BAC Information

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BAC

Clone NameB6Ng01-222M11
Chromosome14 (Build37)
Map Location 102,419,241 - 102,614,865
singlet/doubletdoublet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222M11.bB6Ng01-222M11.g
ACCGA037702GA037703
length8521,175
definitionB6Ng01-222M11.b B6Ng01-222M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,419,241 - 102,420,092)(102,613,681 - 102,614,865)
sequence
gaattctataatctgtgattgagccctgagtacattggagttaatagcta
tggttattcttctaagatgagcctctcagttttgtggagttattttaata
tgctattcaattagaaaaaaaataggagaaatgagcctctctgattcttg
actttggctgggagtcttggctggccatggagacaatctgtttttgctgg
ctatcgctcctgggttagttaatggcagtcattcagaagctcactgaaat
atctatttttatggagctgtggctttctgcctccagtgatggtcttggca
ttctttgcagcccaagcatgaaagaccccattcgcgcccttcactcttgc
tacagttcggggcccagagctcatattctttgtgcttcctcgggctcatt
agtcagtttgtagccatctgtctttgtaccattaacccactcgctggaca
ccacacagttgttgttttctgtgtctgttctggtaaattatgtgcctcgg
ctgctgtgcggtctgaggcacatgttgttctgatgacagttccctcagaa
gggataggggtggaaaatgcatctgtgacaatgggaagctggggcagagt
ttggtcctggagcagcagcaatcagatgagagcctcctttgatcttgcta
tagaaagcgagaagcaatggggaagtgtcatgctttcctggacagcaggt
aggatgagaatacagggacacagaagaggaaatcaaatggactttgaagt
aatcgtctggtgttggaagataaacaatagcaccaagagtgtcaactcga
gaacagttagcaatagtgatgttccttccttccttccttccttccatcct
tc

gaattcaggaaaggaagcaatagcatgtgggcatgtggggtgaggactta
ttagggatggttcaaagagaatatgagagagcaagaagcagaaggaaaat
aataaggttcccctgtctgcctgttgtagctgatgatgtagtgatggcat
acagctgaaccgagtcacagccctgctgtgtctttcatgttccctcattc
agaagtacacagaactaaagtggaagtggaaggtcagcccggtggttcaa
ccccttgaagcattgagaagttagctgtgttccatcacatgaatagtcca
caaaataatcacatgtttgtttcttaagataagcagcagagttttaggaa
aaatttcccttttagagtattggttcccaggtgttgaactgatttctggt
ttccagttggggaaatgaccacttgggaattccacttttggaaatgtctt
agcatgggatttggtctatcatgcttgatattatttcttcagttgttggg
acaatacagataatttttattaaattattaaaattcatccaaatcaatta
tttattatatcagttactataatattttgtgagaaattaaatgttttact
catgaaatgtgcttttctcttatgtttctattttttatcatttttatcac
aagccaagtcattcaagccaagtcattatagccatatattctgtgcatgc
ttgtacacactaatgaatgcacatttattattatttaccagtctcctttt
gttgttttgtttttgtgttttttcatctgcctatcatgaacaaatgcaca
atttgcctaattatactacttaggattatgtcaggatccatgactttgtg
atgaagacaaaagatcgcccattgtttgctgagagaccagaaactccatc
tagtgtccatgttttttcagccatctttgactttctgtgatttatttctc
ctctgctggttccttgaagacaacaccttaaaaattcccacaaagctcta
atgcatttgtctctgaggaagttcttgacatatttacgcaaggactgtat
gcagaatattggattccaaatttaaagttttcaatacaaggagattatca
ctaccattcaccctggattcttcacggccacaaattcatttgcccattaa
gccataaagttgaattagaacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102419241_102420092
seq2: B6Ng01-222M11.b_43_894

seq1  GAATTCTATAATCTGTGATTGAGCCCTGAGTACATTGGAGTTAATAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATCTGTGATTGAGCCCTGAGTACATTGGAGTTAATAGCTA  50

seq1  TGGTTATTCTTCTAAGATGAGCCTCTCAGTTTTGTGGAGTTATTTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTCTTCTAAGATGAGCCTCTCAGTTTTGTGGAGTTATTTTAATA  100

seq1  TGCTATTCAATTAGAAAAAAAATAGGAGAAATGAGCCTCTCTGATTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCAATTAGAAAAAAAATAGGAGAAATGAGCCTCTCTGATTCTTG  150

