BAC Information

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BAC

Clone NameB6Ng01-220B12
Chromosome14 (Build37)
Map Location 80,787,911 - 80,925,689
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B12.bB6Ng01-220B12.g
ACCGA035740GA035741
length1,1691,164
definitionB6Ng01-220B12.b B6Ng01-220B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,787,911 - 80,789,077)(80,924,559 - 80,925,689)
sequence
gaattcctgtcctgacttccttcagagatggactatagtccagaaatgta
agctgatataaaagtttacctctctaagttgcacttggtcagagagtttt
attcaagcagtgaaaataaaaatagaataaatatcgtattagtgacgaag
agaaggaattcaaagggaaaaaaaggaactaggaagagtagtcacttact
tatccttaggaaatgatgactaactgtaatagttcaccttgggatatata
taagaaggcgtctatgtggctcacaatttaggagtgaaaagtccaagata
atgtggctccatgaacatactttggtgaaagcctccctggctatgcagaa
catggtgaagaaggacaagaaacacagctgactgaagaatgggctaagca
tgtggaccatctcgatttcctaacactctcatcttgagtaccaaccattt
gggagaccaatactagtgccttctcacgaccaggcctctgtgacttttcc
tttgtttctaccatcagcagtctcaccatcttgataccattatagccaca
acagaacttccaggaacatggaactaggcaaggccttctgatctgagaag
aatcagaattaggagaaaacccaggggaatattttgatggtgtttattat
tctaataacacatgaatgccaagggggtgagggaaggggaatttagccat
gatttctgaccattttgacttgagtaacaggagcagaaactagaaaagaa
atccattgtttctggtgtgctgaatttgaagtgcacaacgttttctagga
gaggtatcttatagttatccatcagtctttataaacagtgtgttagtttc
aagctgataatataaacaggcatgatagccctcatttgatggacaacatc
tgaaatttactgaggctagatggcttctcctttatttcagtcacagaggt
taagttgctcaaggccaatatttgttgttctacggattcaagatccaagg
atccaatggttgttgttactctcttacaacgtaaagctaagtagttccac
aagaatatttattcttctcaggacaattctctgttttcatcctgatcagg
actacacatgtatcaggatttcttaagcagctgccacaaagtgtaaatgt
ttggaataccttatgtcct

gaattcttacagaggtccaacttccatttccagaattcacaaacacctaa
caatttgagagcctcttctggcctctgcaggcaaagggtctcatctaatg
catacacggaggcaaaactaatgcacagcaaataaaaataaagaaaccat
taagaaactactgtgtagaaattcaacatttcctctttctgtcctgtcta
ggtgctccatcaattatgtgttagttgccataagtgaagaaaaatcttcc
ttccttggtctcccaattcaaatataaatctcttctggaaatactttcaa
agacatattcataaacaaggttttcaactatctagaatccctaaattcat
tcaactttacatctaaaaatttttgacatataaacaaacaaaacttaaag
aaattctaagcacaaggtaggtgttcaatagaaatgaatgaataaatata
caagtgaacaagggtgtgtgaaaattgcttctgtattagatgcatgaaaa
aatagagacgcatatgatttaactaattttgatattataattttatttga
atcttggtaaggtcagagtcttctgggttgccttgttgatcacatattca
tacataaactacataaaccaaacaaattacacctggatttggatagactt
gttacaggtaaaactaccattcaattcaacatatatttattggtcatcct
gtgagttccaagcactgtgttatgtgcaacatatttaagaggccaagttg
acttagaggtaagttcaaaggcttctttggcctgatgaactgacaatgct
tctcattatccccccacatagggaaatgtagatccctagcttaaatcact
acttcagctatgaaaacacttgggggtcttttaaatctataggctagtgg
gaccaagttttatgatctatcacatgaacaaccatattaatcactttcca
attcctaggaactcctttagaaatgactgctcttattttgttcaaaagaa
catctgaataatattctattaactccccacaatcaaatcttgtttctttc
attctaacccactggagaaaggtcatggggtgtggacttggtctattcat
caggtatctggacacatctaactcaataggccttggtaacagaaaggtcc
attttgaaaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80787911_80789077
seq2: B6Ng01-220B12.b_45_1213

