BAC Information

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BAC

Clone NameB6Ng01-218E17
Chromosome14 (Build37)15 (Build37)
Map Location 121,227,928 - 121,227,98942,519,161 - 42,520,176
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHs6st3, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
Downstream geneRanbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218E17.bB6Ng01-218E17.g
ACCGA034461GA034462
length1,0321,040
definitionB6Ng01-218E17.b B6Ng01-218E17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,227,928 - 121,227,989)(42,519,161 - 42,520,176)
sequence
gaattctcaaccaaggaatcttgaatggccaagaagcacttaaagaaata
ttcgggctgcagagatggctcagtgggagctggagagatggttcagtggt
taagagcactaactgctcttccagaggtcctgagttcaattcccagcaac
cacatggtggctcacaaccatctgtaatgggatctgatgccctcttctgc
agtgtctgaagatagcaacagtatactcatatacataaaataattaaaca
aatagtttaaaaaaaagaaattttcacactttggtcatccttcttgagct
tcatgtggtctgtgaattgtattctggttatttggagcattggggctagt
atccacttatcagtgagtgcataccatgtgttttcttttgcgattgtgtt
acctcactcaggatgatatttcctagttataaccatttgcctaagaattt
cgtgaattcatcatttttaatggctgagtagtactctattgtgtaaatgt
accacattttctgtatccattcctctgttgaaagacatctgggttctttc
cagcttctggctattataaataaggctgcaatgaacatagtggaacatgt
gtccttattacatgttggagcatcttctggcacatgaagctcaagaagaa
ggaagatcaaagtgtggatactttggtccttcttagaaggagaacaacgt
tctcacaggagcaaatatggagataaagtgtagagcagagactaaaggaa
aggttacccagagacagtcctacctggggattcatcccatatacagttac
caaacccagacactattgtggatgtcaagcacatgctgaaaggagcctga
tatggctgtttcctgagagtccctgccagagccttacaaatacagaggta
gatgtttgtagccaaccattggactgagcacagagcccctaatagaggag
ttagagaaggattgaaggagttgaagcagtttgcaactccaaaggaggac
catatatcaaacaaccagacccccagaactcc
gaattccaggaaacaaggtaccactgaactgccagtccatggattttaat
agaagttacaaaagagaatgtggtgagggagaaagagatactgagtcagt
ccagttggaatcccaggagatgtccaggtgcttctccatttgtttcatat
gatcacacataggttccagggaaagatgttcaattaaaaaaaagaaacaa
aaatggaccagaaaccagaaatcctgctggcattcttggcttccaggatt
gcagcagaacaatgttttagctaaatgaaaatttagccaagctttattga
cacaacacagactttaagcaaaaggagaaagtaagagagtattagcacta
ctttaagaatgaagcagggaaacaatgcgacatatattgcggtgatggtg
gtggttctggaatgccataatggccttagtgacttagtgactaggcatta
agtgtctaaaggaatgactctgcaaggtagaactccatgaaaaagcacag
aatgatccttaaagcactaaatatattaccttagatagcaaaggaacgtt
ttggatatgcctaaaatgttcagtcttaaaatgtggagaattttcattgg
agagcattgtagcctgtggttcattagagtcaatacgcttctccagcgag
gaccagagggaggtatatagaagagaggtcagacagatgcagttttatac
tttgaaggtagaggaaagttcccacaagccaatgtatgtgggtggccgtc
agagttggataaacaaggaaatggattcttccctagatcctctaggataa
aaaagaagaaggaaaaaagaaaagaaaagaaaagaaaaaacacagccttc
ccaacaccttaacttctgccctgtgagatcagagattgacttttgaccta
caaaactgtaagataataatctgtgtttccttaaccactaagttcatggc
atttgttacatagcactgaagactaacacagagagactctacttcttcaa
gggcagtgagcagtcatgaatctggagaataagaaatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_121227928_121227989
seq2: B6Ng01-218E17.b_101_147

seq1  GGGCTGCAGAGATGGCTCAGTGGTCAGGGAGGGCACTGTCTGTGGAGAGA  50
      |||||||||||||||||||||     |||||           ||||||||
seq2  GGGCTGCAGAGATGGCTCAGT-----GGGAG----------CTGGAGAGA  35

seq1  TGGCTCAGTGGT  62
      ||| ||||||||
seq2  TGGTTCAGTGGT  47

seq1: chr15_42519161_42520176
seq2: B6Ng01-218E17.g_62_1068

seq1  GAATTCCAGGAAACAAGGTACCACTGAACTGCCAGTCCATGGATTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAACAAGGTACCACTGAACTGCCAGTCCATGGATTTTAAT  50