seq1  ACTTTGGCTGGGAGTCTTGGCTGGCCATGGAGACAATCTGTTTTTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCTGGGAGTCTTGGCTGGCCATGGAGACAATCTGTTTTTGCTGG  200

seq1  CTATCGCTCCTGGGTTAGTTAATGGCAGTCATTCAGAAGCTCACTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGCTCCTGGGTTAGTTAATGGCAGTCATTCAGAAGCTCACTGAAAT  250

seq1  ATCTATTTTTATGGAGCTGTGGCTTTCTGCCTCCAGTGATGGTCTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTTATGGAGCTGTGGCTTTCTGCCTCCAGTGATGGTCTTGGCA  300

seq1  TTCTTTGCAGCCCAAGCATGAAAGACCCCATTCGCGCCCTTCACTCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCAGCCCAAGCATGAAAGACCCCATTCGCGCCCTTCACTCTTGC  350

seq1  TACAGTTCGGGGCCCAGAGCTCATATTCTTTGTGCTTCCTCGGGCTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCGGGGCCCAGAGCTCATATTCTTTGTGCTTCCTCGGGCTCATT  400

seq1  AGTCAGTTTGTAGCCATCTGTCTTTGTACCATTAACCCACTCGCTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTGTAGCCATCTGTCTTTGTACCATTAACCCACTCGCTGGACA  450

seq1  CCACACAGTTGTTGTTTTCTGTGTCTGTTCTGGTAAATTATGTGCCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTTGTTGTTTTCTGTGTCTGTTCTGGTAAATTATGTGCCTCGG  500

seq1  CTGCTGTGCGGTCTGAGGCACATGTTGTTCTGATGACAGTTCCCTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGCGGTCTGAGGCACATGTTGTTCTGATGACAGTTCCCTCAGAA  550

seq1  GGGATAGGGGTGGAAAATGCATCTGTGACAATGGGAAGCTGGGGCAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGGGTGGAAAATGCATCTGTGACAATGGGAAGCTGGGGCAGAGT  600

seq1  TTGGTCCTGGAGCAGCAGCAATCAGATGAGAGCCTCCTTTGATCTTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGGAGCAGCAGCAATCAGATGAGAGCCTCCTTTGATCTTGCTA  650

seq1  TAGAAAGCGAGAAGCAATGGGGAAGTGTCATGCTTTCCTGGACAGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCGAGAAGCAATGGGGAAGTGTCATGCTTTCCTGGACAGCAGGT  700

seq1  AGGATGAGAATACAGGGACACAGAAGAGGAAATCAAATGGACTTTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGAATACAGGGACACAGAAGAGGAAATCAAATGGACTTTGAAGT  750

seq1  AATCGTCTGGTGTTGGAAGATAAACAATAGCACCAAGAGTGTCAACTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTCTGGTGTTGGAAGATAAACAATAGCACCAAGAGTGTCAACTCGA  800

seq1  GAACAGTTAGCAATAGTGATGTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAACAGTTAGCAATAGTGATGTTCCTTCCTTCCTTCCTTCCTTCCATCCT  850

seq1  TC  852
      ||
seq2  TC  852


seq1: chr14_102613681_102614865
seq2: B6Ng01-222M11.g_68_1242 (reverse)

seq1  GTTTGTTCTAATCTTAACCTTCTATGGCTTTAAAATATGGCAATAGATTT  50
      |||||||||||| | |||  | ||||||||   |||  |||||  || ||
seq2  GTTTGTTCTAAT-TCAAC--TTTATGGCTT---AAT-GGGCAAATGAATT  43

seq1  GTTGGCCGTTGAAGAAATTCAGGGTG-ATGGTAGTGATATATCTTCCTTT  99
        |||||| ||||| ||| ||||||| |||||||||||| ||||  | ||
seq2  TGTGGCCG-TGAAG-AATCCAGGGTGAATGGTAGTGATA-ATCT--CCTT  88

seq1  GTATTGAAAACTTT-AATTTTGAATCCAATATACTGCATACAGT-CTTGC  147
      |||||||||||||| ||||| ||||||||||| ||||||||||| |||||
seq2  GTATTGAAAACTTTAAATTTGGAATCCAATATTCTGCATACAGTCCTTGC  138