seq1  GAATTCCTGTCCTGACTTCCTTCAGAGATGGACTATAGTCCAGAAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTGACTTCCTTCAGAGATGGACTATAGTCCAGAAATGTA  50

seq1  AGCTGATATAAAAGTTTACCTCTCTAAGTTGCACTTGGTCAGAGAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATAAAAGTTTACCTCTCTAAGTTGCACTTGGTCAGAGAGTTTT  100

seq1  ATTCAAGCAGTGAAAATAAAAATAGAATAAATATCGTATTAGTGACGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCAGTGAAAATAAAAATAGAATAAATATCGTATTAGTGACGAAG  150

seq1  AGAAGGAATTCAAAGGGAAAAAAAGGAACTAGGAAGAGTAGTCACTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATTCAAAGGGAAAAAAAGGAACTAGGAAGAGTAGTCACTTACT  200

seq1  TATCCTTAGGAAATGATGACTAACTGTAATAGTTCACCTTGGGATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAGGAAATGATGACTAACTGTAATAGTTCACCTTGGGATATATA  250

seq1  TAAGAAGGCGTCTATGTGGCTCACAATTTAGGAGTGAAAAGTCCAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCGTCTATGTGGCTCACAATTTAGGAGTGAAAAGTCCAAGATA  300

seq1  ATGTGGCTCCATGAACATACTTTGGTGAAAGCCTCCCTGGCTATGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTCCATGAACATACTTTGGTGAAAGCCTCCCTGGCTATGCAGAA  350

seq1  CATGGTGAAGAAGGACAAGAAACACAGCTGACTGAAGAATGGGCTAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAAGAAGGACAAGAAACACAGCTGACTGAAGAATGGGCTAAGCA  400

seq1  TGTGGACCATCTCGATTTCCTAACACTCTCATCTTGAGTACCAACCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCATCTCGATTTCCTAACACTCTCATCTTGAGTACCAACCATTT  450

seq1  GGGAGACCAATACTAGTGCCTTCTCACGACCAGGCCTCTGTGACTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCAATACTAGTGCCTTCTCACGACCAGGCCTCTGTGACTTTTCC  500

seq1  TTTGTTTCTACCATCAGCAGTCTCACCATCTTGATACCATTATAGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTACCATCAGCAGTCTCACCATCTTGATACCATTATAGCCACA  550

seq1  ACAGAACTTCCAGGAACATGGAACTAGGCAAGGCCTTCTGATCTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTCCAGGAACATGGAACTAGGCAAGGCCTTCTGATCTGAGAAG  600

seq1  AATCAGAATTAGGAGAAAACCCAGGGGAATATTTTGATGGTGTTTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAATTAGGAGAAAACCCAGGGGAATATTTTGATGGTGTTTATTAT  650

seq1  TCTAATAACACATGAATGCCAAGGGGGTGAGGGAAGGGGAATTTAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACACATGAATGCCAAGGGGGTGAGGGAAGGGGAATTTAGCCAT  700

seq1  GATTTCTGACCATTTTGACTTGAGTAACAGGAGCAGAAACTAGAAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGACCATTTTGACTTGAGTAACAGGAGCAGAAACTAGAAAAGAA  750

seq1  ATCCATTGTTTCTGGTGTGCTGAATTTGAAGTGCACAACGTTTTCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGTTTCTGGTGTGCTGAATTTGAAGTGCACAACGTTTTCTAGGA  800

seq1  GAGGTATCTTATAGTTATCCATCAGTCTTTATAAACAGTGTGTTAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATCTTATAGTTATCCATCAGTCTTTATAAACAGTGTGTTAGTTTC  850

