BAC Information

Click to search

BAC

Clone NameB6Ng01-225I22
Chromosome14 (Build37)
Map Location 109,087,585 - 109,252,571
singlet/doubletdoublet
Overlap geneEG668761
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225I22.bB6Ng01-225I22.g
ACCGA039721GA039722
length8791,075
definitionB6Ng01-225I22.b B6Ng01-225I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,251,703 - 109,252,571)(109,087,585 - 109,088,663)
sequence
gaattctctgtctatcccagggagagatttggaaacctctgagtcagaac
caggttctttccacaagggaaatctgggggtaatttttttcaattctttt
ttttttttcctgtacatttgtcagtgggtggaatgatggcaattctgtct
gcaattctttagttcttcccttacccttagttttttttttttttttttta
tcagctgaatctagcccagccctaggaacattgctatttcagtgattttg
tttctttcaccttacaaatttctctttttccatttccctccctcttgata
gatctaattgcccatgttcttcctatctttggtgtttcactaattattag
gaaacctagaattacattccttagctcaaggaatcatacttagtgcaaaa
aaatcatgttggaatagaggctttcagttaggatcctatctgcttgtagt
caactttaatttctctattattgcagcagttagatcttcaatttagatca
attagtagcttctctcaaagtttcttgagttacattcttcacctaaagct
aagagagtcactgtcctgaactcctgggatcttcttttgttgttgttgtt
gttgttgttgctgttgctgctcctggtagttgtggtagtgtaatggtggt
ggtgcttaagatgggctagaccatctctgtccatagttgtactacagagt
tagtgtctgtaattgagtaaggggagcccaatggtttctagacactatgg
tggagctcctgttgtaattacatcttcaagtcatgaacttctaatgttaa
ttttggacaaatggaacagttttctttaaaaatctgcccccatcccaaaa
tataggggatgcccgtttgtctattggtt
gaattcagctatgacacaggtatttttctctcctgttacctgctctattt
cttttctatattggctcctttttccacagaaacttccaagagcaggaaat
tcccagacataaaatattctgaccatgagcttcattaggacatagaactt
ccaacagcaattaggaatgaaaggaagggatgcaacgaatctatatttct
ttgtctaacaagtgggcagacaatatgtcatggttcaaatccttcaacta
gatagcagatatgtagtgaatagaggtcatttccttaaaaagaatgccaa
tagtttacaataacaaagagattcagtgcttgcagatcaaagtatcatcc
actgcacaaagtttcatgaattctcaatgtgcagaatggaaaacagatca
atgaagccatccagtttgtagcagtgatggaaagaaacaagtgattatag
aaattgcttgaaataagaaaagcaatgtacatgtatcgtgtcagatgcct
aaattgtctttagaaattgatttaagtgttgaaggaaattggggtaattg
agaagtcaaatttttaacacttcaaacttcaggacactaagggttttcta
tttgaagtacagtatgtaatgagaaggtgttttgtttgtttgtttgtctc
tttgtttctttgtttctttcttttttctgtctgccttttcttttattttt
tcctttgagggggtgggactccactaggttagcattagctttaggtaatg
attataggaatgactgcagagaaagcaaatgtaatttagacaatctaatg
ggctttgttccatgtctttaccaaaatgagtttcattagatttaccttcg
attacctttacttgtgcctttagtttttactctgtgaactactgttccaa
tgggggcccttttaagaagagtagactcttacatttacataactaatttt
tttctagacattacgttgaagtttccccgctctatcagttgtctatttat
tctgtcaaacagcccccaggtgtatattctttttagtgctagagaggtgt
cttaggacttggagcaggtaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109251703_109252571
seq2: B6Ng01-225I22.b_43_920 (reverse)

seq1  ACCAATAGAC-CACTGGCAT-CCCTATATTTT-GGAT-GGGGCAGA-TTT  45
      ||||||||||  || ||||| ||||||||||| |||| |||||||| |||
seq2  ACCAATAGACAAACGGGCATCCCCTATATTTTGGGATGGGGGCAGATTTT  50

seq1  TAGAGAAAACTGTTCCATTTGTCCATATTAACCATTAGAAGTTCATGACT  95
      || |||||||||||||||||||||| | | | ||||||||||||||||||
seq2  TAAAGAAAACTGTTCCATTTGTCCAAAATTAACATTAGAAGTTCATGACT  100

