BAC Information

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BAC

Clone NameB6Ng01-223J01
Chromosome14 (Build37)
Map Location 102,561,960 - 102,690,986
singlet/doubletdoublet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223J01.bB6Ng01-223J01.g
ACCGA038273GA038274
length981774
definitionB6Ng01-223J01.b B6Ng01-223J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,690,012 - 102,690,986)(102,561,960 - 102,562,729)
sequence
gaattcaaggcttacatcctatttgtattttcctctttaaaattctggag
atatttctactgagagcatagcagcagaacacaaatttccataaattggt
ccacgcagggggatttctagacttttcttttctccctcttctctattgct
gggtttagagggtcaaaagactcagggttcaaaactgtgatctactgaga
ctatggatttgtcaccatggcaacaagcaaaataaatcagtaagcaagga
taagagaaaatacactcctccattgtcctgcaacaagcaagttatcaatg
cagcagaactctttccaaataagacagcagtcctattgtaaaggtgacta
atgccacttctatccctctaccttctgacattttcttctgctctaaaaat
ggaactacttaaatgactgggcattaattttgaggtagtccatactttac
ttgaaattgcaattctacctaatactatcaatttctcactttagtgtaca
aactattcaaggctagattaagtataattggaagttaatgatttcttttt
gcctaagtgggttgaagcatacgaactagaagaaacatttagttagcaaa
tatgaacagcagaacttagaatacgttttgcatgtgaggaatcagtcaag
cagtctcagaaatgtagttgctcatagaaagcatgctggctcactttgaa
tctggaagaagcaaaggaactggatgaagagttgggcattctacccttct
ttcattatcagcaaacctatctgattgataaccacacaagtgttgctccc
tatggcatacaacggagtggtagtgactatgcatgtaagggtttatgaca
tggggagtgctatagtggctgacatcaaagctctgaactataacacctat
tagtttgtagcttcacatttagattctaatagtcccacatgggtaagaga
ttattgatatttttaaattgtgattgtactt
gaattcttttaccacacataagaagaagagattatatgcacacacatggg
taagaaaatgtcatcctctttcttggagcacaaggaagaaatcaagagat
ttttggtgtcttgatgggtgaaaatgatgaggaagaaagcagaaggaagc
tgaaagtttgtttccagtttcattctctaagaataaaacacacacttcct
tttcattttgaatcactggttcagatagccatttatcttgataatataaa
agaaaagcatttaaaatatgtcacatttcaaatttttgcctaagtgatta
gtttctgctggttcggcattggtaaacataggaaagagatttggtggtaa
acattgtcagtgctataaatagtacaaaaaagcaacctgtggcttcttca
tggacataaatactgagaacctagcttttgcttgtcaaagtccaaacctg
tgtgcaccatggctatctgataaacaaaccactgtttccagcagctgaat
ttggttgaatctgactttatgtcaacatcgtgtggaaaaattgcattgta
tcaaagataacatgtgcaaagtcacctagaaaatgacaaagtcaatcagt
caaaattcaaaacctgagaatgtgagaatgatgattgtttatgggttttc
cactttataattcttcagtgattttggataattattacattaggtgagaa
gggactttgaggggaggggctaacatgggttcctaaggccttcataagaa
tgttgaacacacgcagttcctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102690012_102690986
seq2: B6Ng01-223J01.b_50_1030 (reverse)

seq1  AAGTACAATCACATTTTTAAAAATAATACATAATCTCTT-CCCTTGT-GG  48
      |||||||||||||  ||||||||| ||  |||||||||| ||| ||| ||
seq2  AAGTACAATCACA-ATTTAAAAAT-ATCAATAATCTCTTACCCATGTGGG  48

seq1  ACTATT-GAATCTAAATTGTGATGCTAC-AACTAATAGTTGTTATAGTTC  96
      |||||| ||||||||| ||||| ||||| ||||||||| |||||||||||
seq2  ACTATTAGAATCTAAA-TGTGAAGCTACAAACTAATAGGTGTTATAGTTC  97