seq1  AAGCTGATAATATAAACAGGCATGATAGCCCTCATTTGATGGACAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATAATATAAACAGGCATGATAGCCCTCATTTGATGGACAACATC  900

seq1  TGAAATTTACTGAGGCTAGATGGCTTCTCCTTTATTTCAGTCACAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTACTGAGGCTAGATGGCTTCTCCTTTATTTCAGTCACAGAGGT  950

seq1  TAAGTTGCTCAAGGCCAATATTTGTTGTTCTAC-GATTCAAAGATCCAAG  999
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TAAGTTGCTCAAGGCCAATATTTGTTGTTCTACGGATTC-AAGATCCAAG  999

seq1  GATCCAAATGGTTGTTGTTACTCTCTTACAAACGTAAAGCTAAAGTAGTT  1049
      ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GATCC-AATGGTTGTTGTTACTCTCTTAC-AACGTAAAGCT-AAGTAGTT  1046

seq1  -CAC-AGAATATTTAT--CTCTCAGGACAAATTCTCTGTTTTCATCCTGA  1095
       ||| |||||||||||   ||||||||| |||||||||||||||||||||
seq2  CCACAAGAATATTTATTCTTCTCAGGAC-AATTCTCTGTTTTCATCCTGA  1095

seq1  TCAGGACTACACATGTATCAG--ATTCTT-AGCAGCTGCC-CACAGTGTT  1141
      |||||||||||||||||||||   ||||| |||||||||| || ||||| 
seq2  TCAGGACTACACATGTATCAGGATTTCTTAAGCAGCTGCCACAAAGTGTA  1145

seq1  AATGTTTGAAATAACACTAATGTCCT  1167
      |||||||| ||||   || |||||||
seq2  AATGTTTGGAATA--CCTTATGTCCT  1169


seq1: chr14_80924559_80925689
seq2: B6Ng01-220B12.g_65_1228 (reverse)

seq1  GCCATTTTAAAAATGGGGACC-TTCTGTTACCAAG--CTA-TGAG-TAGA  45
      |||||||| |||||  ||||| |||||||||||||  ||| |||| ||||
seq2  GCCATTTTCAAAAT--GGACCTTTCTGTTACCAAGGCCTATTGAGTTAGA  48

seq1  TGTGT-CAGATA-CTGATGAATAGA-CAAGT---CACACCATGA-CTTTC  88
      ||||| |||||| |||||||||||| |||||   ||| |||||| |||||
seq2  TGTGTCCAGATACCTGATGAATAGACCAAGTCCACACCCCATGACCTTTC  98

seq1  T-CAGTGGG-TAGAATG-AAGAAAC-AGATTTGATTGT-GGGAGTTAATA  133
      | ||||||| ||||||| ||||||| |||||||||||| |||||||||||
seq2  TCCAGTGGGTTAGAATGAAAGAAACAAGATTTGATTGTGGGGAGTTAATA  148

seq1  G-ATA-TATTCAGATG-TCTTT--GACAAA--TAGAGCAGTCA-TTCT-A  174
      | ||| |||||||||| |||||   |||||   |||||||||| |||| |
seq2  GAATATTATTCAGATGTTCTTTTGAACAAAATAAGAGCAGTCATTTCTAA  198

seq1  AGGAGTT-CTAGGAATTGG-AAGTGATTAATATGGTTG-TCATGTGATAG  221
      ||||||| ||||||||||| |||||||||||||||||| |||||||||||
seq2  AGGAGTTCCTAGGAATTGGAAAGTGATTAATATGGTTGTTCATGTGATAG  248

seq1  ATCAT-AAACTTGGT-CCACTAGCCTATAGA-TTAAAAGA-CCCCAAGTG  267
      ||||| ||||||||| ||||||||||||||| |||||||| |||||||||
seq2  ATCATAAAACTTGGTCCCACTAGCCTATAGATTTAAAAGACCCCCAAGTG  298