seq1  TGAAGATGT-AGTACAACAGGAGCTCCACCATAGTGTCTAGATACCATTG  144
      ||||||||| | |||||||||||||||||||||||||||||| |||||||
seq2  TGAAGATGTAATTACAACAGGAGCTCCACCATAGTGTCTAGAAACCATTG  150

seq1  GGCTCCCCTTACTC-ACTACAGACACTAACTCTGTAGTAC-ACTATGGAC  192
      |||||||||||||| | ||||||||||||||||||||||| |||||||||
seq2  GGCTCCCCTTACTCAATTACAGACACTAACTCTGTAGTACAACTATGGAC  200

seq1  AGAGATGGTCTAGCCCATCTTAAGCACCACCACCATTACACTACCACAAC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGTCTAGCCCATCTTAAGCACCACCACCATTACACTACCACAAC  250

seq1  TACCAGGAGCAGCAACAGCAACAACAACAACAACAACAACAAAAGAAGAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAGCAGCAACAGCAACAACAACAACAACAACAACAAAAGAAGAT  300

seq1  CCCAGGAGTTCAGGACAGTGACTCTCTTAGCTTTAGGTGAAGAATGTAAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTTCAGGACAGTGACTCTCTTAGCTTTAGGTGAAGAATGTAAC  350

seq1  TCAAGAAACTTTGAGAGAAGCTACTAATTGATCTAAATTGAAGATCTAAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAACTTTGAGAGAAGCTACTAATTGATCTAAATTGAAGATCTAAC  400

seq1  TGCTGCAATAATAGAGAAATTAAAGTTGACTACAAGCAGATAGGATCCTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAATAATAGAGAAATTAAAGTTGACTACAAGCAGATAGGATCCTA  450

seq1  ACTGAAAGCCTCTATTCCAACATGATTTTTTTGCACTAAGTATGATTCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGCCTCTATTCCAACATGATTTTTTTGCACTAAGTATGATTCCT  500

seq1  TGAGCTAAGGAATGTAATTCTAGGTTTCCTAATAATTAGTGAAACACCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAGGAATGTAATTCTAGGTTTCCTAATAATTAGTGAAACACCAA  550

seq1  AGATAGGAAGAACATGGGCAATTAGATCTATCAAGAGGGAGGGAAATGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAAGAACATGGGCAATTAGATCTATCAAGAGGGAGGGAAATGGA  600

seq1  AAAAGAGAAATTTGTAAGGTGAAAGAAACAAAATCACTGAAATAGCAATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAATTTGTAAGGTGAAAGAAACAAAATCACTGAAATAGCAATG  650

seq1  TTCCTAGGGCTGGGCTAGATTCAGCTGAT-AAAAAAAAAAAAAAAAAACT  691
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCTAGGGCTGGGCTAGATTCAGCTGATAAAAAAAAAAAAAAAAAAACT  700

seq1  AAGGGTAAGGGAAGAACTAAAGAATTGCAGACAGAATTGCCATCATTCCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAGGGAAGAACTAAAGAATTGCAGACAGAATTGCCATCATTCCA  750

seq1  CCCACTGACAAATGTACAGGAAAAAAAAAAAAGAATTGAAAAAAATTACC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGACAAATGTACAGGAAAAAAAAAAAAGAATTGAAAAAAATTACC  800

seq1  CCCAGATTTCCCTTGTGGAAAGAACCTGGTTCTGACTCAGAGGTTTCCAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTTCCCTTGTGGAAAGAACCTGGTTCTGACTCAGAGGTTTCCAA  850

seq1  ATCTCTCCCTGGGATAGACAGAGAATTC  869
      ||||||||||||||||||||||||||||
seq2  ATCTCTCCCTGGGATAGACAGAGAATTC  878

seq1: chr14_109087585_109088663
seq2: B6Ng01-225I22.g_67_1141

seq1  GAATTCAGCTATGACACAGGTATTTTTCTCTCCTGTTACCTGCTCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTATGACACAGGTATTTTTCTCTCCTGTTACCTGCTCTATTT  50

seq1  CTTTTCTATATTGGCTCCTTTTTCCACAGAAACTTCCAAGAGCAGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATATTGGCTCCTTTTTCCACAGAAACTTCCAAGAGCAGGAAAT  100

seq1  TCCCAGACATAAAATATTCTGACCATGAGCTTCATTAGGACATAGAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACATAAAATATTCTGACCATGAGCTTCATTAGGACATAGAACTT  150

