BAC Information

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BAC

Clone NameB6Ng01-226E10
Chromosome14 (Build37)
Map Location 112,024,619 - 112,177,052
singlet/doubletdoublet
Overlap geneSlitrk5
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226E10.bB6Ng01-226E10.g
ACCGA040258GA040259
length1,1701,153
definitionB6Ng01-226E10.b B6Ng01-226E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,024,619 - 112,025,799)(112,175,882 - 112,177,052)
sequence
gaattcagggacagattttgaaggcataaaaatctgccagaaatggtgaa
agaataaattaaagcaaagtggagggatatcaatcaaagatctctaagga
aaaagaaaatgagtatgggataccggcacttacaggtccttagaggacat
gttcaaaattggaagatgccagttaatgttgaaatctgaatcatgttgaa
aatgatgggtatattcacagtaccttttctcaagagaatccacttgtata
cgcatgcaattggtgaggactcaaactgccttcagagacaaagccttcag
cagaacttataagtcaagttcagtgttgggaatttagacagattggtagg
acagaatgagtagcttgagactctgtaatagtgtccattatgcttgctta
gaaattaaggacaaacaatagatatgacaggaaagaagaacaaggtaata
ttgtttttaaccataaatttacaacctggtaaatagcaactctatgctat
cattttagactagcttgattgtgttagactgtttagttacagtgaggtta
taaattaatttcacttatttcataagaaaaacatctccacaggaaacttc
atactttgaaagaatatttacattgatatccgacattggcttccaaaatt
taaatgatgttcttgatttctatatatggagcgttttggagaacagtgcc
ataactcagtgaagaaatatgtacagtctggagacgttcttctgttaggt
aaaactgacaaagaaaatgcaggacagaaaatcagtgttctaaatgcaca
tgagcatggtagtaacagaggggaggatacccagggtggcccagccctct
cagtggagaggtgggacaaagaatgtgaggaacatctgtgtgagggggga
ccatgagggggagtgattggaatgttaaatttataagtaaattaattaat
gggaaaaaaggatttgtatagctgcacatggaaggcacgggggggttggg
gagacatatctatggctctgagatgctgtcatatgagtttatagtcaatt
tatggaaaagtgtttgatttctgatatgattgaagttaaaagaattgcaa
tagtatgagatccagttagagaaggattgaatctaaaaataccactaacg
agaataggtggataggaaaa

gaattcccttgtccagcctagatatgagggcttttgccttgtcttatttt
attctgtttggtcctgctttgctgttgtatcttgggagaggaaatgaagg
ggctgtggatgcagaggagagatgcagatgtgctaggaggaggaggagag
agaagaaactgtggttgggatgtacttttgagaaaggaatctacgttcag
ttatttttttcattataaaagaatatttattctaatatgattatagattt
gtcaacaaatctgttatcttcatatcttatatcattcatgaatttgatag
aacgtaattggtgatgactaggcacgtggaaacagggctctggtgctgga
ggagagactggagacattagcagttctaagaaatggatgtttctcaccac
ctcacacacacttaagttagcccctgttttaaattgtgtctactcaatcc
tatttggattcagaacacagctcagttgctacattcctaaaaatatcttc
acgtatttcctaagcaatattacaagtgcattaaaagttcaattgtcatt
taaataaattttctacttacaaatttacagacatttttttgtaagcctga
actaataaagtgcttatctgcctcatggtaaaagctaacagattgcattt
aatagatggctatatttaacatatagcatgtctatgtctattgatgtgtt
gatgcattgcagtctgagtacagtaactggcatatgatacatgtgtagca
aatggcaatatttactatcttaaacaatactatacttatgagaggttgtc
attttcaaggcaaaagtaccaagaaaaaaattctgacagttcagccatga
tgcagatttgataacagagcagctacttaacaaatgtgaggaattctatg
ctttaatgtcttcttgcttcgttgtgtatttgaagctataaactaaatgg
ccctttctatctttgaatatctatgagttgtaaacataaaaaaaatctgt
gaaaattttcaaaacgccttgcacattggaaaagtactggccagaatagc
atatgtgctgtactaaagaattgctaaaatcagtttctggactgactttt
cctgaacttccgtaagattaaaaggtcattctgtgtaatttaaattatag
aag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112024619_112025799
seq2: B6Ng01-226E10.b_44_1213

