BAC Information

Click to search

BAC

Clone NameB6Ng01-224C07
Chromosome14 (Build37)
Map Location 111,575,684 - 111,576,737
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224C07.bB6Ng01-224C07.g
ACCGA038687GA038688
length1691,051
definitionB6Ng01-224C07.b B6Ng01-224C07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcaactaaggaataccaaatggctgaaagcacctaaaaaatgttcaacat
ccttagtcatcagggatatgaaaatctaaacaaccttgagattccatctc
acaccaatcagaatgactacaataaaaataaaaaaaaaaaaaaactcagg
tgtttggaagctgattatg

gaattcatttttggaatttcatcgggtttatagattcaattaaatggaat
tgacatacgtacaatgttgtatatcctcagagaatggagctagaagttta
gggaattaaaagcagactgtttaaaggaaaaatgtatagaaaggaaactg
ctgacacagaagttctacaagtcttagagatgcttattttttttgaatat
aaaatggccaaattagtgtgtttggtatgaagtatgaagtgccaaatgcc
acaggcaaagtgtcttaacaataatgagtatttccttatgagtttttaac
gtttagaagactgtataaataaataatagcaggctattatttatttctgg
atttatatttacttgttcaaaaaatcagtcttttaggttctggggagatg
gctcagtggctgaaggatttactatgctgtcatgaagaatgtaattctaa
taatcttccagacacatataaaagcaagaaaaatgtgagcattgtttcta
attttagaatttatgaaatatggataggtcagatctcttggacaagatgg
ttgggtaagttatcaagactggacaagatccaggtccattgagagacaac
acttcaataaaatagagactgtatgaggaagataccaggtatcaacttca
gacccccacatatccattcatatccacagatctacacacataaatttgcc
tcatacatggagatatatgcacatgtacaacatgtccacatacccatgca
aaatcataaaaggaaggtatatcttgtgttcttttcttttttttttttaa
tttttttattaggtattttcctcgtttacattttcttttttttttttttc
cattttttattaggtattttcgctcatttacatttgcaatgctataccaa
aagttcccattttcaatgctatcccaaaagtccgccataccaccccccaa
tccgctacccacccactcccccttttgggccctggggtttccctgtactg
ggcaatataaagtttgcatgtcaatggccctctctttgcatgatagcgac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111575684_111576737
seq2: B6Ng01-224C07.g_69_1119

seq1  GAATTCATTTTTGGAATTTCATCGGGTTTATAGATTCAATTAAATGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTGGAATTTCATCGGGTTTATAGATTCAATTAAATGGAAT  50

seq1  TGACATACGTACAATGTTGTATATCCTCAGAGAATGGAGCTAGAAGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACGTACAATGTTGTATATCCTCAGAGAATGGAGCTAGAAGTTTA  100

seq1  GGGAATTAAAAGCAGACTGTTTAAAGGAAAAATGTATAGAAAGGAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTAAAAGCAGACTGTTTAAAGGAAAAATGTATAGAAAGGAAACTG  150

seq1  CTGACACAGAAGTTCTACAAGTCTTAGAGATGCTTATTTTTTTTGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACAGAAGTTCTACAAGTCTTAGAGATGCTTATTTTTTTTGAATAT  200

seq1  AAAATGGCCAAATTAGTGTGTTTGGTATGAAGTATGAAGTGCCAAATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCCAAATTAGTGTGTTTGGTATGAAGTATGAAGTGCCAAATGCC  250

seq1  ACAGGCAAAGTGTCTTAACAATAATGAGTATTTCCTTATGAGTTTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAAGTGTCTTAACAATAATGAGTATTTCCTTATGAGTTTTTAAC  300

seq1  GTTTAGAAGACTGTATAAATAAATAATAGCAGGCTATTATTTATTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAGACTGTATAAATAAATAATAGCAGGCTATTATTTATTTCTGG  350

seq1  ATTTATATTTACTTGTTCAAAAAATCAGTCTTTTAGGTTCTGGGGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTACTTGTTCAAAAAATCAGTCTTTTAGGTTCTGGGGAGATG  400

seq1  GCTCAGTGGCTGAAGGATTTACTATGCTGTCATGAAGAATGTAATTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGCTGAAGGATTTACTATGCTGTCATGAAGAATGTAATTCTAA  450

seq1  TAATCTTCCAGACACATATAAAAGCAAGAAAAATGTGAGCATTGTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCCAGACACATATAAAAGCAAGAAAAATGTGAGCATTGTTTCTA  500

seq1  ATTTTAGAATTTATGAAATATGGATAGGTCAGATCTCTTGGACAAGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAATTTATGAAATATGGATAGGTCAGATCTCTTGGACAAGATGG  550

seq1  TTGGGTAAGTTATCAAGACTGGACAAGATCCAGGTCCATTGAGAGACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAGTTATCAAGACTGGACAAGATCCAGGTCCATTGAGAGACAAC  600

seq1  ACTTCAATAAAATAGAGACTGTATGAGGAAGATACCAGGTATCAACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATAAAATAGAGACTGTATGAGGAAGATACCAGGTATCAACTTCA  650

seq1  GACCCCCACATATCCATTCATATCCACAGATCTACACACATAAATTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCACATATCCATTCATATCCACAGATCTACACACATAAATTTGCC  700

seq1  TCATACATGGAGATATATGCACATGTACAACATGTCCACATACCCATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGGAGATATATGCACATGTACAACATGTCCACATACCCATGCA  750

seq1  AAATCATAAAAGGAAGGTATATCTTGTGTTCTTTTCTTTTTTTTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAAAAGGAAGGTATATCTTGTGTTCTTTTCTTTTTTTTTTTTAA  800

seq1  TTTTTTTATTAGGTATTTTCCTCGTTTACATTTTCTTTTTTTTTTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTAGGTATTTTCCTCGTTTACATTTTCTTTTTTTTTTTTTTC  850

seq1  CATTTTTTATTAGGTA-TTTCGCTCATTTACATTTGCAATGCTATACCAA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTAGGTATTTTCGCTCATTTACATTTGCAATGCTATACCAA  900

seq1  AAG-TCCCATTTTCAATGCTATCCCAAAAGTCCGCCATACCCACCCCCCC  948
      ||| |||||||||||||||||||||||||||||||||||||   ||||||
seq2  AAGTTCCCATTTTCAATGCTATCCCAAAAGTCCGCCATACC--ACCCCCC  948

seq1  AATCCGCTACCCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCCCTGTAC  998
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  AATCCGCTACCCACCCACTCCCCCTTTTGGGCCCTGGGGTTTCCCTGTAC  998

seq1  TGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTGCAGTGATAG  1048
      ||||  ||||||||||||||||| |||||| |||||||||||| ||||||
seq2  TGGGCAATATAAAGTTTGCATGT-CAATGGCCCTCTCTTTGCA-TGATAG  1046

seq1  CCGACT  1054
       |||||
seq2  -CGACT  1051


| Home | SequenceCutter | Blast | Download |