BAC Information

Click to search

BAC

Clone NameB6Ng01-225C11
Chromosome14 (Build37)
Map Location 74,223,291 - 74,362,071
singlet/doubletdoublet
Overlap geneEG629578
Upstream geneLOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
Downstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C11.bB6Ng01-225C11.g
ACCGA039419GA039420
length1,1801,016
definitionB6Ng01-225C11.b B6Ng01-225C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,360,890 - 74,362,071)(74,223,291 - 74,224,297)
sequence
gaattcttagtgcacagttggtaaagttgcctgggtagattaggaggtgt
ggtcttgctagaagtctgtcagtgagggtaggtttggagtttttgggttt
aaagacttggaccatttggagtttgcttcctctgctttctgttcaagatg
tgagctctagactttctgcttcagccacagcatctgctacatgctgacac
atttcccaccatgacatactcttatctctctggaagcataagtcaagtaa
accattgctcctatgagctgccttgtttgtgggatctcctcccagcattg
gtaaccattggtaaccattgctcctatgagctgccttgttcgtggcattt
cctcccagcattggtaaccaacacaaccatctgacattatctatatttta
tgtgttcattttcactgaaaaacatataacacttcaaccatttttcattg
ctatatccctagtgccaggaggagtgactttaatgtagtgtatttccagt
aaatattatcaaatagattgatcctaagtgagctataaaataaataaact
taaaaattataaggactggggaaagaactaaaaatcttaaagtaagagcc
aactgctttgaaaagaaaaataattccaatctatgtcctagaaaaaaaat
gattgctggacttaaaaccttgataacaaggtgaactggctggttggaca
tagccagacaagatgttagaaagctagaaggaataatctagaaggcagcg
tgaataaagaagtaaaaattaggaaagtacatggagaacagaatgagaga
agaaaagaagttccagaagtggggaagagaaaatcaggagagacattcaa
aagatatgattcattttttttccacaagcaagaatataagaattgatgaa
ccatgctgggcttggtgtcacagaaacttaatcccagcacttaggagcag
aagcaaggcagatgtctgtgagtttgagaaacagcctgtctacaagaaaa
ttctaatgtagccaggtctgtataattgaagctttgtcccgacctcacta
ttgtttttaataaaattgagtaaccaatgaataccaggattcagatgctt
gtggtgaaagagccttgctagctagaaagcagaaaaaaagacccagctga
cattccctcctccagtcaatgtcgaaagaa
gaattcatatatgcatagcctctggtgacagtctgtggaagagagaggct
cccttccagcctctggtgacagtctgtgggagagagagactccctcctgt
cttgtcctagtgtggagacacagactggtatccccatgtagccattagtg
ctgctcttgtgggagctgggcaaggtgaagactggattcctgacgctcag
gatcatgctttagcagcgattttagggctttgagagacttgtccttgttc
ctctggattacgaagatggtcttcgatcaggaaagggaagtggacatctg
ggttttgtgtatgttagaatgtcaatagactatccatctgagaatttgat
tgaagtcccaaatctcagattatggaataaatactcaaagacaagatgca
attatatccagtgccatcttgccaaatcagatcataaatctggtttgact
actagtgacctttctcacatgcaatttatgaaaaaaaattgacagaattg
tttttttttttttcttggaagaaatccatatggacagacaattctggatt
tctgtcaggctgttcccaacagctcttccctcctccactaagctgaagcc
cctttgcaggccctcatagagattggcttctcccttcatctggaacatga
acagagaggtcagaggtcttgggaatgtttatgtattcctaggagttcgc
actagaattgtcacttattgaatgtggggggacagctcctgtaatcctgg
cacttggttgttgttatagtcaaagcctggtctcttgcaggcctagcaag
ctaggctctatcactgcctttgttacttttctattgctgtgaagaagtga
aatgtccaagtcaagttataattaattttgcttatggtttcagaaaggtt
ggagtccatgattttggctatcagcagccatgacggctagagcacctgag
agcttacatcttttttctgcaattagggaaggaggggaggcagagagggg
aagggggggtggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_74360890_74362071
seq2: B6Ng01-225C11.b_46_1225 (reverse)

seq1  TTCTTTCTGGGACATTGGCT-GAGGA-GGAAGGTCAGCTGGGT-GCTTTT  47
      |||||||   ||||||| || ||||| |||| |||||||||||   ||||
seq2  TTCTTTC---GACATTGACTGGAGGAGGGAATGTCAGCTGGGTCTTTTTT  47

seq1  TCTGCCTTTCTAAGCTAGC-AGGCTC--TCACCAC-AGCATCTGGATCCT  93
      |||| |||||| ||||||| ||||||  ||||||| |||||||| |||||
seq2  TCTG-CTTTCT-AGCTAGCAAGGCTCTTTCACCACAAGCATCTGAATCCT  95