seq1  CCAACAGCAATTAGGAATGAAAGGAAGGGATGCAACGAATCTATATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCAATTAGGAATGAAAGGAAGGGATGCAACGAATCTATATTTCT  200

seq1  TTGTCTAACAAGTGGGCAGACAATATGTCATGGTTCAAATCCTTCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAACAAGTGGGCAGACAATATGTCATGGTTCAAATCCTTCAACTA  250

seq1  GATAGCAGATATGTAGTGAATAGAGGTCATTTCCTTAAAAAGAATGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGATATGTAGTGAATAGAGGTCATTTCCTTAAAAAGAATGCCAA  300

seq1  TAGTTTACAATAACAAAGAGATTCAGTGCTTGCAGATCAAAGTATCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACAATAACAAAGAGATTCAGTGCTTGCAGATCAAAGTATCATCC  350

seq1  ACTGCACAAAGTTTCATGAATTCTCAATGTGCAGAATGGAAAACAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAAAGTTTCATGAATTCTCAATGTGCAGAATGGAAAACAGATCA  400

seq1  ATGAAGCCATCCAGTTTGTAGCAGTGATGGAAAGAAACAAGTGATTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCATCCAGTTTGTAGCAGTGATGGAAAGAAACAAGTGATTATAG  450

seq1  AAATTGCTTGAAATAAGAAAAGCAATGTACATGTATCGTGTCAGATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTTGAAATAAGAAAAGCAATGTACATGTATCGTGTCAGATGCCT  500

seq1  AAATTGTCTTTAGAAATTGATTTAAGTGTTGAAGGAAATTGGGGTAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTTTAGAAATTGATTTAAGTGTTGAAGGAAATTGGGGTAATTG  550

seq1  AGAAGTCAAATTTTTAACACTTCAAACTTCAGGACACTAAGGGTTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCAAATTTTTAACACTTCAAACTTCAGGACACTAAGGGTTTTCTA  600

seq1  TTTGAAGTACAGTATGTAATGAGAAGGTGTTTTGTTTGTTTGTTTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTACAGTATGTAATGAGAAGGTGTTTTGTTTGTTTGTTTGTCTC  650

seq1  TTTGTTTCTTTGTTTCTTTCTTTTTTCTGTCTGCCTTTTCTTTTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTGTTTCTTTCTTTTTTCTGTCTGCCTTTTCTTTTATTTTT  700

seq1  TCCTTTGAGGGGGTGGGACTCCACTAGGTTAGCATTAGCTTTAGGTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGGGGGTGGGACTCCACTAGGTTAGCATTAGCTTTAGGTAATG  750

seq1  ATTATAGGAATGACTGCAGAGAAAGCAAATGTAATTTAGACAATCTAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGAATGACTGCAGAGAAAGCAAATGTAATTTAGACAATCTAATG  800

seq1  GGCTTTGTTCCATGTCTTTACCAAAATGAGTTTCATTAGATTTACCTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTTCCATGTCTTTACCAAAATGAGTTTCATTAGATTTACCTTCG  850

seq1  ATTACCTTTACTTGTGCCTTTAGTTTTTACTCTGTGAACTACTGTTCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTTACTTGTGCCTTTAGTTTTTACTCTGTGAACTACTGTTCCAA  900

seq1  TGGGGG-CCTTTTAAGAAGAGTAGACTCTTACATTTACAATAACTAATTT  949
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGGGCCCTTTTAAGAAGAGTAGACTCTTACATTTAC-ATAACTAATTT  949

seq1  TTTTCTAGACATTACGTTGAAG-TTCCCCGCTCTATCAGTTGTTCTATTT  998
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TTTTCTAGACATTACGTTGAAGTTTCCCCGCTCTATCAGTTG-TCTATTT  998

seq1  A-TCTGTCAAACAGCCCCCAGGGTGTTATA-TCTTTTTAGTGCTAGAAGA  1046
      | |||||||||||||||||| |||| |||| ||||||||||||||| |||
seq2  ATTCTGTCAAACAGCCCCCA-GGTG-TATATTCTTTTTAGTGCTAG-AGA  1045

seq1  AGTGTCTTTAAGACTTGAAGGCAGGTAAAGAAA  1079
       ||||| ||| |||||| | |||||| ||||||
seq2  GGTGTC-TTAGGACTTGGA-GCAGGT-AAGAAA  1075