seq1  GAATTCAGGGACAGATTTTGAAGGCATAAAAATCTGCCAGAAATGGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACAGATTTTGAAGGCATAAAAATCTGCCAGAAATGGTGAA  50

seq1  AGAATAAATTAAAGCAAAGTGGAGGGATATCAATCAAAGATCTCTAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATTAAAGCAAAGTGGAGGGATATCAATCAAAGATCTCTAAGGA  100

seq1  AAAAGAAAATGAGTATGGGATACCGGCACTTACAGGTCCTTAGAGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATGAGTATGGGATACCGGCACTTACAGGTCCTTAGAGGACAT  150

seq1  GTTCAAAATTGGAAGATGCCAGTTAATGTTGAAATCTGAATCATGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAATTGGAAGATGCCAGTTAATGTTGAAATCTGAATCATGTTGAA  200

seq1  AATGATGGGTATATTCACAGTACCTTTTCTCAAGAGAATCCACTTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGGTATATTCACAGTACCTTTTCTCAAGAGAATCCACTTGTATA  250

seq1  CGCATGCAATTGGTGAGGACTCAAACTGCCTTCAGAGACAAAGCCTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCAATTGGTGAGGACTCAAACTGCCTTCAGAGACAAAGCCTTCAG  300

seq1  CAGAACTTATAAGTCAAGTTCAGTGTTGGGAATTTAGACAGATTGGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTATAAGTCAAGTTCAGTGTTGGGAATTTAGACAGATTGGTAGG  350

seq1  ACAGAATGAGTAGCTTGAGACTCTGTAATAGTGTCCATTATGCTTGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGAGTAGCTTGAGACTCTGTAATAGTGTCCATTATGCTTGCTTA  400

seq1  GAAATTAAGGACAAACAATAGATATGACAGGAAAGAAGAACAAGGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGGACAAACAATAGATATGACAGGAAAGAAGAACAAGGTAATA  450

seq1  TTGTTTTTAACCATAAATTTACAACCTGGTAAATAGCAACTCTATGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAACCATAAATTTACAACCTGGTAAATAGCAACTCTATGCTAT  500

seq1  CATTTTAGACTAGCTTGATTGTGTTAGACTGTTTAGTTACAGTGAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGACTAGCTTGATTGTGTTAGACTGTTTAGTTACAGTGAGGTTA  550

seq1  TAAATTAATTTCACTTATTTCATAAGAAAAACATCTCCACAGGAAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATTTCACTTATTTCATAAGAAAAACATCTCCACAGGAAACTTC  600

seq1  ATACTTTGAAAGAATATTTACATTGATATCCGACATTGGCTTCCAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGAAAGAATATTTACATTGATATCCGACATTGGCTTCCAAAATT  650

seq1  TAAATGATGTTCTTGATTTCTATATATGGAGCGTTTTGGAGAACAGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATGTTCTTGATTTCTATATATGGAGCGTTTTGGAGAACAGTGCC  700

seq1  ATAACTCAGTGAAGAAATATGTACAGTCTGGAGACGTTCTTCTGTTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAGTGAAGAAATATGTACAGTCTGGAGACGTTCTTCTGTTAGGT  750

seq1  AAAACTGACAAAGAAAATGCAGGACAGAAAATCAGTGTTCTAAATGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGACAAAGAAAATGCAGGACAGAAAATCAGTGTTCTAAATGCACA  800