seq1  GGGTATTCATTGGTAACTCAATTTTATTAAAAAACAATAGGTGAGGGTCG  143
       ||||||||||||| ||||||||||||| |||||||||| |||| |||||
seq2  -GGTATTCATTGGTTACTCAATTTTATT-AAAAACAATA-GTGA-GGTCG  141

seq1  GGACAAAGCTTCAA-TATACAGACCTGGCTACATTAGAATTTTCTTGGTA  192
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GGACAAAGCTTCAATTATACAGACCTGGCTACATTAGAATTTTCTT-GTA  190

seq1  GACCAGGCTG-TTCTCAAACTCACAGACATCTGCC-TGCTTCTGCCTCCT  240
      || ||||||| |||||||||||||||||||||||| |||||||| |||||
seq2  GA-CAGGCTGTTTCTCAAACTCACAGACATCTGCCTTGCTTCTG-CTCCT  238

seq1  AAGTGCTGGGATTAAGTTTCTGTGACACCAAGCCCAGCATGGTTCATCAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAGTTTCTGTGACACCAAGCCCAGCATGGTTCATCAA  288

seq1  TTCTTATATTCTTGCTTGTGGAAAAAAAATGAATCATATCTTTTGAATGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATTCTTGCTTGTGGAAAAAAAATGAATCATATCTTTTGAATGT  338

seq1  CTCTCCTGATTTTCTCTTCCCCACTTCTGGAACTTCTTTTCTTCTCTCAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGATTTTCTCTTCCCCACTTCTGGAACTTCTTTTCTTCTCTCAT  388

seq1  TCTGTTCTCCATGTACTTTCCTAATTTTTACTTCTTTATTCACGCTGCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCCATGTACTTTCCTAATTTTTACTTCTTTATTCACGCTGCCT  438

seq1  TCTAGATTATTCCTTCTAGCTTTCTAACATCTTGTCTGGCTATGTCCAAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTATTCCTTCTAGCTTTCTAACATCTTGTCTGGCTATGTCCAAC  488

seq1  CAGCCAGTTCACCTTGTTATCAAGGTTTTAAGTCCAGCAATCATTTTTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTTCACCTTGTTATCAAGGTTTTAAGTCCAGCAATCATTTTTTT  538

seq1  TCTAGGACATAGATTGGAATTATTTTTCTTTTCAAAGCAGTTGGCTCTTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATAGATTGGAATTATTTTTCTTTTCAAAGCAGTTGGCTCTTA  588

seq1  CTTTAAGATTTTTAGTTCTTTCCCCAGTCCTTATAATTTTTAAGTTTATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGATTTTTAGTTCTTTCCCCAGTCCTTATAATTTTTAAGTTTATT  638

seq1  TATTTTATAGCTCACTTAGGATCAATCTATTTGATAATATTTACTGGAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAGCTCACTTAGGATCAATCTATTTGATAATATTTACTGGAAA  688

seq1  TACACTACATTAAAGTCACTCCTCCTGGCACTAGGGATATAGCAATGAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTACATTAAAGTCACTCCTCCTGGCACTAGGGATATAGCAATGAAA  738

seq1  AATGGTTGAAGTGTTATATGTTTTTCAGTGAAAATGAACACATAAAATAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGAAGTGTTATATGTTTTTCAGTGAAAATGAACACATAAAATAT  788

seq1  AGATAATGTCAGATGGTTGTGTTGGTTACCAATGCTGGGAGGAAATGCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGTCAGATGGTTGTGTTGGTTACCAATGCTGGGAGGAAATGCCA  838

seq1  CGAACAAGGCAGCTCATAGGAGCAATGGTTACCAATGGTTACCAATGCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAGGCAGCTCATAGGAGCAATGGTTACCAATGGTTACCAATGCTG  888

seq1  GGAGGAGATCCCACAAACAAGGCAGCTCATAGGAGCAATGGTTTACTTGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATCCCACAAACAAGGCAGCTCATAGGAGCAATGGTTTACTTGA  938

seq1  CTTATGCTTCCAGAGAGATAAGAGTATGTCATGGTGGGAAATGTGTCAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTTCCAGAGAGATAAGAGTATGTCATGGTGGGAAATGTGTCAGC  988

seq1  ATGTAGCAGATGCTGTGGCTGAAGCAGAAAGTCTAGAGCTCACATCTTGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGATGCTGTGGCTGAAGCAGAAAGTCTAGAGCTCACATCTTGA  1038

seq1  ACAGAAAGCAGAGGAAGCAAACTCCAAATGGTCCAAGTCTTTAAACCCAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGCAGAGGAAGCAAACTCCAAATGGTCCAAGTCTTTAAACCCAA  1088

seq1  AAACTCCAAACCTACCCTCACTGACAGACTTCTAGCAAGACCACACCTCC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAACCTACCCTCACTGACAGACTTCTAGCAAGACCACACCTCC  1138

