCATTTCCTAG  445

seq1  AACGTTCTACAGTAGGAATTGAGGAGGCTACAATAGGATGTGAGGAGGCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCTACAGTAGGAATTGAGGAGGCTACAATAGGATGTGAGGAGGCT  495

seq1  ACAGTAGGATGTGAGGAGGCTACAGTAGGATGTGAGGAGGCTACAGTAGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGATGTGAGGAGGCTACAGTAGGATGTGAGGAGGCTACAGTAGG  545

seq1  ATGTGAGGAGGCTACAGTAGGATGTGAGGAGGCTACAGTAGGATGTGAGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGAGGCTACAGTAGGATGTGAGGAGGCTACAGTAGGATGTGAGG  595

seq1  AGGCTACAGTAGGATGTGAGGAGGCTACAGTAGGATGTGAGGAGGCTACA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACAGTAGGATGTGAGGAGGCTACAGTAGGATGTGAGGAGGCTACA  645

seq1  GTAGGATGTGAGGAGGGTGGTCTGGCTGGCCCATCTGGTGTCTGAGGTTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGTGAGGAGGGTGGTCTGGCTGGCCCATCTGGTGTCTGAGGTTG  695

seq1  GTGCCCTTGCCATCCTTCACTGCTCCATGTTTATCTCTCCAGAATAGTTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTGCCATCCTTCACTGCTCCATGTTTATCTCTCCAGAATAGTTC  745

seq1  CTTTGTTCATGAGGATAGCCTTCTGAGAGCTAGAGGAGGGCCAATGTTGG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCATGAGGATAGCCTTCTGAGAGCTAGAGGAGGGCCAATGTTGG  795

seq1  TCAGGGGTGTAGTATAGTGGCTGCACTCCCCTTGCCAGAACTTCTCAACC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTGTAGTATAGTGGCTGCACTCCCCTTGCCAGAACTTCTCAACC  845

seq1  TGCCCTCAGCAAAGTTACAGAGGGATTGATGGGAAAGAAGTGGCTCTTTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGCAAAGTTACAGAGGGATTGATGGGAAAGAAGTGGCTCTTTT  895

seq1  CTACCACAGTCCTGCAGCACTATTTTCCAAGGATAACCAAAGTCAAACAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACAGTCCTGCAGCACTATTTTCCAAGGATAACCAAAGTCAAACAT  945

seq1  CTGGGAATATTCCATTTCTTCCACTTAACTTATATGTTCTATTTCTGTTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATATTCCATTTCTTCCACTTAACTTATATGTTCTATTTCTGTTT  995

seq1  GTCTGTGAGAAAAATGCCTATTTTTATCCTCCCAAAGTAAGAGATTCATT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAGAAAAATGCCTATTTTTATCCTCCCAAAGTAAGAGATTCATT  1045

seq1  AGAATCTTCTGACGAGGGCATTGCTGGCTCAGAAAGCAAAAAGACAGAGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCTGACGAGGGCATTGCTGGCTCAGAAAGCAAAAAGACAGAGA  1095

seq1  CTGTGAATTC  1095
      ||||||||||
seq2  CTGTGAATTC  1105