seq1  -TTTCATAGCTGAAGTAGTGATTTAAGCTAGGGATCTACATTT-CCTATG  315
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTCATAGCTGAAGTAGTGATTTAAGCTAGGGATCTACATTTCCCTATG  348

seq1  TGGGGGGATAATGAGAAGCATTGTCAGTTCATCAGGCCAAAGAAGCCTTT  365
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGATAATGAGAAGCATTGTCAGTTCATCAGGCCAAAGAAGCCTTT  398

seq1  GAACTTACCTCTAAGTCAACTTGGCCTCTTAAATATGTTGCACATAACAC  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACCTCTAAGTCAACTTGGCCTCTTAAATATGTTGCACATAACAC  448

seq1  AGTGCTTGGAACTCACAGGATGACCAATAAATATATGTTGAATTGAATGG  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGAACTCACAGGATGACCAATAAATATATGTTGAATTGAATGG  498

seq1  TAGTTTTACCTGTAACAAGTCTATCCAAATCCAGGTGTAATTTGTTTGGT  515
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTACCTGTAACAAGTCTATCCAAATCCAGGTGTAATTTGTTTGGT  548

seq1  TTATGTAGTTTATGTATGAATATGTGATCAACAAGGCAACCCAGAAGACT  565
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTTTATGTATGAATATGTGATCAACAAGGCAACCCAGAAGACT  598

seq1  CTGACCTTACCAAGATTCAAATAAAATTATAATATCAAAATTAGTTAAAT  615
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTTACCAAGATTCAAATAAAATTATAATATCAAAATTAGTTAAAT  648

seq1  CATATGCGTCTCTATTTTTTCATGCATCTAATACAGAAGCAATTTTCACA  665
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCGTCTCTATTTTTTCATGCATCTAATACAGAAGCAATTTTCACA  698

seq1  CACCCTTGTTCACTTGTATATTTATTCATTCATTTCTATTGAACACCTAC  715
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGTTCACTTGTATATTTATTCATTCATTTCTATTGAACACCTAC  748

seq1  CTTGTGCTTAGAATTTCTTTAAGTTTTGTTTGTTTATATGTCAAAAATTT  765
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTTAGAATTTCTTTAAGTTTTGTTTGTTTATATGTCAAAAATTT  798

seq1  TTAGATGTAAAGTTGAATGAATTTAGGGATTCTAGATAGTTGAAAACCTT  815
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTAAAGTTGAATGAATTTAGGGATTCTAGATAGTTGAAAACCTT  848

seq1  GTTTATGAATATGTCTTTGAAAGTATTTCCAGAAGAGATTTATATTTGAA  865
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAATATGTCTTTGAAAGTATTTCCAGAAGAGATTTATATTTGAA  898

seq1  TTGGGAGACCAAGGAAGGAAGATTTTTCTTCACTTATGGCAACTAACACA  915
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGACCAAGGAAGGAAGATTTTTCTTCACTTATGGCAACTAACACA  948

seq1  TAATTGATGGAGCACCTAGACAGGACAGAAAGAGGAAATGTTGAATTTCT  965
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATGGAGCACCTAGACAGGACAGAAAGAGGAAATGTTGAATTTCT  998

seq1  ACACAGTAGTTTCTTAATGGTTTCTTTATTTTTATTTGCTGTGCATTAGT  1015
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAGTTTCTTAATGGTTTCTTTATTTTTATTTGCTGTGCATTAGT  1048

seq1  TTTGCCTCCGTGTATGCATTAGATGAGACCCTTTGCCTGCAGAGGCCAGA  1065
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCGTGTATGCATTAGATGAGACCCTTTGCCTGCAGAGGCCAGA  1098

seq1  AGAGGCTCTCAAATTGTTAGGTGTTTGTGAATTCTGGAAATGGAAGTTGG  1115
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTCAAATTGTTAGGTGTTTGTGAATTCTGGAAATGGAAGTTGG  1148

seq1  ACCTCTGTAAGAATTC  1131
      ||||||||||||||||
seq2  ACCTCTGTAAGAATTC  1164


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