BAC Information

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BAC

Clone NameB6Ng01-225M01
Chromosome14 (Build37)
Map Location 87,848,770 - 87,970,708
singlet/doubletdoublet
Overlap geneTdrd3
Upstream geneLOC100043310, LOC100043311, Diap3, EG665324
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225M01.bB6Ng01-225M01.g
ACCGA039867GA039868
length1,0991,116
definitionB6Ng01-225M01.b B6Ng01-225M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,848,770 - 87,849,859)(87,969,597 - 87,970,708)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttcattatatatattgaatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatctta
tgattggtcgattctcgatcttacagcacaagccattgctgttctattca
ggaatttttcccctgtacccttatcttcgaggcttttccctactttctcc
tcaataagtttcagtgtctttggttttatgtggagatccttaatccactt
agatttgaccttagtacaaggagataggaatggatcagtttgtattcttc
tataggatatattttaaaattattatttgctcagctgttctaataaacct
tccaggcttagaatcttcatgggttggttcggtatggaaagcattttaat
attttaaatagggaaatgattttatgatgtattgttacctatcttttata
gttagtcttcaaatgtcatttttattttggtatcagagagaaacaattat
tgaaacaatattgaaagcattgttgttaatatctacttgtcagtgagtat
ataccatgtgtgttcttttttcactgggttacctcactcaggatattttc
tagttctatccatttccctaggaatttcataaattcattctttttaatag
ctgagtagtactccattgtataatgtaccacattttctgtatccattcct
ctgttgaggggaatctgggttttttccagcttctggctattataaataag
gctgctatgaacatagtggagcatgtgtccttcttaccggttggagcatc
ttctgggtaaatgcccaggagtggtatagctgagttctcaagaagttctc
tgttcccattttctggaaaaaccggttaaaccgagatttccgagagtggt
gtgtaccagctttcaatcccacccagcaatgggaaggagtgttcagtatc
tgcagcatgttgctgttcaccttgagtttggatctagcattctgacctg

gaattcaactctttctcattgtgggacagaacaaggacagccagccaggt
caggggctgagaagccaatgtgaacacacctcatagtatttcctctgtta
ttcatcccgtaagactgctttctcctctagagttccatatgattgaaaat
atgaaatatgtctgcttaaattcggtacctattaccttttattattcttt
aacctcaactgaaagatggtataaatagttttcttgctaacagactctga
gctgggatttgctgaaccagacatcatcaggaattaccttgggaaaacag
ttgatgaagcaaggaataaaaacaggaatgaagcctgaagaggtagccag
tagccaaagtgccctactacccatacaagaaaaccaggtatggaggtact
agcttataattctgggaagggagaggcagatggacaccccagagtcagtg
ggtagccagcctagtccaatctattagtcccaggttctaatgagaaaccc
tgtgttataaaacaaggtgggtagatcccaagaaacaactggaaactgac
ctttgactttcaaacaaacactagcagatacatacacacatatacacaca
cacatgcagagagagagacagagagagagagacagagacagagagagaga
gagaaaataacttaagtggacaaagagaaagatcaacttgcaaaagccat
caatagcattagacatctctattggtctagaataccccgtcagagttgtt
ccagctaggtagagatggccatcctaggtactggatgtggccatcttcca
aaaaagaaagttccttttgatctgaggcagccttgggcaagttgggtcat
caaccctagggattggctgaacactaagcctgtctgctgacaacccccgg
acaccaagtccctacttgagttttatgtagaaagtgcacctacctaagcc
tatcacagacatttacctgcccttttggacaaattaaggtcagagaaacc
tttatttcacaggatatacttgtcttaaacaattctcccgatcccttgcc
cttggggagtttaagttctagtaagcagtcagctcattatcatgatgaat
gatgtgagagccaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_87848770_87849859
seq2: B6Ng01-225M01.b_43_1141

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCTACCTTCTTGAGTTCATTATATATATTGAATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCTACCTTCTTGAGTTCATTATATATATTGAATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATCTTA  200

seq1  TGATTGGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCA  250

seq1  GGAATTTTTCCCCTGTACCCTTATCTTCGAGGCTTTTCCCTACTTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTTCCCCTGTACCCTTATCTTCGAGGCTTTTCCCTACTTTCTCC  300

seq1  TCAATAAGTTTCAGTGTCTTTGGTTTTATGTGGAGATCCTTAATCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGTTTCAGTGTCTTTGGTTTTATGTGGAGATCCTTAATCCACTT  350