seq1  TGAGCATGGTAGTAACAGAGGGGAGGATACCCAGGGTGGCCCAGCCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGTAGTAACAGAGGGGAGGATACCCAGGGTGGCCCAGCCCTCT  850

seq1  CAGTGGAGAGGTGGGACAAAGAATGTGAGGAACATCTGTGTGAGGGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGAGGTGGGACAAAGAATGTGAGGAACATCTGTGTGAGGGGGGA  900

seq1  CCATGAGGGGGAGTGATTGGAATGTTAAATTTATAAGTAAATAAATTAAT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATGAGGGGGAGTGATTGGAATGTTAAATTTATAAGTAAATTAATTAAT  950

seq1  GGGAAAAAAGGATTTGTATAGCTGCACATGGAAGGCAC-GGGGGGTTGGG  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGAAAAAAGGATTTGTATAGCTGCACATGGAAGGCACGGGGGGGTTGGG  1000

seq1  GAGACAATATCTATGGCTCTGAGATGTTGTCATATGAAGTTTTATAGTCA  1049
      ||||| |||||||||||||||||||| ||||||||||   ||||||||||
seq2  GAGAC-ATATCTATGGCTCTGAGATGCTGTCATATGA--GTTTATAGTCA  1047

seq1  ATTTAATG-AGAGTGTTTTGAATTTCTG-TATGAATGAAGTTTAAAAAGA  1097
      |||||  | | |||||||   ||||||| ||||| |||||||  ||||||
seq2  ATTTATGGAAAAGTGTTT--GATTTCTGATATGATTGAAGTT--AAAAGA  1093

seq1  A-TGCAATTAAGTATGAGATCAAATTTAGAAGAAAGATTTTGATCTAAAA  1146
      | ||||||  |||||||||||  | |||| |||| || ||  ||||  ||
seq2  ATTGCAAT--AGTATGAGATC-CAGTTAG-AGAAGGA-TTGAATCT--AA  1136

seq1  AAATACAACTAAACGAGAAAAGGTGGATAGGAAAA  1181
      |||||| ||| |||||||| |||||||||||||||
seq2  AAATACCACT-AACGAGAATAGGTGGATAGGAAAA  1170


seq1: chr14_112175882_112177052
seq2: B6Ng01-226E10.g_66_1218 (reverse)

seq1  CTTCTATAATTTAAAATACAACCAGAATGACTTTTTAAATCTTATAGGAA  50
      ||||||||||||||| ||||  ||||||||| |||| |||||||  ||||
seq2  CTTCTATAATTTAAATTACA--CAGAATGACCTTTT-AATCTTA-CGGAA  46

seq1  GTTTTAAGAAAAAATTCAGTCAAGAAACTGATTTTAGCAAATCTTTAGTA  100
      |  || ||  |||| |||||| |||||||||||||||||| |||||||||
seq2  G--TTCAG-GAAAAGTCAGTCCAGAAACTGATTTTAGCAATTCTTTAGTA  93

seq1  CAGCAACATATGGCTAATTCTTGGGCCAAGTTACTTTTTCCAAATGTTGC  150
      |||| |||||| ||| |||||  |||||   |||||||  | |||| |||
seq2  CAGC-ACATAT-GCT-ATTCT--GGCCA--GTACTTTT--CCAATG-TGC  133

seq1  AAGGCCTTTTGAAAAATTTTCACAGA-TTTTTTTATGTTTACAACTCATA  199
      ||||| ||||| |||||||||||||| |||||||||||||||||||||||
seq2  AAGGCGTTTTG-AAAATTTTCACAGATTTTTTTTATGTTTACAACTCATA  182

seq1  GATAATTCAAAGATAGAAAAGGCCATTTAGTTTATAGCTTCAAATACACA  249
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAT-ATTCAAAGATAGAAAGGGCCATTTAGTTTATAGCTTCAAATACACA  231

seq1  ACGAAGCAAGAAGACATTAAAGCATAGAATTCCTCACATTTGTTAAGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCAAGAAGACATTAAAGCATAGAATTCCTCACATTTGTTAAGTAG  281