seq1  AGAGCTCTGCTGTCAGCCACTATAGCACT-CCCATGTCAT-AACCCTTAC  144
      |||||| || ||||||||||||||||||| |||||||||| |||||||||
seq2  AGAGCTTTGATGTCAGCCACTATAGCACTCCCCATGTCATAAACCCTTAC  147

seq1  ATGCATAGTCACTACCACTCCGTTGTATGCCATAGGGAGCAAC-CTTGTG  193
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGCATAGTCACTACCACTCCGTTGTATGCCATAGGGAGCAACACTTGTG  197

seq1  TGGTTATCAATCAGATAGGTTTGCTGATAATGAAAGAA-GGTAGAATGCC  242
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTTATCAATCAGATAGGTTTGCTGATAATGAAAGAAGGGTAGAATGCC  247

seq1  CAACTCTTCATCCAGTTCCTTTGCTTCTTCCAGATTC-AAGTGAGCCAGC  291
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACTCTTCATCCAGTTCCTTTGCTTCTTCCAGATTCAAAGTGAGCCAGC  297

seq1  ATGCTTTCTATGAGCAACTACATTTCTGAGACTGCTTGACTGATTCCTCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTATGAGCAACTACATTTCTGAGACTGCTTGACTGATTCCTCA  347

seq1  CATGCAAAACGTATTCTAAGTTCTGCTGTTCATATTTGCTAACTAAATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAACGTATTCTAAGTTCTGCTGTTCATATTTGCTAACTAAATGT  397

seq1  TTCTTCTAGTTCGTATGCTTCAACCCACTTAGGCAAAAAGAAATCATTAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGTTCGTATGCTTCAACCCACTTAGGCAAAAAGAAATCATTAA  447

seq1  CTTCCAATTATACTTAATCTAGCCTTGAATAGTTTGTACACTAAAGTGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATTATACTTAATCTAGCCTTGAATAGTTTGTACACTAAAGTGAG  497

seq1  AAATTGATAGTATTAGGTAGAATTGCAATTTCAAGTAAAGTATGGACTAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATAGTATTAGGTAGAATTGCAATTTCAAGTAAAGTATGGACTAC  547

seq1  CTCAAAATTAATGCCCAGTCATTTAAGTAGTTCCATTTTTAGAGCAGAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTAATGCCCAGTCATTTAAGTAGTTCCATTTTTAGAGCAGAAG  597

seq1  AAAATGTCAGAAGGTAGAGGGATAGAAGTGGCATTAGTCACCTTTACAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCAGAAGGTAGAGGGATAGAAGTGGCATTAGTCACCTTTACAAT  647

seq1  AGGACTGCTGTCTTATTTGGAAAGAGTTCTGCTGCATTGATAACTTGCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTGTCTTATTTGGAAAGAGTTCTGCTGCATTGATAACTTGCTT  697

seq1  GTTGCAGGACAATGGAGGAGTGTATTTTCTCTTATCCTTGCTTACTGATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGACAATGGAGGAGTGTATTTTCTCTTATCCTTGCTTACTGATT  747

seq1  TATTTTGCTTGTTGCCATGGTGACAAATCCATAGTCTCAGTAGATCACAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTTGTTGCCATGGTGACAAATCCATAGTCTCAGTAGATCACAG  797

seq1  TTTTGAACCCTGAGTCTTTTGACCCTCTAAACCCAGCAATAGAGAAGAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACCCTGAGTCTTTTGACCCTCTAAACCCAGCAATAGAGAAGAGG  847

seq1  GAGAAAAGAAAAGTCTAGAAATCCCCCTGCGTGGACCAATTTATGGAAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGAAAAGTCTAGAAATCCCCCTGCGTGGACCAATTTATGGAAAT  897