seq1  AGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAGTTTGTATTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAGTTTGTATTCTTC  400

seq1  TATAGGATATATTTTAAAATTATTATTTGCTCAGCTGTTCTAATAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATATATTTTAAAATTATTATTTGCTCAGCTGTTCTAATAAACCT  450

seq1  TCCAGGCTTAGAATCTTCATGGGTTGGTTCGGTATGGAAAGCATTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTAGAATCTTCATGGGTTGGTTCGGTATGGAAAGCATTTTAAT  500

seq1  ATTTTAAATAGGGAAATGATTTTATGATGTATTGTTACCTATCTTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATAGGGAAATGATTTTATGATGTATTGTTACCTATCTTTTATA  550

seq1  GTTAGTCTTCAAATGTCATTTTTATTTTGGTATCAGAGAGAAACAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTTCAAATGTCATTTTTATTTTGGTATCAGAGAGAAACAATTAT  600

seq1  TGAAACAATATTGAAAGCATTGTTGTTAATATCTACTTGTCAGTGAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAATATTGAAAGCATTGTTGTTAATATCTACTTGTCAGTGAGTAT  650

seq1  ATACCATGTGTGTTCTTTTTTCACTGGGTTACCTCACTCAGGATATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGTGTGTTCTTTTTTCACTGGGTTACCTCACTCAGGATATTTTC  700

seq1  TAGTTCTATCCATTTCCCTAGGAATTTCATAAATTCATTCTTTTTAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTATCCATTTCCCTAGGAATTTCATAAATTCATTCTTTTTAATAG  750

seq1  CTGAGTAGTACTCCATTGTATAATGTACCACATTTTCTGTATCCATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGTACTCCATTGTATAATGTACCACATTTTCTGTATCCATTCCT  800

seq1  CTGTTGAGGGGAATCTGGGTTTTTTCCAGCTTCTGGCTATTATAAATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGGGGAATCTGGGTTTTTTCCAGCTTCTGGCTATTATAAATAAG  850

seq1  GCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGAGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGAGCATC  900

seq1  TTCTGGGTAAATGCCCAGGAGTGGTATAGCTGAGTCCTCAGGAAGTACTC  950
      ||||||||||||||||||||||||||||||||||| |||| ||||| |||
seq2  TTCTGGGTAAATGCCCAGGAGTGGTATAGCTGAGTTCTCAAGAAGTTCTC  950

seq1  TG-TCCAATTTTCT-GAAAAACC-GCTAAAC--TGATTTCC-AGAGTGGT  994
      || ||| ||||||| |||||||| | |||||   ||||||| ||||||||
seq2  TGTTCCCATTTTCTGGAAAAACCGGTTAAACCGAGATTTCCGAGAGTGGT  1000

seq1  -TGTACCAGCTTTCAATCCCA-CCAGCAATGG--AGGAGTGTTCCAGTAT  1040
       |||||||||||||||||||| ||||||||||  ||||||||| ||||||
seq2  GTGTACCAGCTTTCAATCCCACCCAGCAATGGGAAGGAGTGTT-CAGTAT  1049

seq1  CTGCAGCATG-TGCTG-TCACC-TGAGTTTTTGATCTTAGCCATTCTGAC  1087
      |||||||||| ||||| ||||| |||| ||| |||| ||| |||||||||
seq2  CTGCAGCATGTTGCTGTTCACCTTGAG-TTTGGATC-TAG-CATTCTGAC  1096

seq1  CTG  1090
      |||
seq2  CTG  1099


seq1: chr14_87969597_87970708
seq2: B6Ng01-225M01.g_64_1179 (reverse)

seq1  GTTTTGCTCTTCACATCA-TCATCATGATTTATGAGCTGACTTGCCTACT  49
      |||| |||| |||||||| ||||||||| | |||||||||| ||| ||||
seq2  GTTTGGCTC-TCACATCATTCATCATGA-TAATGAGCTGAC-TGCTTACT  47

seq1  AGACTTTAAACTCCCCAA-GGCCAGGGATCGGGAGAATTGTTTAAGAC-A  97
      |||  ||||||||||||| ||| ||||||||||||||||||||||||| |
seq2  AGAACTTAAACTCCCCAAGGGCAAGGGATCGGGAGAATTGTTTAAGACAA  97

seq1  GTATATCCTGTGAAAT-AAGGTTTCTCTGACCTTATTTTGTCC-AAAGGG  145
      |||||||||||||||| |||||||||||||||||| ||||||| ||||||
seq2  GTATATCCTGTGAAATAAAGGTTTCTCTGACCTTAATTTGTCCAAAAGGG  147