seq1  CTGCTCTGTTATCAAATCTGCATCATGGCTGAACTGTCAGAATTTTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTTATCAAATCTGCATCATGGCTGAACTGTCAGAATTTTTTTC  331

seq1  TTGGTACTTTTGCCTTGAAAATGACAACCTCTCATAAGTATAGTATTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTTTTGCCTTGAAAATGACAACCTCTCATAAGTATAGTATTGTT  381

seq1  TAAGATAGTAAATATTGCCATTTGCTACACATGTATCATATGCCAGTTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGTAAATATTGCCATTTGCTACACATGTATCATATGCCAGTTAC  431

seq1  TGTACTCAGACTGCAATGCATCAACACATCAATAGACATAGACATGCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAGACTGCAATGCATCAACACATCAATAGACATAGACATGCTAT  481

seq1  ATGTTAAATATAGCCATCTATTAAATGCAATCTGTTAGCTTTTACCATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATATAGCCATCTATTAAATGCAATCTGTTAGCTTTTACCATGA  531

seq1  GGCAGATAAGCACTTTATTAGTTCAGGCTTACAAAAAAATGTCTGTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATAAGCACTTTATTAGTTCAGGCTTACAAAAAAATGTCTGTAAAT  581

seq1  TTGTAAGTAGAAAATTTATTTAAATGACAATTGAACTTTTAATGCACTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTAGAAAATTTATTTAAATGACAATTGAACTTTTAATGCACTTG  631

seq1  TAATATTGCTTAGGAAATACGTGAAGATATTTTTAGGAATGTAGCAACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGCTTAGGAAATACGTGAAGATATTTTTAGGAATGTAGCAACTG  681

seq1  AGCTGTGTTCTGAATCCAAATAGGATTGAGTAGACACAATTTAAAACAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTCTGAATCCAAATAGGATTGAGTAGACACAATTTAAAACAGG  731

seq1  GGCTAACTTAAGTGTGTGTGAGGTGGTGAGAAACATCCATTTCTTAGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTTAAGTGTGTGTGAGGTGGTGAGAAACATCCATTTCTTAGAAC  781

seq1  TGCTAATGTCTCCAGTCTCTCCTCCAGCACCAGAGCCCTGTTTCCACGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGTCTCCAGTCTCTCCTCCAGCACCAGAGCCCTGTTTCCACGTG  831

seq1  CCTAGTCATCACCAATTACGTTCTATCAAATTCATGAATGATATAAGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCATCACCAATTACGTTCTATCAAATTCATGAATGATATAAGATA  881

seq1  TGAAGATAACAGATTTGTTGACAAATCTATAATCATATTAGAATAAATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAACAGATTTGTTGACAAATCTATAATCATATTAGAATAAATAT  931

seq1  TCTTTTATAATGAAAAAAATAACTGAACGTAGATTCCTTTCTCAAAAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATAATGAAAAAAATAACTGAACGTAGATTCCTTTCTCAAAAGTA  981

seq1  CATCCCAACCACAGTTTCTTCTCTCTCCTCCTCCTCCTAGCACATCTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAACCACAGTTTCTTCTCTCTCCTCCTCCTCCTAGCACATCTGCA  1031

seq1  TCTCTCCTCTGCATCCACAGCCCCTTCATTTCCTCTCCCAAGATACAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCTGCATCCACAGCCCCTTCATTTCCTCTCCCAAGATACAACA  1081

seq1  GCAAAGCAGGACCAAACAGAATAAAATAAGACAAGGCAAAAGCCCTCATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAGGACCAAACAGAATAAAATAAGACAAGGCAAAAGCCCTCATA  1131

seq1  TCTAGGCTGGACAAGGGAATTC  1171
      ||||||||||||||||||||||
seq2  TCTAGGCTGGACAAGGGAATTC  1153


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