seq1  TAATCTACCCAGGCAACTTTACCAACTGTGCACTAAGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACCCAGGCAACTTTACCAACTGTGCACTAAGAATTC  1180

seq1: chr14_74223291_74224297
seq2: B6Ng01-225C11.g_63_1077

seq1  GAATTCATATATGCATAGCCTCTGGTGACAGTCTGTGGAAGAGAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATGCATAGCCTCTGGTGACAGTCTGTGGAAGAGAGAGGCT  50

seq1  CCCTTCCAGCCTCTGGTGACAGTCTGTGGGAGAGAGAGACTCCCTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAGCCTCTGGTGACAGTCTGTGGGAGAGAGAGACTCCCTCCTGT  100

seq1  CTTGTCCTAGTGTGGAGACACAGACTGGTATCCCCATGTAGCCATTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTAGTGTGGAGACACAGACTGGTATCCCCATGTAGCCATTAGTG  150

seq1  CTGCTCTTGTGGGAGCTGGGCAAGGTGAAGACTGGATTCCTGACGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGTGGGAGCTGGGCAAGGTGAAGACTGGATTCCTGACGCTCAG  200

seq1  GATCATGCTTTAGCAGCGATTTTAGGGCTTTGAGAGACTTGTCCTTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGCTTTAGCAGCGATTTTAGGGCTTTGAGAGACTTGTCCTTGTTC  250

seq1  CTCTGGATTACGAAGATGGTCTTCGATCAGGAAAGGGAAGTGGACATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATTACGAAGATGGTCTTCGATCAGGAAAGGGAAGTGGACATCTG  300

seq1  GGTTTTGTGTATGTTAGAATGTCAATAGACTATCCATCTGAGAATTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGTATGTTAGAATGTCAATAGACTATCCATCTGAGAATTTGAT  350

seq1  TGAAGTCCCAAATCTCAGATTATGGAATAAATACTCAAAGACAAGATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCCAAATCTCAGATTATGGAATAAATACTCAAAGACAAGATGCA  400

seq1  ATTATATCCAGTGCCATCTTGCCAAATCAGATCATAAATCTGGTTTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCCAGTGCCATCTTGCCAAATCAGATCATAAATCTGGTTTGACT  450

seq1  ACTAGTGACCTTTCTCACATGCAATTTATGAAAAAAAATTGACAGAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGACCTTTCTCACATGCAATTTATGAAAAAAAATTGACAGAATTG  500

seq1  TTTTTTTTTTTTTCTTGGAAGAAATCCATATGGACAGACAATTCTGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCTTGGAAGAAATCCATATGGACAGACAATTCTGGATT  550

seq1  TCTGTCAGGCTGTTCCCAACAGCTCTTCCCTCCTCCACTAAGCTGAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGGCTGTTCCCAACAGCTCTTCCCTCCTCCACTAAGCTGAAGCC  600

seq1  CCTTTGCAGGCCCTCATAGAGATTGGCTTCTCCCTTCATCTGGAACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGGCCCTCATAGAGATTGGCTTCTCCCTTCATCTGGAACATGA  650

seq1  ACAGAGAGGTCAGAGGTCTTGGGAATGTTTATGTATTCCTAGGAGTTCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGTCAGAGGTCTTGGGAATGTTTATGTATTCCTAGGAGTTCGC  700

seq1  ACTAGAATTGTCACTTATTGAATGTGGGGGGACAGCTCCTGTAATCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATTGTCACTTATTGAATGTGGGGGGACAGCTCCTGTAATCCTGG  750

seq1  CACTTGGTTGTTGTTATAGTCAAAGCCTGGTCTCTTGCAGGCCTAGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTTGTTGTTATAGTCAAAGCCTGGTCTCTTGCAGGCCTAGCAAG  800

seq1  CTAGGCTCTATCACTGCCTTTGTTACTTTTCTATTGCTGTGAAGAAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCTATCACTGCCTTTGTTACTTTTCTATTGCTGTGAAGAAGTGA  850

seq1  AATGTCCAAGTCAAGTTATAATTAATTTTGCTTATGGTTTCAG-AAGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGTCCAAGTCAAGTTATAATTAATTTTGCTTATGGTTTCAGAAAGGTT  900

seq1  GGAGTCCATGATTTTGGCTATCAGCAGCCATGACGGCTAGAGCACCTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCATGATTTTGGCTATCAGCAGCCATGACGGCTAGAGCACCTGAG  950

seq1  AGCTTACATC-TTTTTCTGCAATTA-GGAAGGA-GGGAGGCAGAGAGG--  994
      |||||||||| |||||||||||||| ||||||| ||||||||||||||  
seq2  AGCTTACATCTTTTTTCTGCAATTAGGGAAGGAGGGGAGGCAGAGAGGGG  1000

seq1  --GAGGGGGTGGGGA  1007
        | |||||||||||
seq2  AAGGGGGGGTGGGGA  1015