BAC Information

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BAC

Clone NameB6Ng01-223A21
Chromosome14 (Build37)
Map Location 93,733,829 - 93,734,935
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A21.b
ACCGA037904
length1,110
definitionB6Ng01-223A21.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatagtgatatccaagtataattttaatgcccaatattattatt
gtaacctatactgtatacgttattattgttcacaagaacaaaaaagcaac
acccataaatttttaaatattgagaaataaagaacagtgtctggggagag
tgatcaccataaaataactgctgagcaagcatatcgatatgagtttgaag
tcgcagaatcaaacaaacaaacaaaaaaaagccagtcacagtcatggctg
tggttgtgcgatgtcagaagtggaagaggttgtggaatcctgaaaaatcc
ttggccaggcaatatcaactgtcttcagccatgaatgatagtgcctttaa
aaaatgttcacatggatgcaatcacatatgcatacttatgcatgttcatt
tgctaacacagctacacaaataagtaactataccatgcacaacacaatat
ccactccaaaacttaaaaataaaatatattgagttgataaagagcaaaga
tatcaaaccctaaaaatgtctcaaataatattatacaggctttcaagaca
tggcgaattttcaatttttcatcactttctccactactgtgattaaacta
atattactaactgtacagtacttagaggaatgttataaaatctgtcttct
gttaaatttcttaaataaagacttcttgtaatttgaagatatcaaatata
caagacaaattctaaactctatgaagtattattttctaaacaataactgg
actctgtatctttttacttttgttttttatcttttataaaaagactctgt
cttgaaaaaggaaggaaagtgatggagggaaatggacatctacctttagc
caccacgtgcatgaatgaacatggaaacagccagctatgtgtcatgttac
tttaaactttccaactcagaggcaatattaatgtaacctctatgcatcag
aatgcgcctttatgtttgcctgtactcaataggggatgttagattctata
tcatcagtagtaaataattatcttattaatgatgtcagataaatttttaa
gaatttaatgcttaggaatgagaaaataatccatgctcccagaacatagc
caaggatgag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93733829_93734935
seq2: B6Ng01-223A21.b_42_1151 (reverse)

seq1  CTCATCCCTTGCTATG-TCTGGGAGCATG--ATATTTTCTCATTCTTAAA  47
      ||||||| | |||||| ||||||||||||   ||||||||||||| | ||
seq2  CTCATCCTTGGCTATGTTCTGGGAGCATGGATTATTTTCTCATTCCT-AA  49

seq1  GCA-TAAATTTTTAAAAATTTATCTGACATCATTAATAAGATAATTATTT  96
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAATTCTTAAAAATTTATCTGACATCATTAATAAGATAATTATTT  99

seq1  ACTACTGATGATATAGAATCTAAAATCCCCTATTGAGTACAGGCAAACAT  146
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTACTGATGATATAGAATCTAACATCCCCTATTGAGTACAGGCAAACAT  149

seq1  AAAGGCGCATTCTGATGCATAGAGGTTACATTAATATTGCCTCTGAGTTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGCATTCTGATGCATAGAGGTTACATTAATATTGCCTCTGAGTTG  199

seq1  GAAAGTTTAAAGTAACATGACACATAGCTGGCTGTTTCCATGTTCATTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTAAAGTAACATGACACATAGCTGGCTGTTTCCATGTTCATTCA  249

seq1  TGCACGTGGTGGCTAAAGGTAGATGTCCATTTCCCTCCATCACTTTCCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGGTGGCTAAAGGTAGATGTCCATTTCCCTCCATCACTTTCCTT  299

seq1  CCTTTTTCAAGACAGAGTCTTTTTATAAAAGATAAAAAACAAAAGTAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCAAGACAGAGTCTTTTTATAAAAGATAAAAAACAAAAGTAAAA  349

seq1  AGATACAGAGTCCAGTTATTGTTTAGAAAATAATACTTCATAGAGTTTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGAGTCCAGTTATTGTTTAGAAAATAATACTTCATAGAGTTTAG  399

seq1  AATTTGTCTTGTATATTTGATATCTTCAAATTACAAGAAGTCTTTATTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCTTGTATATTTGATATCTTCAAATTACAAGAAGTCTTTATTTA  449

seq1  AGAAATTTAACAGAAGACAGATTTTATAACATTCCTCTAAGTACTGTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAACAGAAGACAGATTTTATAACATTCCTCTAAGTACTGTACA  499

seq1  GTTAGTAATATTAGTTTAATCACAGTAGTGGAGAAAGTGATGAAAAATTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAATATTAGTTTAATCACAGTAGTGGAGAAAGTGATGAAAAATTG  549

seq1  AAAATTCGCCATGTCTTGAAAGCCTGTATAATATTATTTGAGACATTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCGCCATGTCTTGAAAGCCTGTATAATATTATTTGAGACATTTTT  599

seq1  AGGGTTTGATATCTTTGCTCTTTATCAACTCAATATATTTTATTTTTAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGATATCTTTGCTCTTTATCAACTCAATATATTTTATTTTTAAG  649

seq1  TTTTGGAGTGGATATTGTGTTGTGCATGGTATAGTTACTTATTTGTGTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTGGATATTGTGTTGTGCATGGTATAGTTACTTATTTGTGTAG  699

seq1  CTGTGTTAGCAAATGAACATGCATAAGTATGCATATGTGATTGCATCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAGCAAATGAACATGCATAAGTATGCATATGTGATTGCATCCAT  749

seq1  GTGAACATTTTTTAAAGGCACTATCATTCATGGCTGAAGACAGTTGATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATTTTTTAAAGGCACTATCATTCATGGCTGAAGACAGTTGATAT  799

seq1  TGCCTGGCCAAGGATTTTTCAGGATTCCACAACCTCTTCCACTTCTGACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCCAAGGATTTTTCAGGATTCCACAACCTCTTCCACTTCTGACA  849

seq1  TCGCACAACCACAGCCATGACTGTGACTGGCTTTTTTTTGTTTGTTTGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACAACCACAGCCATGACTGTGACTGGCTTTTTTTTGTTTGTTTGTT  899

seq1  TGATTCTGCGACTTCAAACTCATATCGATATGCTTGCTCAGCAGTTATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGCGACTTCAAACTCATATCGATATGCTTGCTCAGCAGTTATTT  949

seq1  TATGGTGATCACTCTCCCCAGACACTGTTCTTTATTTCTCAATATTTAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGATCACTCTCCCCAGACACTGTTCTTTATTTCTCAATATTTAAA  999

seq1  AATTTATGGGTGTTGCTTTTTTGTTCTTGTGAACAATAATAACGTATACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGGGTGTTGCTTTTTTGTTCTTGTGAACAATAATAACGTATACA  1049

seq1  GTATAGGTTACAATAATAATATTGGGCATTAAAATTATACTTGGATATCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGTTACAATAATAATATTGGGCATTAAAATTATACTTGGATATCA  1099

seq1  CTATAGAATTC  1107
      |||||||||||
seq2  CTATAGAATTC  1110