BAC Information

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BAC

Clone NameB6Ng01-226C24
Chromosome14 (Build37)12 (Build37)
Map Location 108,403,184 - 108,404,320118,640,901 - 118,641,222
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226C24.bB6Ng01-226C24.g
ACCGA040192GA040193
length1,1211,008
definitionB6Ng01-226C24.b B6Ng01-226C24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,403,184 - 108,404,320)(118,640,901 - 118,641,222)
sequence
gaattcaggtgcctcagtacctgtgagatcttatgtacacactttatgtt
gatttagagcacttgtttgctttgtgtcttctggctcttactatctttcc
ttccctcttccatggggttccctgagtcctgcagggaggagtattgtcgg
gatgatgtcgctttggagggtgtaggccacttattcctcgaattggcaga
gaattacgagggtaccacaggtctactcaagtttatacaggggccatgaa
ctctttcatgatatgcagaagccatctcaagatgagtagtggcaaaatct
aggacgccacggaagctgccttggtcctggagaagaactgaaccaagccc
ttttggatcttcattctctgggttctgcccgcacaaaacctcatctctgt
gacttcttggaaaactacttcctgcattgaagtaaatcttgctgtgaatt
gaagtgttcaagctgatgaagaacatggaaaaccacctgaccaacctatg
taagctgggtgagccacagccaacacagactagtctgcctgagccaacta
tgaacaagtaactctttgagggcctcattttgcggaatgactaaggtacc
tcctcaccttcaaatgggctctttctgttctgcaccagccatgtccagga
cctccaactgaatgaacatctaaagccacttggcagctgtgtaaaagctc
tggagcccttttcatctcttggaccagataaaagtaaaggtttttttaga
acagaaaaacaaatcaaaacaaaataaatcaaatacaaaaacaaaatctt
ggatcgtcttccttgagacttttctttgataagtatgttgtgtccatcct
tatctcttctaatgagatatctttttgttgaagtctattttctcaagata
ctgaaatggatatgcagcatctgcttctcagatccaatgaagaatatttt
ttccatcttttcatcctggtgatgtctagcctgatgtgttcctggatgca
ctctgcctttgcatcatttatcaggcattgagatcattgatattgggaga
atgtctaggagcagtttgtagtcttgtagctatgatttggttgttgtcgt
gtggtgtttgtgctcctctct

gaattctttgttcagtcctgagccccatttttaatgggattatttgattt
tctggaggccaccttcttgagttcttcatatatattggatattagtcccc
tatctgattttggataggtaaagattctttcgcaatctgttggtggtctt
tttgtcttatttcggtatcttttgcctttcagaagctttgcagtttaatc
atgtagaagaatgcgaatcgatccattcctatctccttgtactaaggtca
aatctaagtggatcaaggaactttacataaaactagagacactgaaactt
ttagaggagaaagtggggaaaagccttgaagatatgtgcacaggggaaaa
attcctgaatagaacagcaatggcttgcgctgtaagttcgagaattgaca
aatgtggttttttgttttgttttgttttgttttttggttttttttttttc
aaattgctgaagattcaggacaggtgtggtgccacacacctttaatctca
gctctagggaggcagaggcaggcgtatttctaagtttgaggccagcctgg
tctacaaagtgagttccagaacagccagggctatacagagaaatcctgac
tcgaaaaaaaaaaaaattgctgaggattcattgtttaaaaatgaatttaa
catgagaaaaacacaaaaccattattttgaaaataccttaagaatgctca
atgattattaagaagtatattattaagaatgattattaagaatagcattt
gaaaacaaaaggtctgatctattgaaaacataatatgttattcatttaaa
gagacatagggggcctagcaaacacagaagtggatgctcacagtcagcta
atggatggatcacagggctcccaatagaggagctagagaaagaacccaag
gagctaaagggatctgcaaccctatagtgacacattatgaactacagtac
ccggagctctgactctagctgcatatgtatcaaagatgctagtcgcatca
ctgtaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108403184_108404320
seq2: B6Ng01-226C24.b_43_1163

seq1  GAATTCAGGTGCCTCAGTACCTGTGAGATCTTATGTACACACTTTATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGCCTCAGTACCTGTGAGATCTTATGTACACACTTTATGTT  50

seq1  GATTTAGAGCACTTGTTTGCTTTGTGTCTTCTGGCTCTTACTATCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGAGCACTTGTTTGCTTTGTGTCTTCTGGCTCTTACTATCTTTCC  100

seq1  TTCCCTCTTCCATGGGGTTCCCTGAGTCCTGCAGGGAGGAGTATTGTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTCCATGGGGTTCCCTGAGTCCTGCAGGGAGGAGTATTGTCGG  150

seq1  GATGATGTCGCTTTGGAGGGTGTAGGCCACTTATTCCTCGAATTGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTCGCTTTGGAGGGTGTAGGCCACTTATTCCTCGAATTGGCAGA  200

seq1  GAATTACGAGGGTACCACAGGTCTACTCAAGTTTATACAGGGGCCATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACGAGGGTACCACAGGTCTACTCAAGTTTATACAGGGGCCATGAA  250

seq1  CTCTTTCATGATATGCAGAAGCCATCTCAAGATGAGTAGTGGCAAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCATGATATGCAGAAGCCATCTCAAGATGAGTAGTGGCAAAATCT  300

seq1  AGGACGCCACGGAAGCTGCCTTGGTCCTGGAGAAGAACTGAACCAAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGCCACGGAAGCTGCCTTGGTCCTGGAGAAGAACTGAACCAAGCCC  350

seq1  TTTTGGATCTTCATTCTCTGGGTTCTGCCCGCACAAAACCTCATCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATCTTCATTCTCTGGGTTCTGCCCGCACAAAACCTCATCTCTGT  400