seq1  GTAAATATGTCAAG-ACTTCCTCAGAGACAAATGCATTAGAGCTTTGTGG  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAAATATGTCAAGAACTTCCTCAGAGACAAATGCATTAGAGCTTTGTGG  188

seq1  GAATTTTTAAAGGTGTTGTCTTCAAGGAACCAGCAGAGGAGAAATAAATC  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTT-AAGGTGTTGTCTTCAAGGAACCAGCAGAGGAGAAATAAATC  237

seq1  ACAGAAAGTCAAAAGATGGCTGAAAAAACATGGACACTAGATGGAGTTTC  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTC-AAAGATGGCTGAAAAAACATGGACACTAGATGGAGTTTC  286

seq1  TGGTCTCTCAGCAAACAATGGGCGATCTTTTGTCTTCATCACAAAGTCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCAGCAAACAATGGGCGATCTTTTGTCTTCATCACAAAGTCAT  336

seq1  GGATCCTGACATAATCCTAAGTAGTATAATTAGGCAAATTGTGCATTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGACATAATCCTAAGTAGTATAATTAGGCAAATTGTGCATTTGT  386

seq1  TCATGATAGGCAGATGAAAAAACACAAAAACAAAACAACAAAAGGAGACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAGGCAGATGAAAAAACACAAAAACAAAACAACAAAAGGAGACT  436

seq1  GGTAAATAATAATAAATGTGCATTCATTAGTGTGTACAAGCATGCACAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAATAATAAATGTGCATTCATTAGTGTGTACAAGCATGCACAGA  486

seq1  ATATATGGCTATAATGACTTGGCTTGAATGACTTGGCTTGTGATAAAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGCTATAATGACTTGGCTTGAATGACTTGGCTTGTGATAAAAAT  536

seq1  GATAAAAAATAGAAACATAAGAGAAAAGCACATTTCATGAGTAAAACATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAATAGAAACATAAGAGAAAAGCACATTTCATGAGTAAAACATT  586

seq1  TAATTTCTCACAAAATATTATAGTAACTGATATAATAAATAATTGATTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCACAAAATATTATAGTAACTGATATAATAAATAATTGATTTG  636

seq1  GATGAATTTTAATAATTTAATAAAAATTATCTGTATTGTCCCAACAACTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTTTAATAATTTAATAAAAATTATCTGTATTGTCCCAACAACTG  686

seq1  AAGAAATAATATCAAGCATGATAGACCAAATCCCATGCTAAGACATTTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATATCAAGCATGATAGACCAAATCCCATGCTAAGACATTTCC  736

seq1  AAAAGTGGAATTCCCAAGTGGTCATTTCCCCAACTGGAAACCAGAAATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGAATTCCCAAGTGGTCATTTCCCCAACTGGAAACCAGAAATCA  786

seq1  GTTCAACACCTGGGAACCAATACTCTAAAAGGGAAATTTTTCCTAAAACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACACCTGGGAACCAATACTCTAAAAGGGAAATTTTTCCTAAAACT  836

seq1  CTGCTGCTTATCTTAAGAAACAAACATGTGATTATTTTGTGGACTATTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTATCTTAAGAAACAAACATGTGATTATTTTGTGGACTATTCA  886

seq1  TGTGATGGAACACAGCTAACTTCTCAATGCTTCAAGGGGTTGAACCACCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAACACAGCTAACTTCTCAATGCTTCAAGGGGTTGAACCACCG  936

seq1  GGCTGACCTTCCACTTCCACTTTAGTTCTGTGTACTTCTGAATGAGGGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCTTCCACTTCCACTTTAGTTCTGTGTACTTCTGAATGAGGGAA  986

seq1  CATGAAAGACACAGCAGGGCTGTGACTCGGTTCAGCTGTATGCCATCACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGACACAGCAGGGCTGTGACTCGGTTCAGCTGTATGCCATCACT  1036

seq1  ACATCATCAGCTACAACAGGCAGACAGGGGAACCTTATTATTTTCCTTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCAGCTACAACAGGCAGACAGGGGAACCTTATTATTTTCCTTCT  1086

seq1  GCTTCTTGCTCTCTCATATTCTCTTTGAACCATCCCTAATAAGTCCTCAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGCTCTCTCATATTCTCTTTGAACCATCCCTAATAAGTCCTCAC  1136

seq1  CCCACATGCCCACATGCTATTGCTTCCTTTCCTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCCCACATGCTATTGCTTCCTTTCCTGAATTC  1175


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