seq1  AGAAGTTACAAAAGAGAATGTGGTGAGGGAGAAAGAGATACTGAGTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTACAAAAGAGAATGTGGTGAGGGAGAAAGAGATACTGAGTCAGT  100

seq1  CCAGTTGGAATCCCAGGAGATGTCCAGGTGCTTCTCCATTTGTTTCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGAATCCCAGGAGATGTCCAGGTGCTTCTCCATTTGTTTCATAT  150

seq1  GATCACACATAGGTTCCAGGGAAAGATGTTCAATTAAAAAAAAGAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACATAGGTTCCAGGGAAAGATGTTCAATTAAAAAAAAGAAACAA  200

seq1  AAATGGACCAGAAACCAGAAATCCTGCTGGCATTCTTGGCTTCCAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACCAGAAACCAGAAATCCTGCTGGCATTCTTGGCTTCCAGGATT  250

seq1  GCAGCAGAACAATGTTTTAGCTAAATGAAAATTTAGCCAAGCTTTATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAACAATGTTTTAGCTAAATGAAAATTTAGCCAAGCTTTATTGA  300

seq1  CACAACACAGACTTTAAGCAAAAGGAGAAAGTAAGAGAGTATTAGCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACAGACTTTAAGCAAAAGGAGAAAGTAAGAGAGTATTAGCACTA  350

seq1  CTTTAAGAATGAAGCAGGGAAACAATGCGACATATATTGCGGTGATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAATGAAGCAGGGAAACAATGCGACATATATTGCGGTGATGGTG  400

seq1  GTGGTTCTGGAATGCCATAATGGCCTTAGTGACTTAGTGACTAGGCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTGGAATGCCATAATGGCCTTAGTGACTTAGTGACTAGGCATTA  450

seq1  AGTGTCTAAAGGAATGACTCTGCAAGGTAGAACTCCATGAAAAAGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTAAAGGAATGACTCTGCAAGGTAGAACTCCATGAAAAAGCACAG  500

seq1  AATGATCCTTAAAGCACTAAATATATTACCTTAGATAGCAAAGGAACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCTTAAAGCACTAAATATATTACCTTAGATAGCAAAGGAACGTT  550

seq1  TTGGATATGCCTAAAATGTTCAGTCTTAAAATGTGGAGAATTTTCATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATGCCTAAAATGTTCAGTCTTAAAATGTGGAGAATTTTCATTGG  600

seq1  AGAGCATTGTAGCCTGTGGTTCATTAGAGTCAATACGCTTCTCCAGCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTGTAGCCTGTGGTTCATTAGAGTCAATACGCTTCTCCAGCGAG  650

seq1  GACCAGAGGGAGGTATATAGAAGAGAGGTCAGACAGATGCAGTTTTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGGGAGGTATATAGAAGAGAGGTCAGACAGATGCAGTTTTATAC  700

seq1  TTTGAAGGTAGAGGAAAGTTCCCACAAGCCAATGTATGTGGGTGGCCGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGTAGAGGAAAGTTCCCACAAGCCAATGTATGTGGGTGGCCGTC  750

seq1  AGAGTTGGATAAACAAGGAAATGGATTCTTCCCTAGATCCTCTAGGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGATAAACAAGGAAATGGATTCTTCCCTAGATCCTCTAGGATAA  800

seq1  AAAAGAAGAAGGAAAAAAGAAAAGAAAAGAAAAGAAAAAACACAGCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAGGAAAAAAGAAAAGAAAAGAAAAGAAAAAACACAGCCTTC  850

seq1  CCAACACCTTAACTTCTGCCCTGTGAGATCAGAGATTGACTTTTGACCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCTTAACTTCTGCCCTGTGAGATCAGAGATTGACTTTTGACCTA  900

seq1  CAAAACTGTAAGATAATAAATCTGTGTTTCCTTAACCACTAAGTTCATGG  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAAACTGTAAGATAAT-AATCTGTGTTTCCTTAACCACTAAGTTCATGG  949

seq1  CAATTTGTTACAATAGCAACTGAAGACTAACACAAGAGAGAACCTCTAAC  1000
      | ||||||||| ||||| ||||||||||||||| |||||||  |||| ||
seq2  C-ATTTGTTAC-ATAGC-ACTGAAGACTAACAC-AGAGAGA--CTCT-AC  992

seq1  TTCTTCAAAGGGCAGT  1016
      |||||| |||||||||
seq2  TTCTTC-AAGGGCAGT  1007