seq1  GACTTCTTGGAAAACTACTTCCTGCATTGAAGTAAATCTTGCTGTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTGGAAAACTACTTCCTGCATTGAAGTAAATCTTGCTGTGAATT  450

seq1  GAAGTGTTCAAGCTGATGAAGAACATGGAAAACCACCTGACCAACCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTCAAGCTGATGAAGAACATGGAAAACCACCTGACCAACCTATG  500

seq1  TAAGCTGGGTGAGCCACAGCCAACACAGACTAGTCTGCCTGAGCCAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGGTGAGCCACAGCCAACACAGACTAGTCTGCCTGAGCCAACTA  550

seq1  TGAACAAGTAACTCTTTGAGGGCCTCATTTTGCGGAATGACTAAGGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGTAACTCTTTGAGGGCCTCATTTTGCGGAATGACTAAGGTACC  600

seq1  TCCTCACCTTCAAATGGGCTCTTTCTGTTCTGCACCAGCCATGTCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTTCAAATGGGCTCTTTCTGTTCTGCACCAGCCATGTCCAGGA  650

seq1  CCTCCAACTGAATGAACATCTAAAGCCACTTGGCAGCTGTGTAAAAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACTGAATGAACATCTAAAGCCACTTGGCAGCTGTGTAAAAGCTC  700

seq1  TGGAGCCCTTTTCATCTCTTGGACCAGATAAAAGTAAAGGTTTTTTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCTTTTCATCTCTTGGACCAGATAAAAGTAAAGGTTTTTTTAGA  750

seq1  ACAGAAAAACAAATCAAAACAAAATAAATCAAATACAAAAACAAAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAACAAATCAAAACAAAATAAATCAAATACAAAAACAAAATCTT  800

seq1  GGATCGTCTTCCTTGAGACTTTTCTTTGATAAGTATGTTGTGTCCATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGTCTTCCTTGAGACTTTTCTTTGATAAGTATGTTGTGTCCATCCT  850

seq1  TATCTCTTCTAATGAGATATCTTTTTGTTGAAGTCTATTTTCTCAAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCTAATGAGATATCTTTTTGTTGAAGTCTATTTTCTCAAGATA  900

seq1  CTGAAATGGATATGCAGCATCTGCTTCTCAGATCCAATGAAGAATA-TTT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGAAATGGATATGCAGCATCTGCTTCTCAGATCCAATGAAGAATATTTT  950

seq1  TTCCATCTTTTCATCCTGGGTGATGTCTAGCCTTGATGTGTTTCCTGGAT  999
      ||||||||||||||||| |||||||||||||| ||||||| |||||||||
seq2  TTCCATCTTTTCATCCT-GGTGATGTCTAGCC-TGATGTG-TTCCTGGAT  997

seq1  GCACTCTGCCTTTGCATCCATTTTATCAGGGAATTGAGATCATTGATATT  1049
      ||||||||||||||||||   ||||||| || ||||||||||||||||||
seq2  GCACTCTGCCTTTGCATC--ATTTATCA-GGCATTGAGATCATTGATATT  1044

seq1  GGGAGAAATGTCTAGGAGCAGGTTTTGTTAATTCTTGTTAGCTATTGATT  1099
      ||||| |||||||||||||||  |||||  | ||||| |||||| |||||
seq2  GGGAG-AATGTCTAGGAGCAG--TTTGT--AGTCTTG-TAGCTA-TGATT  1087

seq1  TGTTTGTTTGTCGTTGTGGTGGTTTGTGCTTCCTCTCT  1137
      || ||| |||||| |||||| |||||||| ||||||||
seq2  TGGTTG-TTGTCG-TGTGGT-GTTTGTGC-TCCTCTCT  1121


seq1: chr12_118640901_118641222
seq2: B6Ng01-226C24.g_688_1070

seq1  ATTCATTGTTTAAAAAAGATACAATTTAA---GAGAAGAAACAC---ACC  44
      |||||||||||||||| |    |||||||   ||||| ||||||   |||
seq2  ATTCATTGTTTAAAAATG----AATTTAACATGAGAA-AAACACAAAACC  45

seq1  ATT------------------GCATAC---------ACTAGCAAG-ATTT  66
      |||                  | || |         | ||  ||| || |
seq2  ATTATTTTGAAAATACCTTAAGAATGCTCAATGATTATTAAGAAGTATAT  95

seq1  TATTGA-----------AAGGA-CGCAGATGTA---------GCTG-TCT  94
      |||| |           ||| |  |||  || |          ||| |||
seq2  TATTAAGAATGATTATTAAGAATAGCATTTGAAAACAAAAGGTCTGATCT  145

seq1  CTTG---TGAGACTATG--------------------CCGGGGCCCAGCA  121
       |||     | | ||||                      |||||| ||||
seq2  ATTGAAAACATAATATGTTATTCATTTAAAGAGACATAGGGGGCCTAGCA  195

seq1  AACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTC  171
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTC  245

seq1  CCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAAC  221
      ||||| |||||||||||||||| | |||||||||||||||||||||||||
seq2  CCAATAGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAAC  295

seq1  CCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGA  271
      |||||| |||  || ||||||||| |||  ||||| |||||||||| |||
seq2  CCTATA-GTG--AC-ACATTATGAACTA--CAGTA-CCCGGAGCTC-TGA  337

seq1  CTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA  321
      |||||||||||||| |||| |||||||  |||||||  |||||||| |||
seq2  CTCTAGCTGCATATGTATC-AAAGATG--CTAGTCG--CATCACTGTAAA  382

seq1  G  322
      |
seq2  G  383


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