BAC Information

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BAC

Clone NameB6Ng01-226I19
Chromosome14 (Build37)12 (Build37)
Map Location 66,644,693 - 66,644,898106,490,953 - 106,492,005
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo
Downstream geneAdam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226I19.bB6Ng01-226I19.g
ACCGA040463GA040464
length7151,059
definitionB6Ng01-226I19.b B6Ng01-226I19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,644,693 - 66,644,898)(106,490,953 - 106,492,005)
sequence
gaattccttgtatccacccttgccctcagcttcctgatgattgagttgct
gatgagtagatagatatgcatgctgaggactgatggttttttaatgtaaa
tgtttaaatctgtgattcttctataattgttacaagactactctttatga
taaataataaaataattgatcctttctctgcgacggcaaattgctacctt
gccagtaagagaaagtggttgagaaacccaccttgcccgctcacactttg
taaatctagaataagttagttatgactgtacatggaggctggcggtggtg
gcacacgcctttcattccagctctcgggaggcagaggcaggcagatttct
gagtttgaggccagcctggtctacagagtgagttccaggatagccaggat
taaaccctgtctcaggaaaaaaagaaaaaacaaaaacaaaaaaagaatga
atttacatgggttcttgggaataatttggttcctttagctgtagtatgta
atgttttttcatgtaacagttttggggaacatactgtttgtttgtttttt
cataatcattcactaaaagaaaaatagaatgtaatcacattgtaatttct
atattgcttgaaagattttgctgggatatataagctatgggagaagaaat
acagttgttggagcctgctcaaaagagtttgctccagccacacaaatatg
tatgtgtgtgtgtgt
gaattcacacagattaataaaaacaaaaccattgaactgtcagagctaaa
tacataaaagatgcaatttctaaaagaaaaaagaggcgtggctgaggaga
cgtgtgcgaatgcagcgtcttcctataagtgggctacaacggtggagcca
accttcacccctagtagggctcgcacctatggccaccacatctatactga
ggggtttcgatgtcaagcaattggcctaaccaactgtctgttcctttcaa
gctcagagggtgtgtgctaagaaggaagcagggtccttctgagtgatcca
tgaattccttcacacattccacagtcatttattgagtatctgtgacatgc
taggtgtaacacaggctctgttgatgcagaaaaggggacacaattgtcct
ggtcctgtgttcctgttagaaagttttacgtgggtgcgctgggaaaatgg
ctcagcaggtgtaccggaatgaggaaggacctgtgttcagatccccagaa
tttatgcaaaagcctggcagggtgctgcgcgtctgtgttcccagcactga
gggagagcctgggcaggaggatcctaggatgctggctggcctgccagtca
aacagaaaccgtgagttccaggttcagtgagaggagacgctcagtgtcca
tctctgaccttcgtatgcacatgcacaggagaccctatgcacctacacca
cacacagacaccacagttaaaagaagaaaaactgttctatgaagaatatc
cagctttgcagggggtcccgaacgaggcagagacattgatcttacaagcc
agtggtgactggatccaagtcttctctgcactttgggatgaacacagtcc
tagaggatatcacctgataaggatttactccgcagccctgggatgcctgt
gaccctggactcttggttgacttggtcttcctggctgtggtccagccaca
ggctatcaacaggggcaaatcagtatgggcccaacatgtactgcatggaa
tggccttcagaagctacttcattggtggcccagtggttgaatgcatctgg
ttactgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66644693_66644898
seq2: B6Ng01-226I19.b_343_763 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ACACACACACACATACATATTTGTGTGGCTGGAGCAAACTCTTTTGAGCA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GGCTCCAACAACTGTATTTCTTCTCCCATAGCTTATATATCCCAGCAAAA  100

seq1  --------------------------------------------------  0
                                                        
seq2  TCTTTCAAGCAATATAGAAATTACAATGTGATTACATTCTATTTTTCTTT  150

seq1  --------------------------------------------------  0
                                                        
seq2  TAGTGAATGATTATGAAAAAACAAACAAACAGTATGTTCCCCAAAACTGT  200

seq1  ---------ACACA-CACACACATACATATATGGGTGCGTATCGATT---  37
               | |||  ||| || ||||  ||  ||  |  |   |||   
seq2  TACATGAAAAAACATTACATAC-TACAGCTAAAGGAACCAAATTATTCCC  249

seq1  ---------TGTTTTTTTTTTTTTTTTTTGGTTTTTGGTTTTTGGTTTTT  78
               |||   ||  || ||||||| ||||||| |||||  |||||
seq2  AAGAACCCATGTAAATTCATTCTTTTTTT-GTTTTTGTTTTTTCTTTTTT  298

seq1  ---TGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  125
         ||||||||||||        ||  ||||||| |||||||||||||| 
seq2  TCCTGAGACAGGGTT--------TAATCCTGGCTATCCTGGAACTCACTC  340