seq1  TTGTGTTCTGCTGCTATGCTCTCAGTAGAAATATCTCCAGAATTTTAAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTGCTGCTATGCTCTCAGTAGAAATATCTCCAGAATTTTAAAG  947

seq1  AGGAAAATACAAATAGGATGTAAGCCTTGAATTC  975
      ||||||||||||||||||||||||||||||||||
seq2  AGGAAAATACAAATAGGATGTAAGCCTTGAATTC  981

seq1: chr14_102561960_102562729
seq2: B6Ng01-223J01.g_71_844

seq1  GAATTCTTTTACCACACATAAGAAGAAGAGATTATATGCACACACATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACCACACATAAGAAGAAGAGATTATATGCACACACATGGG  50

seq1  TAAGAAAATGTCATCCTCTTTCTTGGAGCACAAGGAAGAAATCAAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATGTCATCCTCTTTCTTGGAGCACAAGGAAGAAATCAAGAGAT  100

seq1  TTTTGGTGTCTTGATGGGTGAAAATGATGAGGAAGAAAGCAGAAGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGTCTTGATGGGTGAAAATGATGAGGAAGAAAGCAGAAGGAAGC  150

seq1  TGAAAGTTTGTTTCCAGTTTCATTCTCTAAGAATAAAACACACACTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTTGTTTCCAGTTTCATTCTCTAAGAATAAAACACACACTTCCT  200

seq1  TTTCATTTTGAATCACTGGTTCAGATAGCCATTTATCTTGATAATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTGAATCACTGGTTCAGATAGCCATTTATCTTGATAATATAAA  250

seq1  AGAAAAGCATTTAAAATATGTCACATTTCAAATTTTTGCCTAAGTGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCATTTAAAATATGTCACATTTCAAATTTTTGCCTAAGTGATTA  300

seq1  GTTTCTGCTGGTTCGGCATTGGTAAACATAGGAAAGAGATTTGGTGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTGGTTCGGCATTGGTAAACATAGGAAAGAGATTTGGTGGTAA  350

seq1  ACATTGTCAGTGCTATAAATAGTACAAAAAAGCAACCTGTGGCTTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCAGTGCTATAAATAGTACAAAAAAGCAACCTGTGGCTTCTTCA  400

seq1  TGGACATAAATACTGAGAACCTAGCTTTTGCTTGTCAAAGTCCAAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATAAATACTGAGAACCTAGCTTTTGCTTGTCAAAGTCCAAACCTG  450

seq1  TGTGCACCATGGCTATCTGATAAACAAACCACTGTTTCCAGCAGCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCATGGCTATCTGATAAACAAACCACTGTTTCCAGCAGCTGAAT  500

seq1  TTGGTTGAATCTGACTTTATGTCAACATCGTGTGGAAAAA-TGCATTGTA  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGGTTGAATCTGACTTTATGTCAACATCGTGTGGAAAAATTGCATTGTA  550

seq1  TCAAAGATAACATGTGCAAAGTCACCTAGAAAATGACAAAGTCAATCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATAACATGTGCAAAGTCACCTAGAAAATGACAAAGTCAATCAGT  600

seq1  CAAAATTCAAAACCTGAGAATGTGAGAATGATGATTGTTTATGGG-TTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAAATTCAAAACCTGAGAATGTGAGAATGATGATTGTTTATGGGTTTTC  650

seq1  CAC-TTATAATTCTTCAGTGATTTTGGATAATTATTACA-TAGGTGAGAA  696
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTTTATAATTCTTCAGTGATTTTGGATAATTATTACATTAGGTGAGAA  700

seq1  GGGACTTTGAGGGGAGGGGCTAACATGGGTTCCTAAGGCCTCAGTAAGAA  746
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  GGGACTTTGAGGGGAGGGGCTAACATGGGTTCCTAAGGCCTTCATAAGAA  750

seq1  TGTTGAACACACGCAGTTCCTGAT  770
      ||||||||||||||||||||||||
seq2  TGTTGAACACACGCAGTTCCTGAT  774