seq1  CAGGT-AATGTCTGTGATAGGCTTTAGGTAGGTGCACCTTCTACAT-AAA  193
      ||||| |||||||||||||||| |||||||||||||| |||||||| |||
seq2  CAGGTAAATGTCTGTGATAGGC-TTAGGTAGGTGCACTTTCTACATAAAA  196

seq1  CTCAAGTAGGGACTTGGTGTCCGGGGGTTGTCAGCAGACAGGCTTAGTGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTAGGGACTTGGTGTCCGGGGGTTGTCAGCAGACAGGCTTAGTGT  246

seq1  TCAGCCAATCCCTAGGGTTGATGACCCAACTTGCCCAAGGCTGCCTCAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAATCCCTAGGGTTGATGACCCAACTTGCCCAAGGCTGCCTCAGA  296

seq1  TCAAAAGGAACTTTC-TTTTTGGAAGATGGCCACATCCAGTACCTAGGAT  342
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGAACTTTCTTTTTTGGAAGATGGCCACATCCAGTACCTAGGAT  346

seq1  GGCCATCTCTACCTAGCTGGAACAACTCTGACGGGGTATTCTAGACCAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTCTACCTAGCTGGAACAACTCTGACGGGGTATTCTAGACCAAT  396

seq1  AGAGATGTCTAATGCTATTGATGGCTTTTGCAAGTTGATCTTTCTCTTTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCTAATGCTATTGATGGCTTTTGCAAGTTGATCTTTCTCTTTG  446

seq1  TCCACTTAAGTTATTTTCTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAAGTTATTTTCTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTC  496

seq1  TGTCTCTCTCTCTGCATGTGTGTGTGTATATGTGTGTATGTATCTGCTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCTGCATGTGTGTGTGTATATGTGTGTATGTATCTGCTAG  546

seq1  TGTTTGTTTGAAAGTCAAAGGTCAGTTTCCAGTTGTTTCTTGGGATCTAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGAAAGTCAAAGGTCAGTTTCCAGTTGTTTCTTGGGATCTAC  596

seq1  CCACCTTGTTTTATAACACAGGGTTTCTCATTAGAACCTGGGACTAATAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGTTTTATAACACAGGGTTTCTCATTAGAACCTGGGACTAATAG  646

seq1  ATTGGACTAGGCTGGCTACCCACTGACTCTGGGGTGTCCATCTGCCTCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTAGGCTGGCTACCCACTGACTCTGGGGTGTCCATCTGCCTCTC  696

seq1  CCTTCCCAGAATTATAAGCTAGTACCTCCATACCTGGTTTTCTTGTATGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGAATTATAAGCTAGTACCTCCATACCTGGTTTTCTTGTATGG  746

seq1  GTAGTAGGGCACTTTGGCTACTGGCTACCTCTTCAGGCTTCATTCCTGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGGGCACTTTGGCTACTGGCTACCTCTTCAGGCTTCATTCCTGTT  796

seq1  TTTATTCCTTGCTTCATCAACTGTTTTCCCAAGGTAATTCCTGATGATGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTGCTTCATCAACTGTTTTCCCAAGGTAATTCCTGATGATGT  846

seq1  CTGGTTCAGCAAATCCCAGCTCAGAGTCTGTTAGCAAGAAAACTATTTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAGCAAATCCCAGCTCAGAGTCTGTTAGCAAGAAAACTATTTAT  896

seq1  ACCATCTTTCAGTTGAGGTTAAAGAATAATAAAAGGTAATAGGTACCGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTCAGTTGAGGTTAAAGAATAATAAAAGGTAATAGGTACCGAA  946

seq1  TTTAAGCAGACATATTTCATATTTTCAATCATATGGAACTCTAGAGGAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAGACATATTTCATATTTTCAATCATATGGAACTCTAGAGGAGA  996

seq1  AAGCAGTCTTACGGGATGAATAACAGAGGAAATACTATGAGGTGTGTTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCTTACGGGATGAATAACAGAGGAAATACTATGAGGTGTGTTCA  1046

seq1  CATTGGCTTCTCAGCCCCTGACCTGGCTGGCTGTCCTTGTTCTGTCCCAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTTCTCAGCCCCTGACCTGGCTGGCTGTCCTTGTTCTGTCCCAC  1096

seq1  AATGAGAAAGAGTTGAATTC  1112
      ||||||||||||||||||||
seq2  AATGAGAAAGAGTTGAATTC  1116


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