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCC  175
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCC  390

seq1  AAGTGCTGGGATTAAAGGCGTGTGCCACCAC  206
       || ||||| || ||||||||||||||||||
seq2  GAGAGCTGGAATGAAAGGCGTGTGCCACCAC  421

seq1: chr12_106490953_106492005
seq2: B6Ng01-226I19.g_71_1129 (reverse)

seq1  CCCCAGTGA-CAGATGC--TCATCCACT-GGCCACC-ATGAGGTAGCTTC  45
      ||||||| | |||||||  ||| ||||| ||||||| |||| ||||||||
seq2  CCCCAGTAACCAGATGCATTCAACCACTGGGCCACCAATGAAGTAGCTTC  50

seq1  TGAAGG-CATTCACATGCAGTACATGTT-GGCCCCTACTGA-TTGCCCCT  92
      |||||| ||||| ||||||||||||||| ||||| |||||| ||||||||
seq2  TGAAGGCCATTC-CATGCAGTACATGTTGGGCCCATACTGATTTGCCCCT  99

seq1  GTGGATAGCCTGATGGCTGGACCACAGCCAGGAAGAACAAGTCAAGCCAA  142
      || ||||||||| ||||||||||||||||||||||| |||||||| ||||
seq2  GTTGATAGCCTG-TGGCTGGACCACAGCCAGGAAGACCAAGTCAA-CCAA  147

seq1  GAGTCCAGGGTCACAGGCATCCCAGGGCTGCGGAGTAAATCCTTATCAGG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGGGTCACAGGCATCCCAGGGCTGCGGAGTAAATCCTTATCAGG  197

seq1  TGATATCCTCTAGGACTGTGTTCATCCCAAAGTGCAGAG-AGACTTGGAT  241
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGATATCCTCTAGGACTGTGTTCATCCCAAAGTGCAGAGAAGACTTGGAT  247

seq1  CCAGTCACCACTGGCTTTGTAAGATCAATGTCTCTGCCTCGTTCGGGACC  291
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCAGTCACCACTGGC-TTGTAAGATCAATGTCTCTGCCTCGTTCGGGACC  296

seq1  CCCTGCAAAGCTGGATATTCTTCATAGAACAGTTTTTCTTCTTTT-ACTG  340
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCTGCAAAGCTGGATATTCTTCATAGAACAGTTTTTCTTCTTTTAACTG  346

seq1  TGGTGTCTGTGTGTGGTGTAGGTGCATAGGGTCTCCTGTGCATGTGCATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTGTGTGTGGTGTAGGTGCATAGGGTCTCCTGTGCATGTGCATA  396

seq1  CGAAGGTCAGAGATGGACACTGAGCGTCTCCTCTCACTGAACCTGGAACT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCAGAGATGGACACTGAGCGTCTCCTCTCACTGAACCTGGAACT  446

seq1  CACGGTTTCTGTTTGACTGGCAGGCCAGCCAGCATCCTAGGATCCTCCTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTTCTGTTTGACTGGCAGGCCAGCCAGCATCCTAGGATCCTCCTG  496

seq1  CCCAGGCTCTCCCTCAGTGCTGGGAACACAGACGCGCAGCACCCTGCCAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCTCCCTCAGTGCTGGGAACACAGACGCGCAGCACCCTGCCAG  546

seq1  GCTTTTGCATAAATTCTGGGGATCTGAACACAGGTCCTTCCTCATTCCGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCATAAATTCTGGGGATCTGAACACAGGTCCTTCCTCATTCCGG  596

seq1  TACACCTGCTGAGCCATTTTCCCAGCGCACCCACGTAAAACTTTCTAACA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGCTGAGCCATTTTCCCAGCGCACCCACGTAAAACTTTCTAACA  646

seq1  GGAACACAGGACCAGGACAATTGTGTCCCCTTTTCTGCATCAACAGAGCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGGACCAGGACAATTGTGTCCCCTTTTCTGCATCAACAGAGCC  696

seq1  TGTGTTACACCTAGCATGTCACAGATACTCAATAAATGACTGTGGAATGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACACCTAGCATGTCACAGATACTCAATAAATGACTGTGGAATGT  746

seq1  GTGAAGGAATTCATGGATCACTCAGAAGGACCCTGCTTCCTTCTTAGCAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAATTCATGGATCACTCAGAAGGACCCTGCTTCCTTCTTAGCAC  796

seq1  ACACCCTCTGAGCTTGAAAGGAACAGACAGTTGGTTAGGCCAATTGCTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCTGAGCTTGAAAGGAACAGACAGTTGGTTAGGCCAATTGCTTG  846

seq1  ACATCGAAACCCCTCAGTATAGATGTGGTGGCCATAGGTGCGAGCCCTAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGAAACCCCTCAGTATAGATGTGGTGGCCATAGGTGCGAGCCCTAC  896

seq1  TAGGGGTGAAGGTTGGCTCCACCGTTGTAGCCCACTTATAGGAAGACGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTGAAGGTTGGCTCCACCGTTGTAGCCCACTTATAGGAAGACGCT  946

seq1  GCATTCGCACACGTCTCCTCAGCCACGCCTCTTTTTTCTTTTAGAAATTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGCACACGTCTCCTCAGCCACGCCTCTTTTTTCTTTTAGAAATTG  996

seq1  CATCTTTTATGTATTTAGCTCTGACAGTTCAATGGTTTTGTTTTTATTAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTATGTATTTAGCTCTGACAGTTCAATGGTTTTGTTTTTATTAA  1046

seq1  TCTGTGTGAATTC  1053
      |||||||||||||
seq2  TCTGTGTGAATTC  1059